Wall clock time and date at job start Mon Mar 30 2020 03:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99920 * 2 1 4 4 H 1.48497 * 109.47378 * 269.99718 * 3 2 1 5 5 H 1.48498 * 109.47222 * 30.00084 * 3 2 1 6 6 H 1.48506 * 109.46855 * 149.99975 * 3 2 1 7 7 C 1.37884 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99496 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99887 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.46851 * 180.02562 * 9 7 2 11 11 C 1.42904 * 114.00313 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47396 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.47254 * 64.99580 * 12 11 10 14 14 C 1.47477 * 111.00047 * 265.97286 * 13 12 11 15 15 C 1.53513 * 87.92932 * 221.29743 * 14 13 12 16 16 C 1.50708 * 114.17019 * 272.37426 * 15 14 13 17 17 N 1.34772 * 119.99880 * 273.84309 * 16 15 14 18 18 O 1.21276 * 119.99590 * 93.84031 * 16 15 14 19 19 C 1.47481 * 111.00017 * 169.99694 * 13 12 11 20 20 H 0.97003 * 120.00101 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47276 * 60.00900 * 9 7 2 22 22 H 1.08998 * 109.47660 * 300.00675 * 9 7 2 23 23 H 1.09001 * 109.46993 * 59.99365 * 11 10 9 24 24 H 1.09004 * 109.46505 * 300.00140 * 11 10 9 25 25 H 1.09002 * 109.47153 * 304.99576 * 12 11 10 26 26 H 1.09001 * 109.46832 * 184.99767 * 12 11 10 27 27 H 1.09000 * 113.47846 * 336.05901 * 14 13 12 28 28 H 1.08998 * 113.47506 * 106.53321 * 14 13 12 29 29 H 1.09003 * 114.17198 * 139.67330 * 15 14 13 30 30 H 0.96996 * 120.00494 * 0.02562 * 17 16 15 31 31 H 0.97007 * 119.99946 * 179.97438 * 17 16 15 32 32 H 1.09000 * 113.47744 * 253.47034 * 19 13 12 33 33 H 1.09000 * 113.47156 * 23.94180 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5650 -4.8755 -0.0011 12 6 2.6480 -5.9562 -0.0004 13 7 3.4072 -5.8879 1.2553 14 6 4.6149 -5.0563 1.0982 15 6 5.3734 -6.0986 1.9318 16 6 5.3090 -5.8646 3.4192 17 7 6.1994 -5.0443 4.0114 18 8 4.4560 -6.4144 4.0832 19 6 4.2973 -7.0550 1.3989 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6245 -2.5571 0.8896 23 1 0.9451 -4.9822 -0.8913 24 1 0.9446 -4.9827 0.8887 25 1 3.3221 -5.7956 -0.8418 26 1 2.1820 -6.9375 -0.0904 27 1 4.9636 -4.9873 0.0677 28 1 4.5386 -4.0836 1.5841 29 1 6.3793 -6.3128 1.5708 30 1 6.8814 -4.6042 3.4803 31 1 6.1578 -4.8933 4.9688 32 1 3.9519 -7.7761 2.1397 33 1 4.5612 -7.5193 0.4487 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382106281.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:14 Heat of formation + Delta-G solvation = -83.837791 kcal Electronic energy + Delta-G solvation = -15870.889858 eV Core-core repulsion = 13124.426166 eV Total energy + Delta-G solvation = -2746.463692 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.75529 -39.35893 -38.28258 -34.98582 -34.58029 -32.74518 -29.53854 -27.82044 -26.82296 -24.53794 -23.76242 -22.42761 -20.23455 -18.66327 -18.03943 -17.89656 -17.53394 -17.18215 -16.57306 -16.02724 -15.81619 -15.65849 -15.08227 -14.87494 -14.25865 -13.60276 -13.55871 -13.31967 -12.99489 -12.78075 -12.44064 -12.32176 -12.10810 -11.75925 -11.55066 -11.27432 -10.93809 -10.86494 -10.58976 -10.21833 -9.72875 -8.32466 -6.45393 1.39059 1.42784 1.54497 1.64642 2.34101 2.60049 3.01364 3.11124 3.22998 3.39266 3.81870 4.06893 4.18642 4.28095 4.46299 4.49818 4.56559 4.70429 4.72855 4.83968 4.89174 4.92625 5.04354 5.16602 5.46640 5.54391 5.95210 5.95611 6.12000 6.53211 6.54019 6.81348 7.26652 7.42688 8.80335 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.027878 B = 0.006192 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.136569 B = 4521.101539 C = 5167.602429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.210 3.790 10 O -0.398 6.398 11 C 0.059 3.941 12 C 0.033 3.967 13 N -0.499 5.499 14 C 0.031 3.969 15 C -0.138 4.138 16 C 0.534 3.466 17 N -0.838 5.838 18 O -0.585 6.585 19 C 0.021 3.979 20 H 0.270 0.730 21 H -0.015 1.015 22 H -0.026 1.026 23 H 0.048 0.952 24 H 0.027 0.973 25 H 0.065 0.935 26 H 0.107 0.893 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.152 0.848 30 H 0.418 0.582 31 H 0.406 0.594 32 H 0.080 0.920 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.802 -11.626 1.243 18.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.084 0.916 9 C 0.135 3.865 10 O -0.318 6.318 11 C -0.018 4.018 12 C -0.095 4.095 13 N -0.222 5.222 14 C -0.098 4.098 15 C -0.160 4.160 16 C 0.320 3.680 17 N -0.401 5.401 18 O -0.464 6.464 19 C -0.107 4.107 20 H 0.079 0.921 21 H 0.002 0.998 22 H -0.008 1.008 23 H 0.067 0.933 24 H 0.045 0.955 25 H 0.084 0.916 26 H 0.125 0.875 27 H 0.115 0.885 28 H 0.078 0.922 29 H 0.170 0.830 30 H 0.249 0.751 31 H 0.237 0.763 32 H 0.098 0.902 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 13.713 -11.762 1.988 18.176 hybrid contribution 0.099 0.964 -0.396 1.047 sum 13.812 -10.798 1.592 17.604 Atomic orbital electron populations 1.70091 1.07974 1.28647 1.50610 1.26040 0.95962 1.03630 0.93919 0.85144 0.78372 0.76724 0.78936 1.19022 1.20193 1.18546 1.21372 0.94150 0.90583 1.52076 0.91632 1.19773 0.88721 0.85073 0.92905 1.87774 1.34946 1.13958 1.95106 1.22524 0.96039 0.84366 0.98874 1.22694 0.96775 0.97894 0.92146 1.68991 1.14815 1.07000 1.31377 1.23678 0.89276 0.96963 0.99907 1.22651 1.02671 0.99410 0.91246 1.20260 0.79851 0.77910 0.90022 1.43668 1.34537 1.48697 1.13245 1.90710 1.37446 1.51472 1.66821 1.23737 0.91020 0.94249 1.01723 0.92095 0.99771 1.00800 0.93339 0.95466 0.91632 0.87509 0.88527 0.92185 0.83050 0.75117 0.76330 0.90172 0.87463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.99 44.52 29.54 68.60 2.03 46.54 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 6 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.54 -32.87 9.43 25.60 0.24 -32.63 16 8 H 0.07 3.85 7.81 -2.91 -0.02 3.82 16 9 C 0.21 12.30 5.69 71.24 0.41 12.71 16 10 O -0.40 -19.87 9.66 -148.98 -1.44 -21.31 16 11 C 0.06 2.36 6.28 71.98 0.45 2.81 16 12 C 0.03 0.99 5.28 86.30 0.46 1.44 16 13 N -0.50 -15.69 6.20 -927.86 -5.75 -21.43 16 14 C 0.03 0.86 6.65 83.58 0.56 1.41 16 15 C -0.14 -2.85 4.56 -11.19 -0.05 -2.90 16 16 C 0.53 13.93 7.55 87.66 0.66 14.59 16 17 N -0.84 -14.55 8.87 -173.53 -1.54 -16.09 16 18 O -0.58 -21.32 16.81 -3.02 -0.05 -21.37 16 19 C 0.02 0.49 7.01 83.58 0.59 1.07 16 20 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 21 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 22 H -0.03 -1.62 8.14 -2.39 -0.02 -1.64 16 23 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.07 1.74 7.30 -2.39 -0.02 1.72 16 26 H 0.11 2.54 8.08 -2.39 -0.02 2.52 16 27 H 0.10 2.30 7.42 -2.39 -0.02 2.29 16 28 H 0.06 2.04 8.11 -2.39 -0.02 2.02 16 29 H 0.15 1.69 8.14 -2.39 -0.02 1.68 16 30 H 0.42 4.36 8.83 -92.71 -0.82 3.55 16 31 H 0.41 6.49 8.93 -92.70 -0.83 5.66 16 32 H 0.08 2.08 7.51 -2.39 -0.02 2.06 16 33 H 0.11 1.68 7.91 -2.39 -0.02 1.66 16 Total: -1.00 -79.16 284.53 -3.23 -82.39 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -0.53 Total: 9.37 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 3.77 Total: -0.88 kcal Atomic # 7 Polarization: -87.75 SS G_CDS: -7.00 Total: -94.75 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -1.49 Total: -42.67 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -79.16 -3.23 -82.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382106281.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.447 kcal (2) G-P(sol) polarization free energy of solvation -79.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds