Wall clock time and date at job start Mon Mar 30 2020 03:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47433 * 2 1 4 4 C 1.52996 * 109.47298 * 120.00116 * 2 1 3 5 5 C 1.53009 * 109.47160 * 67.14126 * 4 2 1 6 6 C 1.50697 * 109.38730 * 293.41438 * 5 4 2 7 7 H 1.08003 * 120.00008 * 117.24272 * 6 5 4 8 8 C 1.37877 * 120.00535 * 297.24107 * 6 5 4 9 9 N 1.31514 * 119.99418 * 2.65514 * 8 6 5 10 10 Si 1.86797 * 120.00240 * 182.64739 * 8 6 5 11 11 H 1.48502 * 109.46777 * 90.00276 * 10 8 6 12 12 H 1.48498 * 109.47198 * 210.00177 * 10 8 6 13 13 H 1.48502 * 109.47387 * 330.00414 * 10 8 6 14 14 C 1.52583 * 109.38981 * 173.61398 * 5 4 2 15 15 C 1.52585 * 110.68952 * 169.19685 * 14 5 4 16 16 C 1.53019 * 109.99322 * 70.70542 * 15 14 5 17 17 S 1.81750 * 108.81472 * 296.93499 * 16 15 14 18 18 C 1.53096 * 109.38529 * 53.11954 * 5 4 2 19 19 H 1.09001 * 109.47018 * 288.50935 * 1 2 3 20 20 H 1.09002 * 109.47368 * 48.50625 * 1 2 3 21 21 H 1.08998 * 109.47656 * 168.51485 * 1 2 3 22 22 H 1.08997 * 109.46954 * 240.00035 * 2 1 3 23 23 H 1.09000 * 109.46648 * 64.85152 * 3 2 1 24 24 H 1.08994 * 109.46828 * 184.85064 * 3 2 1 25 25 H 1.09003 * 109.46746 * 304.84891 * 3 2 1 26 26 H 1.08998 * 109.47151 * 307.14167 * 4 2 1 27 27 H 1.08995 * 109.47270 * 187.14066 * 4 2 1 28 28 H 0.97006 * 119.99678 * 180.02562 * 9 8 6 29 29 H 1.09003 * 109.22120 * 289.49711 * 14 5 4 30 30 H 1.08997 * 109.22572 * 48.89970 * 14 5 4 31 31 H 1.08998 * 109.38318 * 190.80091 * 15 14 5 32 32 H 1.09001 * 109.38832 * 310.50803 * 15 14 5 33 33 H 1.08999 * 109.58578 * 177.13776 * 16 15 14 34 34 H 1.09002 * 109.70404 * 56.80255 * 16 15 14 35 35 H 1.09001 * 109.57817 * 302.97394 * 18 5 4 36 36 H 1.08993 * 109.57801 * 63.37386 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6817 -2.2063 1.1627 6 6 0.1848 -2.3647 1.2344 7 1 -0.3542 -2.7869 0.3991 8 6 -0.4969 -1.9708 2.3663 9 7 0.1523 -1.4088 3.3625 10 14 -2.3423 -2.2350 2.4847 11 1 -2.6142 -3.5656 3.0856 12 1 -2.9404 -1.1757 3.3364 13 1 -2.9393 -2.1740 1.1264 14 6 2.3263 -2.9516 2.3277 15 6 1.7795 -4.3726 2.4273 16 6 2.2984 -5.2158 1.2606 17 16 1.6729 -4.5129 -0.2944 18 6 2.1880 -2.7747 -0.1656 19 1 -0.3633 0.3262 0.9745 20 1 -0.3634 0.6809 -0.7698 21 1 -0.3634 -1.0070 -0.2046 22 1 1.8932 -0.5138 -0.8900 23 1 1.7494 1.9306 0.9303 24 1 3.1265 1.4436 -0.0869 25 1 1.6075 1.9808 -0.8434 26 1 1.5761 -0.2865 2.1346 27 1 3.1224 -0.6120 1.3153 28 1 -0.3272 -1.1320 4.1590 29 1 3.4049 -2.9918 2.1752 30 1 2.1146 -2.4197 3.2552 31 1 2.1028 -4.8195 3.3674 32 1 0.6902 -4.3441 2.3973 33 1 1.9453 -6.2416 1.3658 34 1 3.3883 -5.2036 1.2546 35 1 1.7627 -2.2056 -0.9922 36 1 3.2757 -2.7128 -0.1984 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261150858.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:47 Heat of formation + Delta-G solvation = -31.227015 kcal Electronic energy + Delta-G solvation = -15476.995012 eV Core-core repulsion = 13279.105909 eV Total energy + Delta-G solvation = -2197.889103 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.124 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.60026 -35.86449 -33.84268 -32.14934 -28.21808 -27.79378 -26.89712 -26.46086 -22.89578 -20.77614 -20.16555 -17.81887 -17.24416 -16.64700 -15.71510 -15.43578 -15.08541 -14.59169 -14.28095 -14.11189 -13.85417 -13.48219 -13.22554 -13.00031 -12.78559 -12.66945 -12.46534 -12.14848 -11.94833 -11.74191 -11.60353 -11.43975 -11.27892 -11.07020 -10.68882 -10.61758 -10.06842 -9.95861 -8.23893 -7.82454 -5.79606 1.24795 1.42724 1.49550 1.54348 1.95898 2.56611 3.43054 4.17047 4.21112 4.33895 4.39174 4.47094 4.52823 4.65125 4.68156 4.84456 4.87243 5.02135 5.03636 5.10231 5.15936 5.18646 5.28027 5.48358 5.52391 5.53264 5.73509 5.78454 5.85525 5.94557 6.02671 6.16889 6.35051 6.63710 7.09797 7.72402 9.16932 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.019178 B = 0.016312 C = 0.011331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.636891 B = 1716.126554 C = 2470.532594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.083 4.083 3 C -0.139 4.139 4 C -0.091 4.091 5 C 0.066 3.934 6 C -0.452 4.452 7 H 0.051 0.949 8 C 0.039 3.961 9 N -0.903 5.903 10 Si 0.906 3.094 11 H -0.288 1.288 12 H -0.296 1.296 13 H -0.275 1.275 14 C -0.103 4.103 15 C -0.104 4.104 16 C -0.059 4.059 17 S -0.312 6.312 18 C -0.050 4.050 19 H 0.027 0.973 20 H 0.031 0.969 21 H 0.068 0.932 22 H 0.060 0.940 23 H 0.039 0.961 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.020 0.980 28 H 0.250 0.750 29 H 0.023 0.977 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.591 -0.868 -4.042 6.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.101 4.101 3 C -0.196 4.196 4 C -0.130 4.130 5 C 0.064 3.936 6 C -0.491 4.491 7 H 0.069 0.931 8 C -0.158 4.158 9 N -0.544 5.544 10 Si 0.736 3.264 11 H -0.215 1.215 12 H -0.223 1.223 13 H -0.200 1.200 14 C -0.141 4.141 15 C -0.142 4.142 16 C -0.207 4.207 17 S -0.085 6.085 18 C -0.198 4.198 19 H 0.046 0.954 20 H 0.050 0.950 21 H 0.087 0.913 22 H 0.078 0.922 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.039 0.961 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.992 -1.339 -4.715 6.321 hybrid contribution -0.622 0.543 1.454 1.672 sum 3.370 -0.795 -3.261 4.756 Atomic orbital electron populations 1.21940 0.95917 1.01812 0.98756 1.20992 0.95875 0.95282 0.97973 1.21817 1.00538 0.96379 1.00871 1.21546 0.96096 0.96971 0.98429 1.18295 0.94695 0.91896 0.88677 1.20909 0.91521 1.36933 0.99737 0.93104 1.25006 0.98366 0.96104 0.96373 1.69895 1.35079 1.42829 1.06621 0.86366 0.85569 0.76916 0.77580 1.21514 1.22301 1.19988 1.21360 0.95224 0.95366 1.02169 1.21472 1.01871 0.95298 0.95572 1.23292 1.02232 1.01337 0.93886 1.86141 1.81409 1.12083 1.28853 1.23658 1.00929 0.92001 1.03220 0.95417 0.95020 0.91303 0.92225 0.94187 0.92617 0.92393 0.91321 0.96089 0.94005 0.95881 0.91396 0.92875 0.91834 0.87949 0.90020 0.88955 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 7.81 71.98 0.56 -4.56 16 2 C -0.08 -3.07 2.59 -10.80 -0.03 -3.10 16 3 C -0.14 -4.39 9.17 71.98 0.66 -3.73 16 4 C -0.09 -3.81 3.78 30.60 0.12 -3.69 16 5 C 0.07 2.81 0.29 -53.03 -0.02 2.79 16 6 C -0.45 -21.36 2.25 25.60 0.06 -21.30 16 7 H 0.05 2.55 6.69 -2.91 -0.02 2.54 16 8 C 0.04 1.94 3.79 84.65 0.32 2.27 16 9 N -0.90 -46.47 9.45 21.45 0.20 -46.27 16 10 Si 0.91 41.97 29.54 68.60 2.03 44.00 16 11 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 12 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 13 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 14 C -0.10 -4.40 4.13 30.32 0.13 -4.27 16 15 C -0.10 -4.10 5.57 30.46 0.17 -3.93 16 16 C -0.06 -2.03 6.45 71.99 0.46 -1.57 16 17 S -0.31 -11.90 21.12 -56.49 -1.19 -13.09 16 18 C -0.05 -1.93 4.79 72.01 0.35 -1.59 16 19 H 0.03 1.22 7.41 -2.39 -0.02 1.20 16 20 H 0.03 1.11 8.07 -2.39 -0.02 1.09 16 21 H 0.07 3.02 5.16 -2.39 -0.01 3.01 16 22 H 0.06 2.11 5.84 -2.39 -0.01 2.09 16 23 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 26 H 0.07 3.34 5.97 -2.39 -0.01 3.32 16 27 H 0.02 0.82 8.13 -2.39 -0.02 0.81 16 28 H 0.25 12.87 8.31 -92.70 -0.77 12.10 16 29 H 0.02 0.90 8.08 -2.39 -0.02 0.89 16 30 H 0.07 3.29 6.26 -2.39 -0.01 3.28 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.06 2.91 6.29 -2.39 -0.02 2.90 16 33 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.09 3.53 5.99 -2.39 -0.01 3.51 16 36 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -49.88 271.21 4.85 -45.03 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 1.03 Total: 13.02 kcal Atomic # 6 Polarization: -45.46 SS G_CDS: 2.78 Total: -42.68 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.20 Total: -46.27 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 16 Polarization: -11.90 SS G_CDS: -1.19 Total: -13.09 kcal Total: -49.88 4.85 -45.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261150858.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.802 kcal (2) G-P(sol) polarization free energy of solvation -49.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds