Wall clock time and date at job start Mon Mar 30 2020 03:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 O 1.42896 * 109.47293 * 180.02562 * 9 7 2 11 11 C 1.42897 * 114.00089 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47307 * 179.97438 * 11 10 9 13 13 H 1.09006 * 109.87405 * 305.44240 * 12 11 10 14 14 C 1.54317 * 109.88662 * 184.26021 * 12 11 10 15 15 C 1.55154 * 102.94585 * 218.38932 * 14 12 11 16 16 C 1.54907 * 101.58064 * 35.50412 * 15 14 12 17 17 N 1.47029 * 109.88087 * 66.45333 * 12 11 10 18 18 C 1.34781 * 125.65069 * 298.32184 * 17 12 11 19 19 N 1.34773 * 120.00291 * 179.97438 * 18 17 12 20 20 O 1.21592 * 119.99783 * 0.02562 * 18 17 12 21 21 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 22 22 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 23 23 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 24 24 H 1.09009 * 109.47304 * 299.99806 * 11 10 9 25 25 H 1.09000 * 109.47346 * 59.99699 * 11 10 9 26 26 H 1.09004 * 110.72250 * 336.75678 * 14 12 11 27 27 H 1.08999 * 110.72110 * 100.02747 * 14 12 11 28 28 H 1.08997 * 111.00607 * 277.42569 * 15 14 12 29 29 H 1.09007 * 111.03919 * 153.58834 * 15 14 12 30 30 H 1.09003 * 110.36559 * 204.15205 * 16 15 14 31 31 H 1.09002 * 110.37275 * 81.82944 * 16 15 14 32 32 H 0.96998 * 119.99957 * 0.02562 * 19 18 17 33 33 H 0.96994 * 119.99983 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 8 2.1795 -3.5854 -0.0118 11 6 1.5650 -4.8754 -0.0117 12 6 2.6478 -5.9563 -0.0189 13 1 3.3263 -5.7955 -0.8568 14 6 1.9966 -7.3511 -0.1267 15 6 2.8778 -8.2195 0.8096 16 6 3.2221 -7.2123 1.9350 17 7 3.3977 -5.9212 1.2453 18 6 4.1257 -4.8813 1.6983 19 7 4.7696 -4.9728 2.8787 20 8 4.2008 -3.8602 1.0423 21 1 -0.4849 0.8401 0.0041 22 1 0.6280 -2.5591 0.8866 23 1 0.6206 -2.5548 -0.8933 24 1 0.9485 -4.9842 0.8807 25 1 0.9411 -4.9808 -0.8993 26 1 0.9664 -7.3243 0.2286 27 1 2.0426 -7.7201 -1.1513 28 1 3.7790 -8.5557 0.2969 29 1 2.3151 -9.0666 1.2021 30 1 4.1456 -7.5037 2.4354 31 1 2.4039 -7.1508 2.6526 32 1 4.7095 -5.7872 3.4021 33 1 5.2933 -4.2243 3.2048 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260269417.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:16 Heat of formation + Delta-G solvation = -72.113985 kcal Electronic energy + Delta-G solvation = -16449.606460 eV Core-core repulsion = 13703.651151 eV Total energy + Delta-G solvation = -2745.955309 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.86740 -37.26065 -35.99778 -33.21979 -32.49589 -30.90243 -30.07164 -26.98861 -24.71987 -22.65376 -22.00475 -21.17055 -19.14321 -17.87870 -16.66331 -16.21644 -15.83337 -15.12649 -14.57845 -14.35024 -14.17355 -13.93232 -13.28120 -13.02654 -12.70524 -12.29937 -12.07848 -11.39569 -11.35673 -11.12979 -10.85091 -10.64713 -10.56679 -10.43742 -9.86768 -9.41472 -9.14166 -8.83899 -8.58828 -8.18170 -7.88423 -5.92418 -3.90331 3.10790 3.42203 3.45869 3.54492 3.86484 4.40269 4.47710 4.54962 4.72067 4.84198 5.12028 5.32385 5.43825 5.44559 5.60287 5.71402 5.75387 5.83834 6.00720 6.06567 6.23574 6.46189 6.58743 7.21317 7.29017 7.37676 7.63292 8.03920 8.38215 8.40202 8.86577 9.23434 9.31642 9.73359 11.19910 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.038953 B = 0.006985 C = 0.006182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.640441 B = 4007.901058 C = 4528.490038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.050 3.950 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.495 4.495 8 H 0.069 0.931 9 C 0.194 3.806 10 O -0.354 6.354 11 C 0.050 3.950 12 C 0.159 3.841 13 H 0.078 0.922 14 C -0.126 4.126 15 C -0.130 4.130 16 C 0.100 3.900 17 N -0.632 5.632 18 C 0.705 3.295 19 N -0.876 5.876 20 O -0.522 6.522 21 H 0.260 0.740 22 H -0.004 1.004 23 H -0.002 1.002 24 H 0.032 0.968 25 H 0.040 0.960 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.386 0.614 33 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.549 -18.381 4.688 19.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.149 4.149 3 Si 0.734 3.266 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.533 4.533 8 H 0.088 0.912 9 C 0.119 3.881 10 O -0.272 6.272 11 C -0.030 4.030 12 C 0.055 3.945 13 H 0.096 0.904 14 C -0.164 4.164 15 C -0.168 4.168 16 C -0.024 4.024 17 N -0.374 5.374 18 C 0.405 3.595 19 N -0.446 5.446 20 O -0.392 6.392 21 H 0.070 0.930 22 H 0.014 0.986 23 H 0.016 0.984 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.213 0.787 33 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 5.608 -17.472 4.117 18.806 hybrid contribution 0.060 0.704 0.560 0.902 sum 5.668 -16.768 4.677 18.307 Atomic orbital electron populations 1.69985 1.06052 1.26694 1.51992 1.24957 0.94934 0.99300 0.95751 0.86360 0.79736 0.82462 0.78076 1.20627 1.21320 1.19676 1.21125 0.94341 0.89170 1.48695 0.91236 1.20124 0.88898 0.84612 0.94478 1.88285 1.32802 1.11355 1.94792 1.22644 0.94095 0.87511 0.98713 1.21422 0.92944 0.93747 0.86405 0.90377 1.22629 0.99619 0.93386 1.00752 1.22730 1.00295 0.97280 0.96505 1.22199 1.00598 0.84090 0.95531 1.47554 1.53065 1.13890 1.22924 1.15590 0.79135 0.82862 0.81945 1.43055 1.57694 1.20947 1.22869 1.91230 1.63764 1.27236 1.56956 0.93027 0.98598 0.98404 0.95024 0.94230 0.90313 0.89810 0.90644 0.90055 0.91448 0.91993 0.78693 0.75739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.91 13.29 55.43 0.74 -28.17 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.91 23.60 29.54 -169.99 -5.02 18.58 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.49 -15.99 9.43 -34.44 -0.32 -16.32 16 8 H 0.07 2.31 7.81 -52.49 -0.41 1.90 16 9 C 0.19 5.85 5.69 36.01 0.20 6.05 16 10 O -0.35 -9.55 7.00 -59.34 -0.42 -9.97 16 11 C 0.05 1.01 5.36 37.16 0.20 1.21 16 12 C 0.16 2.55 3.30 -66.95 -0.22 2.33 16 13 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 14 C -0.13 -1.33 6.48 -24.90 -0.16 -1.49 16 15 C -0.13 -1.08 7.08 -24.59 -0.17 -1.25 16 16 C 0.10 1.01 6.57 -2.53 -0.02 0.99 16 17 N -0.63 -9.85 3.06 -168.69 -0.52 -10.37 16 18 C 0.71 13.17 8.50 -86.92 -0.74 12.44 16 19 N -0.88 -11.58 8.83 27.64 0.24 -11.33 16 20 O -0.52 -13.07 14.46 -18.83 -0.27 -13.34 16 21 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 22 H 0.00 -0.12 8.14 -51.93 -0.42 -0.54 16 23 H 0.00 -0.05 8.14 -51.93 -0.42 -0.48 16 24 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.08 0.80 7.85 -51.93 -0.41 0.39 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.53 7.30 -51.93 -0.38 0.15 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.39 3.63 7.31 -40.82 -0.30 3.33 16 33 H 0.41 5.13 8.93 -40.82 -0.36 4.76 16 LS Contribution 276.16 15.07 4.16 4.16 Total: -1.00 -38.84 276.16 -7.21 -46.05 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -4.80 Total: -1.02 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -1.33 Total: 5.41 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.46 Total: -49.87 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.69 Total: -23.31 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.02 Total: 18.58 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -38.84 -7.21 -46.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260269417.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.066 kcal (2) G-P(sol) polarization free energy of solvation -38.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds