Wall clock time and date at job start Mon Mar 30 2020 03:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00229 * 269.99670 * 10 9 7 12 12 C 1.52997 * 109.47247 * 90.00234 * 11 10 9 13 13 H 1.08997 * 109.87163 * 58.99120 * 12 11 10 14 14 C 1.54097 * 109.88131 * 180.02562 * 12 11 10 15 15 C 1.54808 * 104.18983 * 121.45146 * 14 12 11 16 16 C 1.54991 * 102.09257 * 20.88256 * 15 14 12 17 17 O 1.43746 * 109.87718 * 297.83504 * 12 11 10 18 18 C 1.34779 * 119.99786 * 90.00213 * 10 9 7 19 19 N 1.34780 * 119.99629 * 180.02562 * 18 10 9 20 20 O 1.21582 * 120.00438 * 359.97438 * 18 10 9 21 21 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 23 23 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 24 24 H 1.09000 * 109.47510 * 210.00347 * 11 10 9 25 25 H 1.09000 * 109.46747 * 330.00037 * 11 10 9 26 26 H 1.09008 * 110.48598 * 240.13024 * 14 12 11 27 27 H 1.09000 * 110.48597 * 2.63813 * 14 12 11 28 28 H 1.09007 * 110.90717 * 139.07971 * 15 14 12 29 29 H 1.08994 * 110.91046 * 262.67833 * 15 14 12 30 30 H 1.08997 * 110.62272 * 81.47683 * 16 15 14 31 31 H 1.09003 * 110.61646 * 204.32032 * 16 15 14 32 32 H 0.96998 * 120.00069 * 359.97438 * 19 18 10 33 33 H 0.97006 * 120.00079 * 179.97438 * 19 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 2.6800 -4.1689 -1.2700 12 6 3.9424 -3.4252 -1.7105 13 1 4.7139 -3.5202 -0.9464 14 6 4.4521 -4.0028 -3.0451 15 6 4.4510 -2.7907 -4.0082 16 6 4.4752 -1.5938 -3.0237 17 8 3.6396 -2.0378 -1.9336 18 6 2.6400 -4.1254 1.1659 19 7 3.5162 -5.1494 1.1661 20 8 2.2444 -3.6635 2.2187 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5575 0.8880 23 1 0.6246 -2.5563 -0.8919 24 1 2.9082 -5.2268 -1.1400 25 1 1.9071 -4.0547 -2.0302 26 1 5.4617 -4.3972 -2.9293 27 1 3.7789 -4.7802 -3.4062 28 1 5.3403 -2.7939 -4.6385 29 1 3.5458 -2.7769 -4.6151 30 1 5.4906 -1.4030 -2.6763 31 1 4.0574 -0.7028 -3.4925 32 1 3.8320 -5.5177 0.3261 33 1 3.8310 -5.5183 2.0062 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259615505.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:50 Heat of formation + Delta-G solvation = -69.196543 kcal Electronic energy + Delta-G solvation = -16930.810026 eV Core-core repulsion = 14184.981227 eV Total energy + Delta-G solvation = -2745.828799 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.53121 -38.44641 -34.72367 -33.15667 -32.04690 -31.68599 -29.80011 -26.92049 -24.88227 -22.74027 -21.84507 -20.69339 -19.18383 -17.48562 -16.69416 -16.32340 -15.62065 -15.19740 -14.89058 -14.42650 -14.04319 -13.57895 -13.31437 -12.96542 -12.39592 -11.95414 -11.84626 -11.46372 -11.34441 -10.98538 -10.74128 -10.67083 -10.54615 -10.31002 -9.89274 -9.31591 -9.15936 -9.11768 -9.01463 -8.17346 -7.47309 -5.77681 -3.74081 3.44365 3.51397 3.56772 3.75524 4.10724 4.34916 4.65865 4.74304 4.81127 5.01060 5.18540 5.39480 5.48480 5.57618 5.61731 5.79085 5.81763 5.88395 5.98682 6.18039 6.23744 6.35509 6.87499 7.46066 7.52005 7.55481 7.72309 7.90503 8.23797 8.53603 8.82212 9.27544 9.52350 9.86485 11.32011 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.013374 C = 0.008846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.145608 B = 2093.103175 C = 3164.482780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.052 3.948 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.482 4.482 8 H 0.069 0.931 9 C 0.262 3.738 10 N -0.607 5.607 11 C 0.119 3.881 12 C 0.055 3.945 13 H 0.059 0.941 14 C -0.150 4.150 15 C -0.153 4.153 16 C 0.035 3.965 17 O -0.309 6.309 18 C 0.699 3.301 19 N -0.883 5.883 20 O -0.590 6.590 21 H 0.257 0.743 22 H 0.040 0.960 23 H 0.029 0.971 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.387 0.613 33 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.871 -10.150 -8.475 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.147 4.147 3 Si 0.722 3.278 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.521 4.521 8 H 0.087 0.913 9 C 0.143 3.857 10 N -0.343 5.343 11 C -0.006 4.006 12 C -0.005 4.005 13 H 0.077 0.923 14 C -0.189 4.189 15 C -0.190 4.190 16 C -0.043 4.043 17 O -0.227 6.227 18 C 0.399 3.601 19 N -0.453 5.453 20 O -0.468 6.468 21 H 0.066 0.934 22 H 0.058 0.942 23 H 0.047 0.953 24 H 0.086 0.914 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.215 0.785 33 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 9.148 -9.438 -7.745 15.256 hybrid contribution 1.060 0.529 -0.381 1.244 sum 10.209 -8.909 -8.126 15.799 Atomic orbital electron populations 1.69959 1.05870 1.26156 1.52977 1.24864 0.94699 0.98818 0.96292 0.86510 0.80148 0.84078 0.77016 1.19961 1.21514 1.21527 1.21526 0.93843 0.89966 1.46792 0.91285 1.19205 0.86640 0.82015 0.97823 1.47481 1.47704 1.37009 1.02080 1.21567 0.96014 0.94831 0.88197 1.23230 0.96863 0.84946 0.95492 0.92345 1.22979 1.01503 0.98739 0.95669 1.23115 1.02313 0.95258 0.98357 1.23526 0.95378 0.97366 0.88002 1.89611 1.60328 1.21804 1.50920 1.16002 0.79572 0.79692 0.84843 1.43260 1.51370 1.39413 1.11287 1.90918 1.62017 1.63471 1.30360 0.93378 0.94205 0.95300 0.91386 0.89935 0.91214 0.90626 0.91106 0.90619 0.93323 0.89451 0.78482 0.76656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.13 13.29 55.43 0.74 -27.40 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.89 23.11 29.54 -169.99 -5.02 18.09 16 4 H -0.27 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 7 C -0.48 -14.07 7.55 -34.44 -0.26 -14.33 16 8 H 0.07 2.05 6.38 -52.49 -0.33 1.72 16 9 C 0.26 7.13 5.12 -5.19 -0.03 7.11 16 10 N -0.61 -13.24 2.43 -180.80 -0.44 -13.68 16 11 C 0.12 1.93 4.71 -4.04 -0.02 1.91 16 12 C 0.05 0.86 3.69 -26.16 -0.10 0.76 16 13 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 14 C -0.15 -1.69 6.64 -25.21 -0.17 -1.86 16 15 C -0.15 -1.79 7.15 -24.73 -0.18 -1.97 16 16 C 0.03 0.53 7.72 38.21 0.29 0.83 16 17 O -0.31 -6.18 7.55 -35.23 -0.27 -6.44 16 18 C 0.70 15.26 8.55 -86.91 -0.74 14.52 16 19 N -0.88 -13.20 8.74 27.63 0.24 -12.96 16 20 O -0.59 -16.00 16.76 5.29 0.09 -15.91 16 21 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 22 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 23 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 24 H 0.07 0.82 6.36 -51.93 -0.33 0.49 16 25 H 0.08 1.35 7.89 -51.93 -0.41 0.94 16 26 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 27 H 0.08 0.73 7.70 -51.93 -0.40 0.33 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.39 4.46 6.56 -40.82 -0.27 4.19 16 33 H 0.40 5.25 8.93 -40.82 -0.36 4.89 16 LS Contribution 272.52 15.07 4.11 4.11 Total: -1.00 -36.28 272.52 -6.42 -42.70 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -4.57 Total: 3.07 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -1.29 Total: 8.42 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.54 Total: -54.03 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.18 Total: -22.35 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -36.28 -6.42 -42.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259615505.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.497 kcal (2) G-P(sol) polarization free energy of solvation -36.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds