Wall clock time and date at job start Mon Mar 30 2020 03:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46921 * 2 1 4 4 C 1.53007 * 109.47045 * 240.00423 * 2 1 3 5 5 C 1.52992 * 109.47160 * 120.00165 * 2 1 3 6 6 C 1.50696 * 109.22377 * 300.59940 * 5 2 1 7 7 H 1.08006 * 119.99907 * 264.55325 * 6 5 2 8 8 C 1.37878 * 120.00331 * 84.55109 * 6 5 2 9 9 N 1.31518 * 119.99865 * 352.41872 * 8 6 5 10 10 Si 1.86802 * 120.00271 * 172.41717 * 8 6 5 11 11 H 1.48503 * 109.47079 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47014 * 119.99804 * 10 8 6 13 13 H 1.48493 * 109.47099 * 240.00317 * 10 8 6 14 14 C 1.52842 * 109.14708 * 181.27699 * 5 2 1 15 15 C 1.53097 * 109.81905 * 169.09651 * 14 5 2 16 16 S 1.81750 * 108.94441 * 62.95525 * 15 14 5 17 17 C 1.81750 * 102.21906 * 306.66792 * 16 15 14 18 18 C 1.52582 * 109.22634 * 59.99859 * 5 2 1 19 19 H 1.08992 * 109.47138 * 299.99950 * 1 2 3 20 20 H 1.09004 * 109.46838 * 60.00068 * 1 2 3 21 21 H 1.08995 * 109.47241 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46777 * 180.02562 * 3 2 1 23 23 H 1.08996 * 109.46998 * 299.99628 * 3 2 1 24 24 H 1.09002 * 109.47162 * 60.00086 * 3 2 1 25 25 H 1.09000 * 109.46515 * 299.99822 * 4 2 1 26 26 H 1.09000 * 109.47214 * 60.00036 * 4 2 1 27 27 H 1.08997 * 109.46682 * 180.02562 * 4 2 1 28 28 H 0.96997 * 120.00253 * 180.02562 * 9 8 6 29 29 H 1.09000 * 109.57232 * 48.92372 * 14 5 2 30 30 H 1.08993 * 109.34568 * 289.14175 * 14 5 2 31 31 H 1.08996 * 109.58063 * 303.08121 * 15 14 5 32 32 H 1.09000 * 109.57556 * 182.81848 * 15 14 5 33 33 H 1.09005 * 109.57392 * 173.07571 * 17 16 15 34 34 H 1.09002 * 109.57261 * 293.32466 * 17 16 15 35 35 H 1.09007 * 109.38666 * 70.80807 * 18 5 2 36 36 H 1.08991 * 109.31408 * 311.05379 * 18 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0400 -0.7212 1.2491 6 6 1.5225 -0.0152 2.4758 7 1 2.1347 0.7230 2.9726 8 6 0.2675 -0.3116 2.9639 9 7 -0.5358 -1.0964 2.2795 10 14 -0.2917 0.4016 4.5974 11 1 0.7893 1.2472 5.1644 12 1 -1.5070 1.2284 4.3863 13 1 -0.6022 -0.7034 5.5396 14 6 3.5681 -0.6891 1.2578 15 6 4.0894 -1.1594 2.6183 16 16 3.5889 -2.8874 2.8767 17 6 1.7938 -2.8132 2.6018 18 6 1.5283 -2.1587 1.2435 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 3.1300 1.4425 -0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6766 1.9564 0.8900 25 1 1.6766 -1.7488 -1.2493 26 1 1.6767 -0.2073 -2.1393 27 1 3.1300 -0.7216 -1.2491 28 1 -1.4188 -1.3046 2.6227 29 1 3.9130 0.3277 1.0700 30 1 3.9475 -1.3483 0.4772 31 1 3.6682 -0.5354 3.4065 32 1 5.1769 -1.0875 2.6374 33 1 1.3814 -3.8222 2.6079 34 1 1.3276 -2.2234 3.3910 35 1 2.0410 -2.7222 0.4638 36 1 0.4566 -2.1591 1.0450 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261127958.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:53 Heat of formation + Delta-G solvation = -3.647608 kcal Electronic energy + Delta-G solvation = -15878.270712 eV Core-core repulsion = 13681.577542 eV Total energy + Delta-G solvation = -2196.693170 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.124 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.68309 -33.20170 -32.22522 -30.00802 -26.79403 -26.03652 -25.89352 -24.18239 -21.54166 -19.79522 -17.71223 -16.11055 -15.12370 -14.53159 -14.45223 -13.42460 -13.25586 -13.03910 -12.87217 -12.24937 -11.88613 -11.73334 -11.58044 -11.31841 -11.02376 -10.84211 -10.61461 -10.56841 -10.51084 -10.25986 -9.96337 -9.77965 -9.53539 -9.24423 -8.69368 -8.48804 -8.38450 -8.16142 -6.69307 -5.93604 -4.11207 2.96642 3.22098 3.32603 3.36034 3.66794 4.33555 5.13716 5.81019 5.93706 6.01704 6.14614 6.15453 6.26336 6.39715 6.45821 6.52954 6.60768 6.63211 6.77796 6.82748 6.89131 6.92070 6.97869 7.07021 7.22211 7.38344 7.39203 7.51207 7.63427 7.68340 7.85423 8.09884 8.26566 8.41836 8.88239 9.50316 10.90597 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.020097 B = 0.018015 C = 0.012360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.927682 B = 1553.849041 C = 2264.869486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.048 4.048 3 C -0.128 4.128 4 C -0.143 4.143 5 C 0.074 3.926 6 C -0.496 4.496 7 H 0.055 0.945 8 C 0.066 3.934 9 N -0.872 5.872 10 Si 0.878 3.122 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.284 1.284 14 C -0.108 4.108 15 C -0.049 4.049 16 S -0.351 6.351 17 C -0.031 4.031 18 C -0.106 4.106 19 H 0.077 0.923 20 H -0.005 1.005 21 H 0.062 0.938 22 H 0.038 0.962 23 H 0.026 0.974 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.032 0.968 27 H 0.041 0.959 28 H 0.257 0.743 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.017 0.983 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.953 0.511 -2.507 3.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.048 4.048 3 C -0.185 4.185 4 C -0.200 4.200 5 C 0.073 3.927 6 C -0.534 4.534 7 H 0.073 0.927 8 C -0.134 4.134 9 N -0.512 5.512 10 Si 0.706 3.294 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.210 1.210 14 C -0.147 4.147 15 C -0.197 4.197 16 S -0.126 6.126 17 C -0.178 4.178 18 C -0.145 4.145 19 H 0.096 0.904 20 H 0.014 0.986 21 H 0.080 0.920 22 H 0.057 0.943 23 H 0.045 0.955 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.118 0.882 35 H 0.036 0.964 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.396 -0.453 -2.204 4.074 hybrid contribution -0.996 1.371 0.644 1.813 sum 2.400 0.918 -1.560 3.006 Atomic orbital electron populations 1.21901 0.93925 1.02022 0.98572 1.20594 0.96406 0.93741 0.94061 1.21817 0.99107 0.97506 1.00117 1.22028 0.99715 1.00342 0.97940 1.18146 0.88623 0.92831 0.93068 1.21081 1.00269 1.21960 1.10086 0.92681 1.24793 0.96483 0.95440 0.96725 1.70081 1.08056 1.36918 1.36108 0.86734 0.78705 0.79128 0.84784 1.19949 1.21169 1.20969 1.21911 0.99460 0.99408 0.93886 1.23205 1.00471 0.93610 1.02434 1.86033 1.15383 1.17200 1.94001 1.23375 0.88165 1.01940 1.04348 1.21968 1.05928 0.94809 0.91781 0.90395 0.98580 0.91951 0.94325 0.95513 0.92053 0.93214 0.94893 0.94034 0.93235 0.92467 0.93522 0.89173 0.91162 0.91837 0.88158 0.96392 0.85200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.32 6.71 37.16 0.25 -2.07 16 2 C -0.05 -0.97 0.34 -154.51 -0.05 -1.02 16 3 C -0.13 -2.47 7.87 37.16 0.29 -2.17 16 4 C -0.14 -2.65 7.81 37.16 0.29 -2.36 16 5 C 0.07 1.58 0.06 -155.96 -0.01 1.57 16 6 C -0.50 -11.58 4.13 -34.44 -0.14 -11.72 16 7 H 0.06 1.34 7.13 -52.48 -0.37 0.97 16 8 C 0.07 1.56 2.38 -17.82 -0.04 1.52 16 9 N -0.87 -20.73 6.77 55.43 0.38 -20.36 16 10 Si 0.88 19.62 29.54 -169.99 -5.02 14.59 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 12 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 14 C -0.11 -2.15 3.92 -26.76 -0.10 -2.26 16 15 C -0.05 -0.98 6.15 37.21 0.23 -0.75 16 16 S -0.35 -7.35 22.33 -107.50 -2.40 -9.75 16 17 C -0.03 -0.68 5.77 37.21 0.21 -0.47 16 18 C -0.11 -2.34 3.24 -26.90 -0.09 -2.43 16 19 H 0.08 1.86 5.43 -51.93 -0.28 1.58 16 20 H 0.00 -0.10 8.14 -51.93 -0.42 -0.52 16 21 H 0.06 1.41 5.67 -51.93 -0.29 1.11 16 22 H 0.04 0.69 6.15 -51.93 -0.32 0.38 16 23 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 1.26 7.22 -51.93 -0.38 0.88 16 25 H 0.05 0.93 6.66 -51.93 -0.35 0.59 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.73 6.69 -51.93 -0.35 0.38 16 28 H 0.26 6.04 8.31 -40.82 -0.34 5.70 16 29 H 0.06 1.10 5.83 -51.93 -0.30 0.80 16 30 H 0.05 0.92 6.95 -51.93 -0.36 0.56 16 31 H 0.09 1.90 6.45 -51.93 -0.33 1.56 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.35 8.14 -51.92 -0.42 0.93 16 34 H 0.10 2.41 5.33 -51.93 -0.28 2.14 16 35 H 0.02 0.39 6.94 -51.92 -0.36 0.03 16 36 H 0.13 3.08 3.80 -51.93 -0.20 2.88 16 LS Contribution 257.61 15.07 3.88 3.88 Total: -1.00 -23.05 257.61 -7.75 -30.80 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -5.42 Total: 2.98 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 0.84 Total: -22.15 kcal Atomic # 7 Polarization: -20.73 SS G_CDS: 0.38 Total: -20.36 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.59 kcal Atomic # 16 Polarization: -7.35 SS G_CDS: -2.40 Total: -9.75 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -23.05 -7.75 -30.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261127958.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.153 kcal (2) G-P(sol) polarization free energy of solvation -23.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds