Wall clock time and date at job start Mon Mar 30 2020 03:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99578 * 2 1 4 4 H 1.48497 * 109.47106 * 269.99805 * 3 2 1 5 5 H 1.48507 * 109.47188 * 29.99578 * 3 2 1 6 6 H 1.48497 * 109.47040 * 149.99444 * 3 2 1 7 7 C 1.37877 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00114 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99780 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47141 * 180.02562 * 9 7 2 11 11 C 1.46499 * 119.99990 * 90.00373 * 10 9 7 12 12 C 1.52997 * 109.47540 * 89.99863 * 11 10 9 13 13 H 1.08997 * 109.86902 * 306.01287 * 12 11 10 14 14 C 1.54096 * 109.87921 * 184.99881 * 12 11 10 15 15 C 1.54817 * 104.18822 * 238.39849 * 14 12 11 16 16 C 1.54991 * 102.09285 * 339.11830 * 15 14 12 17 17 O 1.43749 * 109.99810 * 67.09318 * 12 11 10 18 18 C 1.34777 * 120.00281 * 270.00405 * 10 9 7 19 19 N 1.34782 * 119.99547 * 359.97438 * 18 10 9 20 20 O 1.21586 * 120.00304 * 179.97438 * 18 10 9 21 21 H 0.96993 * 120.00155 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47330 * 60.00131 * 9 7 2 23 23 H 1.08997 * 109.47661 * 300.00101 * 9 7 2 24 24 H 1.09004 * 109.46738 * 329.99669 * 11 10 9 25 25 H 1.09003 * 109.47041 * 210.00404 * 11 10 9 26 26 H 1.09004 * 110.48850 * 119.72115 * 14 12 11 27 27 H 1.09002 * 110.60601 * 357.13078 * 14 12 11 28 28 H 1.08996 * 110.90849 * 97.31959 * 15 14 12 29 29 H 1.09004 * 110.90250 * 220.92384 * 15 14 12 30 30 H 1.09000 * 110.62043 * 155.51925 * 16 15 14 31 31 H 1.08998 * 110.62229 * 278.52472 * 16 15 14 32 32 H 0.96999 * 120.00327 * 0.02562 * 19 18 10 33 33 H 0.97006 * 119.99806 * 180.02562 * 19 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2033 -3.6126 0.0018 11 6 2.6782 -4.1688 1.2711 12 6 1.7473 -5.2998 1.7126 13 1 0.7179 -4.9425 1.7410 14 6 2.1644 -5.8080 3.1062 15 6 2.4607 -7.3119 2.8887 16 6 1.6807 -7.6110 1.5832 17 8 1.8549 -6.4082 0.8036 18 6 2.6422 -4.1253 -1.1648 19 7 2.2048 -3.6138 -2.3326 20 8 3.4327 -5.0491 -1.1638 21 1 -0.4850 0.8400 -0.0004 22 1 0.6249 -2.5571 -0.8897 23 1 0.6242 -2.5567 0.8902 24 1 2.6854 -3.3867 2.0304 25 1 3.6879 -4.5588 1.1418 26 1 1.3498 -5.6788 3.8190 27 1 3.0585 -5.2891 3.4520 28 1 3.5285 -7.4821 2.7515 29 1 2.0764 -7.9077 3.7167 30 1 2.1113 -8.4688 1.0667 31 1 0.6253 -7.7804 1.7968 32 1 1.5745 -2.8766 -2.3335 33 1 2.5204 -3.9831 -3.1723 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259615509.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:53 Heat of formation + Delta-G solvation = -103.355442 kcal Electronic energy + Delta-G solvation = -16526.148073 eV Core-core repulsion = 13778.838033 eV Total energy + Delta-G solvation = -2747.310040 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.99690 -39.89852 -36.61879 -34.61942 -34.29443 -32.96220 -31.16473 -29.00159 -26.30884 -24.88337 -23.04113 -21.93329 -20.74471 -19.01098 -18.61913 -17.81857 -17.16167 -16.76238 -16.37589 -16.16516 -15.80268 -15.26721 -14.64737 -14.42279 -14.28525 -13.61896 -13.48977 -13.07711 -12.74070 -12.60530 -12.49763 -12.39185 -12.02780 -11.88441 -11.67756 -11.52557 -11.06675 -10.60047 -10.58778 -10.41382 -9.28096 -8.18653 -6.34790 1.42681 1.45068 1.54507 2.21633 2.40627 2.49803 3.07058 3.10059 3.60924 3.73036 3.89972 4.04895 4.21807 4.34842 4.48593 4.68251 4.77155 4.87220 4.91230 4.95227 5.01386 5.15070 5.19882 5.26016 5.63693 5.78385 6.06808 6.15929 6.24634 6.26983 6.71195 7.16707 7.40501 7.93913 8.85500 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.033702 B = 0.007554 C = 0.006774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.611900 B = 3705.977039 C = 4132.481589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.023 3.977 3 Si 0.959 3.041 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.050 0.950 9 C 0.257 3.743 10 N -0.617 5.617 11 C 0.137 3.863 12 C 0.060 3.940 13 H 0.054 0.946 14 C -0.143 4.143 15 C -0.143 4.143 16 C 0.032 3.968 17 O -0.389 6.389 18 C 0.704 3.296 19 N -0.857 5.857 20 O -0.640 6.640 21 H 0.268 0.732 22 H 0.024 0.976 23 H 0.021 0.979 24 H 0.093 0.907 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.406 0.594 33 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.406 -8.990 4.984 10.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.177 4.177 3 Si 0.784 3.216 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.585 4.585 8 H 0.068 0.932 9 C 0.135 3.865 10 N -0.352 5.352 11 C 0.013 3.987 12 C 0.000 4.000 13 H 0.072 0.928 14 C -0.181 4.181 15 C -0.180 4.180 16 C -0.044 4.044 17 O -0.309 6.309 18 C 0.404 3.596 19 N -0.426 5.426 20 O -0.524 6.524 21 H 0.077 0.923 22 H 0.042 0.958 23 H 0.039 0.961 24 H 0.112 0.888 25 H 0.085 0.915 26 H 0.112 0.888 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.124 0.876 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.237 0.763 33 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 1.769 -9.418 4.945 10.783 hybrid contribution -0.060 1.257 -0.357 1.308 sum 1.709 -8.160 4.588 9.517 Atomic orbital electron populations 1.70009 1.07143 1.28231 1.50388 1.25644 0.95565 1.02230 0.94307 0.85543 0.78496 0.79160 0.78352 1.20009 1.20591 1.19844 1.21699 0.93224 0.91662 1.51961 0.93170 1.18961 0.87488 0.82911 0.97111 1.47220 1.47764 1.35909 1.04320 1.21500 0.97406 0.94640 0.85127 1.23236 0.98460 0.88205 0.90049 0.92812 1.22939 1.03407 0.96604 0.95184 1.23085 1.01291 0.95549 0.98123 1.23759 0.99880 0.88496 0.92252 1.89083 1.93536 1.15265 1.32997 1.16015 0.80455 0.81283 0.81887 1.42967 1.52132 1.40962 1.06504 1.90807 1.40907 1.33372 1.87273 0.92261 0.95794 0.96053 0.88848 0.91496 0.88805 0.89509 0.90787 0.87624 0.88927 0.91672 0.76297 0.75567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.83 13.29 21.45 0.28 -49.54 16 2 C 0.02 1.20 5.46 84.65 0.46 1.66 16 3 Si 0.96 41.51 29.54 68.60 2.03 43.53 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -28.47 9.39 25.60 0.24 -28.22 16 8 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 9 C 0.26 12.44 4.93 85.63 0.42 12.86 16 10 N -0.62 -27.76 2.45 -844.20 -2.07 -29.83 16 11 C 0.14 5.39 4.92 86.38 0.42 5.81 16 12 C 0.06 2.03 3.66 30.96 0.11 2.15 16 13 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 14 C -0.14 -3.45 6.64 31.59 0.21 -3.24 16 15 C -0.14 -3.03 7.15 31.90 0.23 -2.80 16 16 C 0.03 0.86 7.72 72.66 0.56 1.42 16 17 O -0.39 -14.76 10.12 -143.44 -1.45 -16.21 16 18 C 0.70 32.41 8.25 179.05 1.48 33.89 16 19 N -0.86 -33.24 8.74 -184.74 -1.61 -34.86 16 20 O -0.64 -32.48 16.01 1.55 0.02 -32.46 16 21 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 22 H 0.02 1.20 6.36 -2.39 -0.02 1.18 16 23 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 24 H 0.09 3.44 8.07 -2.39 -0.02 3.42 16 25 H 0.07 2.75 7.42 -2.39 -0.02 2.73 16 26 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.09 1.95 7.70 -2.39 -0.02 1.93 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.41 15.76 6.56 -92.71 -0.61 15.15 16 33 H 0.41 13.53 8.93 -92.70 -0.83 12.71 16 Total: -1.00 -65.47 277.66 1.02 -64.45 By element: Atomic # 1 Polarization: 31.71 SS G_CDS: -0.31 Total: 31.39 kcal Atomic # 6 Polarization: 19.39 SS G_CDS: 4.14 Total: 23.53 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -3.40 Total: -114.23 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -1.43 Total: -48.66 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Total: -65.47 1.02 -64.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259615509.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.910 kcal (2) G-P(sol) polarization free energy of solvation -65.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds