Wall clock time and date at job start Mon Mar 30 2020 03:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47166 * 2 1 4 4 C 1.53005 * 109.46836 * 119.99746 * 2 1 3 5 5 H 1.08998 * 109.47393 * 54.21929 * 4 2 1 6 6 C 1.53003 * 109.47047 * 174.21915 * 4 2 1 7 7 C 1.50701 * 109.46948 * 294.00428 * 6 4 2 8 8 H 1.07998 * 120.00084 * 354.86825 * 7 6 4 9 9 C 1.37877 * 119.99856 * 174.86737 * 7 6 4 10 10 N 1.31518 * 119.99899 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00247 * 359.97438 * 9 7 6 12 12 H 1.48494 * 109.46971 * 270.00010 * 11 9 7 13 13 H 1.48504 * 109.47000 * 29.99620 * 11 9 7 14 14 H 1.48494 * 109.47093 * 149.99904 * 11 9 7 15 15 C 1.52998 * 109.46870 * 294.21416 * 4 2 1 16 16 H 1.08995 * 110.70261 * 310.48105 * 15 4 2 17 17 C 1.54259 * 110.78611 * 187.16250 * 15 4 2 18 18 C 1.52332 * 112.58987 * 217.20107 * 17 15 4 19 19 C 1.54258 * 112.58650 * 0.02562 * 18 17 15 20 20 S 1.83956 * 110.78721 * 73.79718 * 15 4 2 21 21 H 1.08996 * 109.47710 * 308.65707 * 1 2 3 22 22 H 1.09000 * 109.47094 * 68.66091 * 1 2 3 23 23 H 1.09001 * 109.47075 * 188.65534 * 1 2 3 24 24 H 1.08998 * 109.47648 * 239.99544 * 2 1 3 25 25 H 1.09003 * 109.47320 * 183.67292 * 3 2 1 26 26 H 1.09006 * 109.46980 * 303.66606 * 3 2 1 27 27 H 1.08993 * 109.47358 * 63.66389 * 3 2 1 28 28 H 1.08990 * 109.47040 * 174.00453 * 6 4 2 29 29 H 1.09006 * 109.47285 * 53.99662 * 6 4 2 30 30 H 0.96996 * 119.99920 * 180.02562 * 10 9 7 31 31 H 1.09003 * 108.86904 * 338.02119 * 17 15 4 32 32 H 1.08999 * 108.86587 * 96.38265 * 17 15 4 33 33 H 1.09003 * 108.86952 * 120.81884 * 18 17 15 34 34 H 1.09001 * 108.86940 * 239.32218 * 18 17 15 35 35 H 1.09001 * 110.78655 * 142.80230 * 19 18 17 36 36 H 1.09002 * 110.78537 * 266.05850 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.5945 -1.7146 1.3027 6 6 3.5630 -0.8483 1.1789 7 6 3.9389 -1.7582 0.0378 8 1 3.1690 -2.2668 -0.5234 9 6 5.2656 -1.9412 -0.2896 10 7 5.5937 -2.7357 -1.2851 11 14 6.5972 -1.0609 0.6805 12 1 6.8806 0.2540 0.0514 13 1 6.1365 -0.8526 2.0768 14 1 7.8330 -1.8843 0.6846 15 6 1.6521 0.0792 2.4942 16 1 1.9279 1.1274 2.3798 17 6 2.3020 -0.5233 3.7569 18 6 1.3871 -0.4594 4.9732 19 6 0.0252 0.1922 4.6565 20 16 -0.1462 -0.0882 2.8440 21 1 -0.3634 0.6419 0.8024 22 1 -0.3633 0.3740 -0.9572 23 1 -0.3633 -1.0160 0.1547 24 1 1.8934 -0.5139 -0.8899 25 1 3.1280 1.4432 -0.0658 26 1 1.6240 1.9749 -0.8554 27 1 1.7313 1.9370 0.9209 28 1 3.9365 -1.2651 2.1141 29 1 4.0028 0.1361 1.0185 30 1 6.5271 -2.8647 -1.5152 31 1 2.5548 -1.5652 3.5603 32 1 3.2189 0.0236 3.9764 33 1 1.2164 -1.4717 5.3395 34 1 1.8796 0.1191 5.7547 35 1 -0.7771 -0.3028 5.2038 36 1 0.0447 1.2584 4.8823 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260613066.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:51 Heat of formation + Delta-G solvation = -29.932070 kcal Electronic energy + Delta-G solvation = -14738.012068 eV Core-core repulsion = 12540.179118 eV Total energy + Delta-G solvation = -2197.832950 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.124 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -37.93200 -35.04641 -32.68061 -30.59332 -28.57138 -26.64342 -25.70580 -23.47843 -21.48054 -20.27369 -18.07082 -16.95068 -16.26713 -15.15269 -14.72226 -14.32058 -13.98073 -13.50393 -13.23275 -12.95815 -12.57428 -12.46992 -12.10782 -11.70065 -11.35682 -11.31016 -11.19604 -10.93932 -10.62765 -10.52298 -10.34222 -10.05913 -9.75261 -9.57894 -9.39489 -9.28272 -8.96875 -8.51850 -7.34996 -6.03668 -4.00453 2.20191 2.66163 3.28738 3.37078 3.39040 4.44333 4.72566 4.90465 5.11674 5.26235 5.32359 5.38593 5.54011 5.64401 5.70181 5.72388 5.85743 5.88650 6.09677 6.17018 6.22432 6.34783 6.37813 6.46232 6.55954 6.61960 6.66053 6.83404 6.94236 7.20066 7.31948 7.41446 7.79257 8.54887 9.02196 9.58882 11.09790 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.029577 B = 0.009188 C = 0.007808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.466709 B = 3046.814427 C = 3585.351045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.087 4.087 3 C -0.146 4.146 4 C -0.051 4.051 5 H 0.074 0.926 6 C -0.006 4.006 7 C -0.512 4.512 8 H 0.074 0.926 9 C 0.067 3.933 10 N -0.903 5.903 11 Si 0.875 3.125 12 H -0.278 1.278 13 H -0.266 1.266 14 H -0.289 1.289 15 C -0.022 4.022 16 H 0.094 0.906 17 C -0.127 4.127 18 C -0.122 4.122 19 C -0.092 4.092 20 S -0.289 6.289 21 H 0.069 0.931 22 H 0.045 0.955 23 H 0.052 0.948 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.017 0.983 29 H 0.016 0.984 30 H 0.262 0.738 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.306 7.271 9.968 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.105 4.105 3 C -0.203 4.203 4 C -0.070 4.070 5 H 0.092 0.908 6 C -0.044 4.044 7 C -0.550 4.550 8 H 0.092 0.908 9 C -0.134 4.134 10 N -0.542 5.542 11 Si 0.703 3.297 12 H -0.204 1.204 13 H -0.191 1.191 14 H -0.215 1.215 15 C -0.150 4.150 16 H 0.112 0.888 17 C -0.166 4.166 18 C -0.160 4.160 19 C -0.240 4.240 20 S -0.060 6.060 21 H 0.087 0.913 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.106 0.894 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.163 6.987 9.207 14.750 hybrid contribution 1.810 0.631 1.185 2.254 sum -7.353 7.618 10.392 14.835 Atomic orbital electron populations 1.22089 0.96567 1.02107 1.00680 1.21063 0.93914 0.95918 0.99605 1.21922 1.01780 0.96446 1.00187 1.21123 0.98745 0.97368 0.89801 0.90777 1.19715 0.90146 0.96926 0.97662 1.21087 0.93087 1.26389 1.14443 0.90834 1.24999 0.98590 0.94998 0.94806 1.69910 1.17750 1.37832 1.28757 0.86852 0.81689 0.79865 0.81320 1.20366 1.19106 1.21510 1.24319 0.88922 1.03240 0.98511 0.88779 1.22163 0.98775 1.03517 0.92158 1.21979 0.93915 1.01458 0.98696 1.24232 0.99804 1.03054 0.96890 1.88197 1.16091 1.95181 1.06526 0.91272 0.93559 0.92870 0.89380 0.92009 0.93706 0.93426 0.96445 0.96549 0.92813 0.89846 0.91131 0.91157 0.91668 0.88831 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 7.80 37.16 0.29 -2.27 16 2 C -0.09 -1.60 2.60 -90.62 -0.24 -1.84 16 3 C -0.15 -2.47 8.52 37.16 0.32 -2.15 16 4 C -0.05 -0.97 1.23 -90.62 -0.11 -1.08 16 5 H 0.07 1.54 8.09 -51.93 -0.42 1.12 16 6 C -0.01 -0.13 3.17 -27.88 -0.09 -0.21 16 7 C -0.51 -14.00 8.78 -34.44 -0.30 -14.30 16 8 H 0.07 2.19 7.60 -52.49 -0.40 1.79 16 9 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 10 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 11 Si 0.88 21.31 27.37 -169.99 -4.65 16.65 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.27 -6.17 6.69 56.52 0.38 -5.79 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 C -0.02 -0.36 2.55 -26.07 -0.07 -0.42 16 16 H 0.09 1.49 5.78 -51.93 -0.30 1.19 16 17 C -0.13 -1.90 4.75 -26.41 -0.13 -2.02 16 18 C -0.12 -1.48 6.31 -26.41 -0.17 -1.64 16 19 C -0.09 -1.11 7.47 37.82 0.28 -0.82 16 20 S -0.29 -4.39 18.73 -107.50 -2.01 -6.41 16 21 H 0.07 1.11 5.27 -34.81 -0.18 0.92 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.90 8.06 -51.93 -0.42 0.48 16 24 H 0.09 1.87 6.99 -51.93 -0.36 1.51 16 25 H 0.06 1.13 6.64 -51.93 -0.34 0.78 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.73 5.91 -51.93 -0.31 0.42 16 28 H 0.02 0.39 5.84 -51.93 -0.30 0.09 16 29 H 0.02 0.37 5.56 -51.93 -0.29 0.08 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.08 1.37 7.04 -51.93 -0.37 1.00 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 277.69 15.07 4.18 4.18 Total: -1.00 -28.74 277.69 -7.82 -36.57 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.81 Total: 0.67 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: -0.30 Total: -24.96 kcal Atomic # 7 Polarization: -27.48 SS G_CDS: 0.77 Total: -26.71 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.65 Total: 16.65 kcal Atomic # 16 Polarization: -4.39 SS G_CDS: -2.01 Total: -6.41 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.74 -7.82 -36.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260613066.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.634 kcal (2) G-P(sol) polarization free energy of solvation -28.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds