Wall clock time and date at job start Mon Mar 30 2020 03:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 O 1.42896 * 109.47293 * 180.02562 * 9 7 2 11 11 C 1.42897 * 114.00089 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47307 * 179.97438 * 11 10 9 13 13 H 1.09006 * 109.87405 * 305.44240 * 12 11 10 14 14 C 1.54317 * 109.88662 * 184.26021 * 12 11 10 15 15 C 1.55154 * 102.94585 * 218.38932 * 14 12 11 16 16 C 1.54907 * 101.58064 * 35.50412 * 15 14 12 17 17 N 1.47029 * 109.88087 * 66.45333 * 12 11 10 18 18 C 1.34781 * 125.65069 * 298.32184 * 17 12 11 19 19 N 1.34773 * 120.00291 * 179.97438 * 18 17 12 20 20 O 1.21592 * 119.99783 * 0.02562 * 18 17 12 21 21 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 22 22 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 23 23 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 24 24 H 1.09009 * 109.47304 * 299.99806 * 11 10 9 25 25 H 1.09000 * 109.47346 * 59.99699 * 11 10 9 26 26 H 1.09004 * 110.72250 * 336.75678 * 14 12 11 27 27 H 1.08999 * 110.72110 * 100.02747 * 14 12 11 28 28 H 1.08997 * 111.00607 * 277.42569 * 15 14 12 29 29 H 1.09007 * 111.03919 * 153.58834 * 15 14 12 30 30 H 1.09003 * 110.36559 * 204.15205 * 16 15 14 31 31 H 1.09002 * 110.37275 * 81.82944 * 16 15 14 32 32 H 0.96998 * 119.99957 * 0.02562 * 19 18 17 33 33 H 0.96994 * 119.99983 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 8 2.1795 -3.5854 -0.0118 11 6 1.5650 -4.8754 -0.0117 12 6 2.6478 -5.9563 -0.0189 13 1 3.3263 -5.7955 -0.8568 14 6 1.9966 -7.3511 -0.1267 15 6 2.8778 -8.2195 0.8096 16 6 3.2221 -7.2123 1.9350 17 7 3.3977 -5.9212 1.2453 18 6 4.1257 -4.8813 1.6983 19 7 4.7696 -4.9728 2.8787 20 8 4.2008 -3.8602 1.0423 21 1 -0.4849 0.8401 0.0041 22 1 0.6280 -2.5591 0.8866 23 1 0.6206 -2.5548 -0.8933 24 1 0.9485 -4.9842 0.8807 25 1 0.9411 -4.9808 -0.8993 26 1 0.9664 -7.3243 0.2286 27 1 2.0426 -7.7201 -1.1513 28 1 3.7790 -8.5557 0.2969 29 1 2.3151 -9.0666 1.2021 30 1 4.1456 -7.5037 2.4354 31 1 2.4039 -7.1508 2.6526 32 1 4.7095 -5.7872 3.4021 33 1 5.2933 -4.2243 3.2048 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260269417.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:16 Heat of formation + Delta-G solvation = -102.421629 kcal Electronic energy + Delta-G solvation = -16450.920698 eV Core-core repulsion = 13703.651151 eV Total energy + Delta-G solvation = -2747.269547 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.13298 -38.72636 -37.81647 -34.95778 -34.51724 -31.94471 -31.44897 -29.18758 -26.09562 -24.45187 -23.83402 -22.08285 -20.44295 -19.14346 -18.59252 -17.77081 -17.26882 -17.08805 -16.30802 -16.11336 -15.73665 -15.30387 -14.90454 -14.13766 -14.08573 -13.83351 -13.56684 -13.06203 -12.93707 -12.68819 -12.56270 -12.27951 -12.08508 -11.83335 -11.57263 -11.26330 -10.98056 -10.85673 -10.47123 -10.11580 -9.43571 -8.32607 -6.42833 1.33690 1.38310 1.51131 1.91242 2.34407 2.45063 2.99418 3.19390 3.48860 3.72921 3.87716 4.12606 4.25260 4.30318 4.46727 4.61682 4.65585 4.77733 4.86506 4.96025 5.08588 5.14528 5.17062 5.36726 5.49576 5.57421 6.00764 6.12128 6.14897 6.59331 6.91727 7.19644 7.29374 7.92801 8.80359 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.038953 B = 0.006985 C = 0.006182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.640441 B = 4007.901058 C = 4528.490038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.049 0.951 9 C 0.211 3.789 10 O -0.371 6.371 11 C 0.037 3.963 12 C 0.157 3.843 13 H 0.057 0.943 14 C -0.116 4.116 15 C -0.116 4.116 16 C 0.090 3.910 17 N -0.636 5.636 18 C 0.693 3.307 19 N -0.852 5.852 20 O -0.599 6.599 21 H 0.271 0.729 22 H -0.029 1.029 23 H -0.020 1.020 24 H 0.030 0.970 25 H 0.049 0.951 26 H 0.086 0.914 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.408 0.592 33 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.974 -19.891 5.436 21.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.194 4.194 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.068 0.932 9 C 0.135 3.865 10 O -0.290 6.290 11 C -0.041 4.041 12 C 0.052 3.948 13 H 0.075 0.925 14 C -0.154 4.154 15 C -0.153 4.153 16 C -0.031 4.031 17 N -0.376 5.376 18 C 0.393 3.607 19 N -0.423 5.423 20 O -0.476 6.476 21 H 0.079 0.921 22 H -0.011 1.011 23 H -0.002 1.002 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.104 0.896 27 H 0.122 0.878 28 H 0.103 0.897 29 H 0.134 0.866 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.239 0.761 33 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 6.023 -19.083 4.915 20.606 hybrid contribution -0.113 1.060 0.363 1.126 sum 5.910 -18.023 5.278 19.688 Atomic orbital electron populations 1.70078 1.07597 1.28494 1.51152 1.25981 0.96055 1.03300 0.94094 0.85187 0.78155 0.77037 0.78999 1.18952 1.19161 1.19673 1.21305 0.93594 0.91074 1.51300 0.93245 1.19710 0.88641 0.85849 0.92282 1.88292 1.32809 1.13079 1.94783 1.23081 0.96115 0.85950 0.98968 1.21533 0.91591 0.95315 0.86374 0.92518 1.22651 0.99907 0.89884 1.02910 1.22765 1.00550 0.97108 0.94911 1.22600 1.02511 0.81736 0.96295 1.47642 1.51738 1.15133 1.23097 1.16024 0.79430 0.82645 0.82637 1.42752 1.56231 1.22052 1.21275 1.91180 1.66572 1.30429 1.59375 0.92065 1.01092 1.00224 0.95179 0.93321 0.89584 0.87803 0.89716 0.86562 0.88635 0.91070 0.76105 0.75277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.29 13.29 21.45 0.28 -60.00 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.98 48.88 29.54 68.60 2.03 50.90 16 4 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.27 -13.44 7.11 99.48 0.71 -12.74 16 7 C -0.53 -36.11 9.43 25.60 0.24 -35.87 16 8 H 0.05 3.46 7.81 -2.91 -0.02 3.44 16 9 C 0.21 13.46 5.69 71.24 0.41 13.86 16 10 O -0.37 -21.21 7.00 -125.93 -0.88 -22.09 16 11 C 0.04 1.57 5.36 71.98 0.39 1.96 16 12 C 0.16 5.02 3.30 45.34 0.15 5.17 16 13 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 14 C -0.12 -2.13 6.48 31.78 0.21 -1.92 16 15 C -0.12 -1.42 7.08 31.98 0.23 -1.19 16 16 C 0.09 1.53 6.57 86.85 0.57 2.10 16 17 N -0.64 -19.38 3.06 -805.86 -2.47 -21.85 16 18 C 0.69 26.33 8.50 179.05 1.52 27.85 16 19 N -0.85 -21.89 8.83 -184.74 -1.63 -23.52 16 20 O -0.60 -31.63 14.46 19.05 0.28 -31.35 16 21 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 22 H -0.03 -1.91 8.14 -2.38 -0.02 -1.93 16 23 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 24 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 25 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 26 H 0.09 1.50 7.85 -2.38 -0.02 1.48 16 27 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.10 1.11 7.30 -2.39 -0.02 1.09 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.41 6.75 7.31 -92.71 -0.68 6.07 16 33 H 0.42 10.25 8.93 -92.71 -0.83 9.42 16 Total: -1.00 -89.84 276.16 1.38 -88.45 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -0.39 Total: 6.84 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 4.17 Total: 12.62 kcal Atomic # 7 Polarization: -101.55 SS G_CDS: -3.82 Total: -105.37 kcal Atomic # 8 Polarization: -52.84 SS G_CDS: -0.61 Total: -53.44 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 2.03 Total: 50.90 kcal Total: -89.84 1.38 -88.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260269417.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.970 kcal (2) G-P(sol) polarization free energy of solvation -89.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds