Wall clock time and date at job start Mon Mar 30 2020 03:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00229 * 269.99670 * 10 9 7 12 12 C 1.52997 * 109.47247 * 90.00234 * 11 10 9 13 13 H 1.08997 * 109.87163 * 58.99120 * 12 11 10 14 14 C 1.54097 * 109.88131 * 180.02562 * 12 11 10 15 15 C 1.54808 * 104.18983 * 121.45146 * 14 12 11 16 16 C 1.54991 * 102.09257 * 20.88256 * 15 14 12 17 17 O 1.43746 * 109.87718 * 297.83504 * 12 11 10 18 18 C 1.34779 * 119.99786 * 90.00213 * 10 9 7 19 19 N 1.34780 * 119.99629 * 180.02562 * 18 10 9 20 20 O 1.21582 * 120.00438 * 359.97438 * 18 10 9 21 21 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 23 23 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 24 24 H 1.09000 * 109.47510 * 210.00347 * 11 10 9 25 25 H 1.09000 * 109.46747 * 330.00037 * 11 10 9 26 26 H 1.09008 * 110.48598 * 240.13024 * 14 12 11 27 27 H 1.09000 * 110.48597 * 2.63813 * 14 12 11 28 28 H 1.09007 * 110.90717 * 139.07971 * 15 14 12 29 29 H 1.08994 * 110.91046 * 262.67833 * 15 14 12 30 30 H 1.08997 * 110.62272 * 81.47683 * 16 15 14 31 31 H 1.09003 * 110.61646 * 204.32032 * 16 15 14 32 32 H 0.96998 * 120.00069 * 359.97438 * 19 18 10 33 33 H 0.97006 * 120.00079 * 179.97438 * 19 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 2.6800 -4.1689 -1.2700 12 6 3.9424 -3.4252 -1.7105 13 1 4.7139 -3.5202 -0.9464 14 6 4.4521 -4.0028 -3.0451 15 6 4.4510 -2.7907 -4.0082 16 6 4.4752 -1.5938 -3.0237 17 8 3.6396 -2.0378 -1.9336 18 6 2.6400 -4.1254 1.1659 19 7 3.5162 -5.1494 1.1661 20 8 2.2444 -3.6635 2.2187 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5575 0.8880 23 1 0.6246 -2.5563 -0.8919 24 1 2.9082 -5.2268 -1.1400 25 1 1.9071 -4.0547 -2.0302 26 1 5.4617 -4.3972 -2.9293 27 1 3.7789 -4.7802 -3.4062 28 1 5.3403 -2.7939 -4.6385 29 1 3.5458 -2.7769 -4.6151 30 1 5.4906 -1.4030 -2.6763 31 1 4.0574 -0.7028 -3.4925 32 1 3.8320 -5.5177 0.3261 33 1 3.8310 -5.5183 2.0062 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259615505.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:50 Heat of formation + Delta-G solvation = -97.711737 kcal Electronic energy + Delta-G solvation = -16932.046538 eV Core-core repulsion = 14184.981227 eV Total energy + Delta-G solvation = -2747.065311 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.05794 -39.83963 -36.50611 -35.02565 -33.89163 -32.85913 -31.18392 -28.92480 -26.22809 -24.85094 -23.01409 -21.78704 -20.82356 -19.02356 -18.58240 -18.02468 -16.88002 -16.60194 -16.53527 -16.09417 -15.70580 -15.34999 -14.67563 -14.29525 -14.21955 -13.56064 -13.39046 -13.09849 -12.79971 -12.61787 -12.50262 -12.18345 -11.90096 -11.85478 -11.52303 -11.29738 -11.07297 -10.56666 -10.48114 -10.43007 -9.26673 -8.04657 -6.09010 1.37168 1.39999 1.52248 2.12691 2.40860 2.51572 3.15770 3.30233 3.46493 3.80307 3.97557 4.14236 4.26362 4.33698 4.51137 4.63937 4.82946 4.95181 5.00560 5.01853 5.07895 5.21100 5.34198 5.35153 5.75075 5.92860 6.15623 6.18196 6.28749 6.36797 6.99010 7.26378 7.52811 7.88410 9.04061 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.013374 C = 0.008846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.145608 B = 2093.103175 C = 3164.482780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.004 4.004 3 Si 0.958 3.042 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.288 1.288 7 C -0.481 4.481 8 H 0.062 0.938 9 C 0.281 3.719 10 N -0.613 5.613 11 C 0.112 3.888 12 C 0.049 3.951 13 H 0.054 0.946 14 C -0.137 4.137 15 C -0.143 4.143 16 C 0.023 3.977 17 O -0.364 6.364 18 C 0.693 3.307 19 N -0.847 5.847 20 O -0.652 6.652 21 H 0.259 0.741 22 H -0.008 1.008 23 H 0.017 0.983 24 H 0.118 0.882 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.409 0.591 33 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.134 -11.519 -10.098 19.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.199 4.199 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.215 1.215 7 C -0.520 4.520 8 H 0.080 0.920 9 C 0.159 3.841 10 N -0.347 5.347 11 C -0.011 4.011 12 C -0.011 4.011 13 H 0.072 0.928 14 C -0.175 4.175 15 C -0.181 4.181 16 C -0.054 4.054 17 O -0.283 6.283 18 C 0.392 3.608 19 N -0.419 5.419 20 O -0.535 6.535 21 H 0.068 0.932 22 H 0.010 0.990 23 H 0.035 0.965 24 H 0.136 0.864 25 H 0.097 0.903 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.241 0.759 33 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 11.477 -10.878 -9.424 18.408 hybrid contribution 0.383 0.884 0.104 0.969 sum 11.860 -9.993 -9.321 18.094 Atomic orbital electron populations 1.70080 1.07316 1.27072 1.54139 1.25698 0.95583 1.02434 0.96211 0.85500 0.78911 0.79863 0.77275 1.19498 1.20148 1.21492 1.21676 0.93485 0.90957 1.45914 0.92004 1.18594 0.87050 0.83651 0.94837 1.47272 1.47099 1.35918 1.04426 1.21987 0.96340 0.97329 0.85412 1.23369 0.96164 0.83573 0.97980 0.92783 1.22949 1.03403 0.98677 0.92473 1.23074 1.03605 0.93543 0.97855 1.23712 0.94936 0.98664 0.88092 1.89516 1.61788 1.24323 1.52697 1.16242 0.80139 0.80615 0.83783 1.42775 1.48943 1.36937 1.13271 1.90874 1.64331 1.65726 1.32564 0.93245 0.98951 0.96481 0.86447 0.90310 0.88412 0.88421 0.88186 0.90917 0.92589 0.90582 0.75887 0.75023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.13 13.29 21.45 0.28 -59.84 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 3 Si 0.96 48.32 29.54 68.60 2.03 50.35 16 4 H -0.27 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 7 C -0.48 -28.84 7.55 25.60 0.19 -28.65 16 8 H 0.06 3.75 6.38 -2.91 -0.02 3.73 16 9 C 0.28 15.85 5.12 85.64 0.44 16.29 16 10 N -0.61 -26.74 2.43 -844.20 -2.05 -28.79 16 11 C 0.11 3.40 4.71 86.38 0.41 3.81 16 12 C 0.05 1.41 3.69 30.96 0.11 1.52 16 13 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 14 C -0.14 -2.48 6.64 31.58 0.21 -2.27 16 15 C -0.14 -2.89 7.15 31.89 0.23 -2.66 16 16 C 0.02 0.67 7.72 72.66 0.56 1.23 16 17 O -0.36 -14.37 7.55 -148.98 -1.12 -15.50 16 18 C 0.69 30.05 8.55 179.05 1.53 31.58 16 19 N -0.85 -23.19 8.74 -184.75 -1.61 -24.80 16 20 O -0.65 -36.34 16.76 -3.97 -0.07 -36.41 16 21 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 22 H -0.01 -0.50 7.42 -2.39 -0.02 -0.51 16 23 H 0.02 1.00 7.89 -2.39 -0.02 0.98 16 24 H 0.12 2.32 6.36 -2.39 -0.02 2.31 16 25 H 0.08 2.46 7.89 -2.39 -0.02 2.44 16 26 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.10 1.38 7.70 -2.39 -0.02 1.36 16 28 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.41 7.74 6.56 -92.71 -0.61 7.14 16 33 H 0.42 9.77 8.93 -92.70 -0.83 8.94 16 Total: -1.00 -83.32 272.52 1.29 -82.04 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -0.31 Total: 11.88 kcal Atomic # 6 Polarization: 16.94 SS G_CDS: 4.14 Total: 21.08 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -3.38 Total: -113.44 kcal Atomic # 8 Polarization: -50.72 SS G_CDS: -1.19 Total: -51.91 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.03 Total: 50.35 kcal Total: -83.32 1.29 -82.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259615505.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.675 kcal (2) G-P(sol) polarization free energy of solvation -83.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds