Wall clock time and date at job start Mon Mar 30 2020 03:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47166 * 2 1 4 4 C 1.53005 * 109.46836 * 119.99746 * 2 1 3 5 5 H 1.08998 * 109.47393 * 54.21929 * 4 2 1 6 6 C 1.53003 * 109.47047 * 174.21915 * 4 2 1 7 7 C 1.50701 * 109.46948 * 294.00428 * 6 4 2 8 8 H 1.07998 * 120.00084 * 354.86825 * 7 6 4 9 9 C 1.37877 * 119.99856 * 174.86737 * 7 6 4 10 10 N 1.31518 * 119.99899 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00247 * 359.97438 * 9 7 6 12 12 H 1.48494 * 109.46971 * 270.00010 * 11 9 7 13 13 H 1.48504 * 109.47000 * 29.99620 * 11 9 7 14 14 H 1.48494 * 109.47093 * 149.99904 * 11 9 7 15 15 C 1.52998 * 109.46870 * 294.21416 * 4 2 1 16 16 H 1.08995 * 110.70261 * 310.48105 * 15 4 2 17 17 C 1.54259 * 110.78611 * 187.16250 * 15 4 2 18 18 C 1.52332 * 112.58987 * 217.20107 * 17 15 4 19 19 C 1.54258 * 112.58650 * 0.02562 * 18 17 15 20 20 S 1.83956 * 110.78721 * 73.79718 * 15 4 2 21 21 H 1.08996 * 109.47710 * 308.65707 * 1 2 3 22 22 H 1.09000 * 109.47094 * 68.66091 * 1 2 3 23 23 H 1.09001 * 109.47075 * 188.65534 * 1 2 3 24 24 H 1.08998 * 109.47648 * 239.99544 * 2 1 3 25 25 H 1.09003 * 109.47320 * 183.67292 * 3 2 1 26 26 H 1.09006 * 109.46980 * 303.66606 * 3 2 1 27 27 H 1.08993 * 109.47358 * 63.66389 * 3 2 1 28 28 H 1.08990 * 109.47040 * 174.00453 * 6 4 2 29 29 H 1.09006 * 109.47285 * 53.99662 * 6 4 2 30 30 H 0.96996 * 119.99920 * 180.02562 * 10 9 7 31 31 H 1.09003 * 108.86904 * 338.02119 * 17 15 4 32 32 H 1.08999 * 108.86587 * 96.38265 * 17 15 4 33 33 H 1.09003 * 108.86952 * 120.81884 * 18 17 15 34 34 H 1.09001 * 108.86940 * 239.32218 * 18 17 15 35 35 H 1.09001 * 110.78655 * 142.80230 * 19 18 17 36 36 H 1.09002 * 110.78537 * 266.05850 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.5945 -1.7146 1.3027 6 6 3.5630 -0.8483 1.1789 7 6 3.9389 -1.7582 0.0378 8 1 3.1690 -2.2668 -0.5234 9 6 5.2656 -1.9412 -0.2896 10 7 5.5937 -2.7357 -1.2851 11 14 6.5972 -1.0609 0.6805 12 1 6.8806 0.2540 0.0514 13 1 6.1365 -0.8526 2.0768 14 1 7.8330 -1.8843 0.6846 15 6 1.6521 0.0792 2.4942 16 1 1.9279 1.1274 2.3798 17 6 2.3020 -0.5233 3.7569 18 6 1.3871 -0.4594 4.9732 19 6 0.0252 0.1922 4.6565 20 16 -0.1462 -0.0882 2.8440 21 1 -0.3634 0.6419 0.8024 22 1 -0.3633 0.3740 -0.9572 23 1 -0.3633 -1.0160 0.1547 24 1 1.8934 -0.5139 -0.8899 25 1 3.1280 1.4432 -0.0658 26 1 1.6240 1.9749 -0.8554 27 1 1.7313 1.9370 0.9209 28 1 3.9365 -1.2651 2.1141 29 1 4.0028 0.1361 1.0185 30 1 6.5271 -2.8647 -1.5152 31 1 2.5548 -1.5652 3.5603 32 1 3.2189 0.0236 3.9764 33 1 1.2164 -1.4717 5.3395 34 1 1.8796 0.1191 5.7547 35 1 -0.7771 -0.3028 5.2038 36 1 0.0447 1.2584 4.8823 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260613066.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:51 Heat of formation + Delta-G solvation = -45.436680 kcal Electronic energy + Delta-G solvation = -14738.684398 eV Core-core repulsion = 12540.179118 eV Total energy + Delta-G solvation = -2198.505280 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.124 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.40895 -36.19267 -34.77995 -32.16992 -30.11206 -28.02676 -27.06131 -25.00632 -23.20294 -21.45703 -19.59324 -18.93962 -17.58778 -16.39461 -16.24035 -16.01876 -15.43431 -14.89756 -14.60369 -14.39873 -14.30315 -13.71395 -13.61769 -13.26779 -12.81317 -12.67652 -12.56388 -12.30889 -12.18240 -12.04310 -11.77097 -11.72368 -11.36572 -11.14624 -10.97294 -10.94277 -10.69772 -10.38919 -8.54055 -8.24559 -6.26301 1.05020 1.36163 1.37801 1.49197 1.54169 2.38185 3.11159 3.61016 3.79465 4.01617 4.06540 4.18739 4.24880 4.38449 4.42009 4.51536 4.65641 4.81797 4.87145 4.88164 4.94388 4.99524 5.10135 5.11557 5.15470 5.20914 5.23407 5.29434 5.42663 5.58650 5.64233 5.71089 5.76300 6.34725 6.80398 7.36335 8.92531 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.029577 B = 0.009188 C = 0.007808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.466709 B = 3046.814427 C = 3585.351045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.044 4.044 5 H 0.047 0.953 6 C 0.001 3.999 7 C -0.514 4.514 8 H 0.028 0.972 9 C 0.003 3.997 10 N -0.955 5.955 11 Si 0.944 3.056 12 H -0.267 1.267 13 H -0.242 1.242 14 H -0.289 1.289 15 C -0.017 4.017 16 H 0.105 0.895 17 C -0.130 4.130 18 C -0.118 4.118 19 C -0.077 4.077 20 S -0.321 6.321 21 H 0.082 0.918 22 H 0.057 0.943 23 H 0.040 0.960 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.023 0.977 29 H 0.025 0.975 30 H 0.263 0.737 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.615 9.569 12.772 18.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 C -0.197 4.197 4 C -0.064 4.064 5 H 0.065 0.935 6 C -0.038 4.038 7 C -0.552 4.552 8 H 0.047 0.953 9 C -0.193 4.193 10 N -0.596 5.596 11 Si 0.767 3.233 12 H -0.193 1.193 13 H -0.165 1.165 14 H -0.215 1.215 15 C -0.145 4.145 16 H 0.123 0.877 17 C -0.169 4.169 18 C -0.157 4.157 19 C -0.224 4.224 20 S -0.092 6.092 21 H 0.100 0.900 22 H 0.076 0.924 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.129 0.871 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.494 9.290 12.021 17.915 hybrid contribution 1.808 -0.160 0.283 1.837 sum -7.686 9.131 12.303 17.141 Atomic orbital electron populations 1.21980 0.94719 1.01757 1.01861 1.20998 0.95492 0.96696 0.97470 1.21867 1.00634 0.95231 1.02014 1.20899 0.96302 0.96947 0.92243 0.93465 1.19612 0.92761 0.95862 0.95532 1.21383 0.92200 1.26411 1.15218 0.95320 1.25964 1.01426 0.95959 0.95968 1.70080 1.18367 1.40112 1.31076 0.85748 0.78014 0.78645 0.80846 1.19256 1.16520 1.21491 1.24101 0.90098 1.02955 0.97362 0.87735 1.22201 0.99919 1.02051 0.92732 1.21935 0.93598 1.02391 0.97767 1.24354 1.00213 1.04537 0.93311 1.88271 1.14928 1.95391 1.10647 0.89998 0.92422 0.94107 0.93560 0.93657 0.92215 0.91287 0.95915 0.95656 0.92776 0.92078 0.90316 0.90764 0.89057 0.87059 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.72 7.80 71.98 0.56 -4.16 16 2 C -0.09 -3.30 2.60 -10.79 -0.03 -3.33 16 3 C -0.14 -4.55 8.52 71.98 0.61 -3.94 16 4 C -0.04 -1.71 1.23 -10.79 -0.01 -1.73 16 5 H 0.05 2.05 8.09 -2.39 -0.02 2.04 16 6 C 0.00 0.05 3.17 29.85 0.09 0.15 16 7 C -0.51 -29.28 8.78 25.60 0.22 -29.06 16 8 H 0.03 1.83 7.60 -2.91 -0.02 1.81 16 9 C 0.00 0.16 5.47 84.65 0.46 0.63 16 10 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 11 Si 0.94 43.80 27.37 68.60 1.88 45.67 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 13 H -0.24 -10.19 6.69 99.48 0.67 -9.52 16 14 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 15 C -0.02 -0.53 2.55 31.02 0.08 -0.45 16 16 H 0.10 2.99 5.78 -2.39 -0.01 2.98 16 17 C -0.13 -3.55 4.75 30.80 0.15 -3.41 16 18 C -0.12 -2.41 6.31 30.80 0.19 -2.22 16 19 C -0.08 -1.52 7.47 72.41 0.54 -0.98 16 20 S -0.32 -9.05 18.73 -56.49 -1.06 -10.11 16 21 H 0.08 2.49 5.27 -13.28 -0.07 2.42 16 22 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.04 1.40 8.06 -2.39 -0.02 1.38 16 24 H 0.05 2.09 6.99 -2.39 -0.02 2.08 16 25 H 0.04 1.60 6.64 -2.39 -0.02 1.58 16 26 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 27 H 0.07 1.93 5.91 -2.39 -0.01 1.92 16 28 H 0.02 1.00 5.84 -2.39 -0.01 0.99 16 29 H 0.03 1.11 5.56 -2.38 -0.01 1.09 16 30 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 31 H 0.06 1.93 7.04 -2.39 -0.02 1.92 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -64.49 277.69 4.93 -59.56 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.94 Total: 13.44 kcal Atomic # 6 Polarization: -51.37 SS G_CDS: 2.88 Total: -48.49 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.30 Total: -60.07 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.67 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.06 Total: -10.11 kcal Total: -64.49 4.93 -59.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260613066.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.124 kcal (2) G-P(sol) polarization free energy of solvation -64.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds