Wall clock time and date at job start Mon Mar 30 2020 03:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46890 * 2 1 4 4 H 1.09007 * 109.47140 * 55.00217 * 3 2 1 5 5 C 1.53005 * 109.47287 * 295.00297 * 3 2 1 6 6 C 1.53002 * 109.47109 * 175.00008 * 3 2 1 7 7 C 1.50695 * 109.38580 * 60.20271 * 6 3 2 8 8 H 1.08002 * 120.00175 * 264.74049 * 7 6 3 9 9 C 1.37880 * 120.00429 * 84.75022 * 7 6 3 10 10 N 1.31515 * 119.99583 * 352.43006 * 9 7 6 11 11 Si 1.86797 * 120.00320 * 172.43510 * 9 7 6 12 12 H 1.48505 * 109.47081 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47474 * 119.99432 * 11 9 7 14 14 H 1.48501 * 109.47019 * 239.99716 * 11 9 7 15 15 C 1.52577 * 109.38836 * 180.02562 * 6 3 2 16 16 C 1.52591 * 110.72589 * 190.72706 * 15 6 3 17 17 C 1.53099 * 109.95469 * 289.32559 * 16 15 6 18 18 S 1.81754 * 108.83786 * 63.02287 * 17 16 15 19 19 C 1.53092 * 109.31059 * 300.44974 * 6 3 2 20 20 H 1.09001 * 109.47170 * 299.99342 * 1 2 3 21 21 H 1.09006 * 109.47365 * 59.99864 * 1 2 3 22 22 H 1.09002 * 109.47017 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46662 * 240.00744 * 2 1 3 24 24 H 1.08994 * 109.47129 * 120.00502 * 2 1 3 25 25 H 1.09003 * 109.46698 * 179.97438 * 5 3 2 26 26 H 1.08995 * 109.47097 * 299.99665 * 5 3 2 27 27 H 1.09000 * 109.47145 * 59.99837 * 5 3 2 28 28 H 0.96998 * 119.99746 * 180.02562 * 10 9 7 29 29 H 1.08999 * 109.23041 * 70.40712 * 15 6 3 30 30 H 1.09006 * 109.23174 * 311.04541 * 15 6 3 31 31 H 1.08994 * 109.39291 * 169.17845 * 16 15 6 32 32 H 1.09001 * 109.30725 * 49.42350 * 16 15 6 33 33 H 1.09004 * 109.57726 * 303.21909 * 17 16 15 34 34 H 1.08993 * 109.67949 * 182.89254 * 17 16 15 35 35 H 1.08997 * 109.57616 * 57.06576 * 19 6 3 36 36 H 1.09005 * 109.57387 * 296.68080 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 3.5648 1.4444 0.1257 7 6 4.1639 0.7031 -1.0415 8 1 4.4182 -0.3421 -0.9445 9 6 4.3876 1.3590 -2.2335 10 7 3.9442 2.5857 -2.4022 11 14 5.3202 0.5056 -3.6087 12 1 5.7092 -0.8589 -3.1704 13 1 4.4533 0.4114 -4.8107 14 1 6.5400 1.2858 -3.9380 15 6 4.0712 2.8836 0.1262 16 6 5.5900 2.9218 -0.0163 17 6 6.2483 2.4136 1.2691 18 16 5.7798 0.6756 1.5209 19 6 3.9662 0.7493 1.4294 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5137 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 1.9981 3.1544 -1.3070 26 1 2.0698 1.5877 -2.1491 27 1 0.5488 2.1252 -1.3969 28 1 4.1012 3.0470 -3.2409 29 1 3.7864 3.3642 1.0622 30 1 3.6191 3.4236 -0.7058 31 1 5.9101 3.9462 -0.2062 32 1 5.8897 2.2884 -0.8512 33 1 5.9065 3.0102 2.1150 34 1 7.3320 2.4908 1.1818 35 1 3.5586 -0.2615 1.4448 36 1 3.5800 1.3138 2.2781 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261162032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:38 Heat of formation + Delta-G solvation = -7.268287 kcal Electronic energy + Delta-G solvation = -15576.163054 eV Core-core repulsion = 13379.312880 eV Total energy + Delta-G solvation = -2196.850174 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.124 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.11392 -33.90278 -31.89114 -30.35488 -28.15137 -25.70767 -25.15775 -23.25272 -21.57497 -19.33226 -18.51837 -15.66940 -15.56669 -14.76115 -14.16348 -13.87092 -13.33766 -13.16940 -12.69859 -12.44282 -12.11925 -11.97752 -11.50809 -11.32334 -10.90859 -10.83022 -10.65652 -10.57993 -10.32296 -9.92189 -9.86385 -9.73259 -9.51942 -9.28983 -8.85999 -8.62049 -8.33303 -7.97607 -6.57557 -5.82959 -3.93694 2.87377 3.31015 3.41038 3.47658 3.58782 4.45995 5.28650 5.76758 5.82662 5.85121 5.96318 6.01118 6.11774 6.19053 6.30055 6.46696 6.51617 6.58997 6.65504 6.69532 6.78088 6.87529 6.95013 7.08559 7.26088 7.32659 7.47795 7.60828 7.65470 7.71624 7.94766 8.15056 8.30765 8.49964 9.01327 9.63829 11.04645 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.018636 B = 0.017041 C = 0.011640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.115276 B = 1642.658538 C = 2404.848901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.063 4.063 4 H 0.024 0.976 5 C -0.113 4.113 6 C 0.068 3.932 7 C -0.470 4.470 8 H 0.058 0.942 9 C 0.064 3.936 10 N -0.880 5.880 11 Si 0.880 3.120 12 H -0.274 1.274 13 H -0.289 1.289 14 H -0.286 1.286 15 C -0.112 4.112 16 C -0.101 4.101 17 C -0.071 4.071 18 S -0.290 6.290 19 C -0.056 4.056 20 H 0.041 0.959 21 H 0.052 0.948 22 H 0.038 0.962 23 H 0.070 0.930 24 H 0.044 0.956 25 H 0.059 0.941 26 H 0.080 0.920 27 H -0.001 1.001 28 H 0.254 0.746 29 H 0.000 1.000 30 H 0.127 0.873 31 H 0.035 0.965 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.705 -0.054 3.930 4.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.083 4.083 4 H 0.042 0.958 5 C -0.170 4.170 6 C 0.067 3.933 7 C -0.508 4.508 8 H 0.076 0.924 9 C -0.136 4.136 10 N -0.520 5.520 11 Si 0.709 3.291 12 H -0.198 1.198 13 H -0.215 1.215 14 H -0.213 1.213 15 C -0.149 4.149 16 C -0.139 4.139 17 C -0.220 4.220 18 S -0.063 6.063 19 C -0.204 4.204 20 H 0.060 0.940 21 H 0.072 0.928 22 H 0.057 0.943 23 H 0.088 0.912 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.098 0.902 27 H 0.018 0.982 28 H 0.065 0.935 29 H 0.018 0.982 30 H 0.145 0.855 31 H 0.054 0.946 32 H 0.115 0.885 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.999 -0.813 3.981 4.184 hybrid contribution -0.194 0.625 -0.840 1.065 sum -1.193 -0.189 3.141 3.365 Atomic orbital electron populations 1.21859 0.98124 0.99813 1.00985 1.21536 0.93151 0.98615 1.01482 1.21147 0.96835 0.93631 0.96711 0.95764 1.21895 0.94633 1.01925 0.98584 1.18405 0.91487 0.92983 0.90440 1.20926 1.38519 0.96478 0.94925 0.92398 1.24716 0.95882 0.95070 0.97888 1.70078 1.45644 1.11751 1.24574 0.86700 0.79974 0.80144 0.82291 1.19814 1.21519 1.21259 1.21739 0.94563 0.98622 1.00012 1.21594 0.97226 0.99124 0.95947 1.23364 1.02153 0.94498 1.01955 1.85965 1.10836 1.15078 1.94414 1.23706 0.91160 1.03747 1.01768 0.94031 0.92849 0.94282 0.91163 0.93752 0.92189 0.90164 0.98176 0.93548 0.98170 0.85506 0.94612 0.88504 0.92178 0.90206 0.89549 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.67 37.16 0.36 -2.11 16 2 C -0.11 -2.10 4.84 -26.73 -0.13 -2.23 16 3 C -0.06 -1.30 1.74 -90.62 -0.16 -1.46 16 4 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 5 C -0.11 -2.46 7.20 37.16 0.27 -2.19 16 6 C 0.07 1.50 0.28 -155.83 -0.04 1.46 16 7 C -0.47 -11.35 4.57 -34.44 -0.16 -11.51 16 8 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 9 C 0.06 1.55 2.47 -17.82 -0.04 1.51 16 10 N -0.88 -21.46 6.88 55.43 0.38 -21.08 16 11 Si 0.88 20.31 29.54 -169.99 -5.02 15.29 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 15 C -0.11 -2.50 3.78 -27.16 -0.10 -2.60 16 16 C -0.10 -2.18 5.12 -26.89 -0.14 -2.31 16 17 C -0.07 -1.39 6.46 37.21 0.24 -1.15 16 18 S -0.29 -6.06 21.44 -107.50 -2.30 -8.37 16 19 C -0.06 -1.15 4.97 37.21 0.18 -0.97 16 20 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.05 0.88 6.57 -51.93 -0.34 0.54 16 22 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 1.46 7.40 -51.93 -0.38 1.08 16 24 H 0.04 0.82 6.09 -51.93 -0.32 0.50 16 25 H 0.06 1.37 5.70 -51.93 -0.30 1.07 16 26 H 0.08 1.93 5.45 -51.93 -0.28 1.64 16 27 H 0.00 -0.01 6.56 -51.93 -0.34 -0.35 16 28 H 0.25 6.14 8.31 -40.82 -0.34 5.80 16 29 H 0.00 -0.01 8.08 -51.93 -0.42 -0.43 16 30 H 0.13 3.06 3.84 -51.93 -0.20 2.86 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 2.35 5.29 -51.93 -0.27 2.08 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.09 1.76 6.15 -51.93 -0.32 1.44 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 264.54 15.07 3.99 3.99 Total: -1.00 -23.74 264.54 -8.36 -32.10 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -5.68 Total: 1.64 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: 0.28 Total: -23.57 kcal Atomic # 7 Polarization: -21.46 SS G_CDS: 0.38 Total: -21.08 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: -6.06 SS G_CDS: -2.30 Total: -8.37 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -23.74 -8.36 -32.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261162032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.832 kcal (2) G-P(sol) polarization free energy of solvation -23.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds