Wall clock time and date at job start Mon Mar 30 2020 03:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.46906 * 55.00224 * 11 10 9 13 13 N 1.46898 * 109.47092 * 295.00148 * 11 10 9 14 14 C 1.50699 * 109.47482 * 174.99860 * 11 10 9 15 15 O 1.21286 * 119.99857 * 100.00182 * 14 11 10 16 16 N 1.34781 * 120.00160 * 279.99980 * 14 11 10 17 17 C 1.47061 * 136.05652 * 359.63441 * 16 14 11 18 18 C 1.53757 * 87.89003 * 152.95839 * 17 16 14 19 19 O 1.42905 * 114.39431 * 272.67633 * 18 17 16 20 20 C 1.47066 * 136.05566 * 179.97438 * 16 14 11 21 21 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 25 25 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 26 26 H 1.00899 * 111.00057 * 299.99390 * 13 11 10 27 27 H 1.00898 * 110.99947 * 63.95776 * 13 11 10 28 28 H 1.09000 * 113.46612 * 267.68921 * 17 16 14 29 29 H 1.09006 * 113.47134 * 38.12654 * 17 16 14 30 30 H 1.09000 * 114.08799 * 139.77778 * 18 17 16 31 31 H 0.96692 * 113.99812 * 273.58510 * 19 18 17 32 32 H 1.09001 * 113.47085 * 321.87148 * 20 16 14 33 33 H 1.09000 * 113.46562 * 92.31304 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 1 5.9147 -2.0475 0.8418 13 7 6.0410 -2.0514 -1.2553 14 6 6.0536 -4.0522 0.1236 15 8 6.4277 -4.6513 -0.8624 16 7 6.0872 -4.6524 1.3300 17 6 5.7415 -4.2773 2.7093 18 6 5.4875 -5.7674 2.9905 19 8 4.1614 -6.2070 2.6899 20 6 6.4913 -5.9685 1.8470 21 1 -0.4850 0.8401 -0.0004 22 1 3.8751 -0.6798 -0.8895 23 1 3.8745 -0.6810 0.8905 24 1 3.6577 -3.1507 0.8897 25 1 3.6584 -3.1504 -0.8902 26 1 5.7175 -2.5803 -2.0514 27 1 5.7717 -1.0820 -1.3314 28 1 6.5807 -3.8666 3.2707 29 1 4.8448 -3.6616 2.7800 30 1 5.8451 -6.1037 3.9637 31 1 3.5314 -6.0790 3.4121 32 1 6.2332 -6.7937 1.1831 33 1 7.5282 -6.0040 2.1809 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691561217.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:24 Heat of formation + Delta-G solvation = -80.363508 kcal Electronic energy + Delta-G solvation = -16114.716500 eV Core-core repulsion = 13368.403465 eV Total energy + Delta-G solvation = -2746.313035 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.52255 -39.48419 -37.13701 -36.18325 -34.83923 -32.13477 -30.67610 -28.21257 -26.98949 -25.29088 -22.71707 -21.87150 -20.13741 -19.11469 -18.55920 -18.18677 -17.15398 -16.53505 -16.26086 -16.08171 -15.57911 -15.18253 -14.86539 -14.67996 -14.58237 -13.99661 -13.92984 -13.59366 -13.11214 -12.79650 -12.72226 -12.17456 -11.93638 -11.78012 -11.70052 -11.44939 -11.17058 -10.79814 -10.64422 -9.83728 -9.65471 -8.31764 -6.37992 1.37324 1.38434 1.50238 1.54664 1.78391 2.34691 3.01403 3.03378 3.40171 3.48270 3.66440 4.00867 4.11064 4.18475 4.37324 4.46702 4.50575 4.57295 4.63853 4.69693 4.87409 4.92029 4.97153 5.30512 5.40973 5.59313 5.99578 6.22837 6.42695 6.65308 6.69906 6.91037 7.09541 7.26761 8.85168 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.029858 B = 0.006973 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.531486 B = 4014.373559 C = 4538.079725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.237 1.237 7 C -0.538 4.538 8 H 0.024 0.976 9 C -0.002 4.002 10 C -0.113 4.113 11 C 0.090 3.910 12 H 0.115 0.885 13 N -0.830 5.830 14 C 0.545 3.455 15 O -0.584 6.584 16 N -0.652 5.652 17 C 0.060 3.940 18 C 0.080 3.920 19 O -0.574 6.574 20 C 0.096 3.904 21 H 0.267 0.733 22 H 0.023 0.977 23 H 0.033 0.967 24 H 0.058 0.942 25 H 0.035 0.965 26 H 0.345 0.655 27 H 0.356 0.644 28 H 0.132 0.868 29 H 0.078 0.922 30 H 0.144 0.856 31 H 0.403 0.597 32 H 0.058 0.942 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.526 -7.103 10.992 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.777 3.223 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.160 1.160 7 C -0.575 4.575 8 H 0.042 0.958 9 C -0.039 4.039 10 C -0.153 4.153 11 C -0.025 4.025 12 H 0.133 0.867 13 N -0.362 5.362 14 C 0.335 3.665 15 O -0.464 6.464 16 N -0.387 5.387 17 C -0.062 4.062 18 C 0.021 3.979 19 O -0.383 6.383 20 C -0.026 4.026 21 H 0.076 0.924 22 H 0.041 0.959 23 H 0.051 0.949 24 H 0.077 0.923 25 H 0.054 0.946 26 H 0.158 0.842 27 H 0.172 0.828 28 H 0.149 0.851 29 H 0.096 0.904 30 H 0.161 0.839 31 H 0.255 0.745 32 H 0.077 0.923 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 15.576 -7.519 9.984 19.971 hybrid contribution -1.768 0.861 -0.160 1.973 sum 13.808 -6.658 9.824 18.207 Atomic orbital electron populations 1.70082 1.08539 1.28325 1.52239 1.26083 0.95648 1.03767 0.93788 0.85593 0.79756 0.77615 0.79288 1.19311 1.21053 1.15979 1.21406 0.92078 0.92935 1.51122 0.95800 1.19473 0.93947 0.93329 0.97199 1.21956 0.93442 0.98869 1.01058 1.21308 0.93323 0.91839 0.96053 0.86684 1.58743 1.66517 1.07687 1.03235 1.20425 0.76577 0.88188 0.81287 1.90612 1.50875 1.67035 1.37832 1.49640 1.64364 1.18133 1.06582 1.24258 1.02764 0.99659 0.79558 1.23224 0.83564 0.92397 0.98750 1.86498 1.20153 1.84926 1.46683 1.23439 1.00239 0.85275 0.93668 0.92414 0.95852 0.94892 0.92292 0.94634 0.84239 0.82834 0.85064 0.90382 0.83853 0.74520 0.92347 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 2 C 0.00 0.23 5.47 84.66 0.46 0.69 16 3 Si 0.96 42.73 27.47 68.60 1.88 44.61 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.24 -9.44 6.54 99.48 0.65 -8.79 16 7 C -0.54 -30.84 9.66 25.60 0.25 -30.60 16 8 H 0.02 1.54 7.99 -2.91 -0.02 1.51 16 9 C 0.00 -0.09 3.81 29.85 0.11 0.02 16 10 C -0.11 -4.55 4.78 30.59 0.15 -4.40 16 11 C 0.09 3.04 3.03 44.17 0.13 3.17 16 12 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 13 N -0.83 -27.66 8.94 -171.81 -1.54 -29.20 16 14 C 0.55 19.53 7.33 87.66 0.64 20.17 16 15 O -0.58 -25.30 17.03 -3.05 -0.05 -25.35 16 16 N -0.65 -17.73 3.69 -858.36 -3.16 -20.90 16 17 C 0.06 1.02 8.28 83.27 0.69 1.71 16 18 C 0.08 1.15 5.58 31.01 0.17 1.32 16 19 O -0.57 -11.84 13.72 -148.98 -2.04 -13.89 16 20 C 0.10 1.90 8.45 83.17 0.70 2.61 16 21 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 22 H 0.02 1.00 6.29 -2.39 -0.02 0.98 16 23 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 24 H 0.06 2.38 7.73 -2.39 -0.02 2.36 16 25 H 0.03 1.57 8.14 -2.39 -0.02 1.56 16 26 H 0.34 12.13 8.58 -89.69 -0.77 11.36 16 27 H 0.36 10.90 7.55 -89.70 -0.68 10.22 16 28 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.56 7.73 -2.38 -0.02 1.54 16 30 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.40 4.57 9.12 -74.06 -0.68 3.90 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -80.54 281.29 -2.34 -82.88 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: -1.04 Total: 26.33 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 3.31 Total: -5.29 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -4.40 Total: -109.28 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -2.10 Total: -39.24 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.88 Total: 44.61 kcal Total: -80.54 -2.34 -82.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691561217.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.515 kcal (2) G-P(sol) polarization free energy of solvation -80.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds