Wall clock time and date at job start Mon Mar 30 2020 03:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00097 * 2 1 4 4 H 1.48498 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46882 * 300.00466 * 3 2 1 6 6 H 1.48502 * 109.46799 * 60.00283 * 3 2 1 7 7 C 1.37883 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99678 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99800 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.46797 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99664 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00257 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99751 * 179.97438 * 11 10 9 14 14 H 1.08997 * 110.80975 * 297.83046 * 13 11 10 15 15 C 1.55005 * 110.90371 * 61.45618 * 13 11 10 16 16 O 1.44381 * 103.48852 * 155.22075 * 15 13 11 17 17 C 1.43750 * 106.97547 * 319.94135 * 16 15 13 18 18 H 1.09000 * 109.87333 * 266.94106 * 17 16 15 19 19 C 1.52997 * 109.87902 * 145.93964 * 17 16 15 20 20 N 1.46899 * 109.47254 * 66.45049 * 19 17 16 21 21 C 1.54096 * 107.29369 * 26.51341 * 17 16 15 22 22 H 0.97000 * 119.99952 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47031 * 60.00664 * 9 7 2 24 24 H 1.08996 * 109.47818 * 300.00424 * 9 7 2 25 25 H 0.96992 * 119.99873 * 0.02562 * 10 9 7 26 26 H 1.08995 * 110.61605 * 36.72195 * 15 13 11 27 27 H 1.08996 * 110.61846 * 273.71930 * 15 13 11 28 28 H 1.09002 * 109.47153 * 306.45045 * 19 17 16 29 29 H 1.09001 * 109.46832 * 186.45236 * 19 17 16 30 30 H 1.00900 * 111.00464 * 179.97438 * 20 19 17 31 31 H 1.00902 * 111.00582 * 303.95797 * 20 19 17 32 32 H 1.08998 * 110.48914 * 116.65057 * 21 17 16 33 33 H 1.09009 * 110.48666 * 239.29630 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5614 -5.1050 -0.0020 13 6 2.7331 -6.0288 -0.0016 14 1 3.3462 -6.0136 -0.9027 15 6 3.6185 -6.0001 1.2703 16 8 4.0266 -7.3761 1.4277 17 6 2.8850 -8.1910 1.1130 18 1 2.3308 -8.4197 2.0233 19 6 3.3409 -9.4882 0.4420 20 7 4.0989 -10.2978 1.4053 21 6 1.9987 -7.3837 0.1450 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 3.1567 -3.4354 -0.0002 26 1 3.0401 -5.6703 2.1332 27 1 4.4858 -5.3574 1.1198 28 1 3.9752 -9.2518 -0.4125 29 1 2.4691 -10.0480 0.1034 30 1 4.4111 -11.1608 0.9860 31 1 4.8763 -9.7769 1.7828 32 1 1.9303 -7.8869 -0.8195 33 1 1.0060 -7.2355 0.5702 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713837564.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:02 Heat of formation + Delta-G solvation = -97.518228 kcal Electronic energy + Delta-G solvation = -15761.622866 eV Core-core repulsion = 13014.565946 eV Total energy + Delta-G solvation = -2747.056920 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.10432 -38.20575 -34.60766 -34.28653 -32.49343 -32.03016 -29.55968 -27.19006 -24.50965 -23.59516 -21.93324 -21.04071 -19.55216 -17.60456 -16.41569 -16.14285 -16.00321 -15.33658 -15.02156 -14.86114 -14.44065 -14.22403 -13.70572 -13.22254 -12.92352 -12.44971 -12.04972 -11.98238 -11.76894 -11.26878 -11.17865 -10.94168 -10.91725 -10.74321 -10.34304 -9.76636 -9.42328 -9.12973 -8.89916 -8.78645 -7.96451 -6.20493 -4.27716 3.21091 3.22566 3.28426 3.31360 3.65801 4.09299 4.31554 4.36257 4.45364 4.85688 4.94313 5.07447 5.12819 5.15960 5.31441 5.46572 5.53002 5.70046 5.72448 5.87576 6.02362 6.13495 6.78236 6.92395 7.24585 7.24674 7.35141 7.45985 7.61351 7.92252 8.54375 8.72152 9.00568 9.39064 10.89736 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.065298 B = 0.004793 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.698292 B = 5839.895621 C = 6149.507351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.709 5.709 11 C 0.507 3.493 12 O -0.552 6.552 13 C -0.146 4.146 14 H 0.106 0.894 15 C 0.062 3.938 16 O -0.375 6.375 17 C 0.076 3.924 18 H 0.078 0.922 19 C 0.065 3.935 20 N -0.851 5.851 21 C -0.135 4.135 22 H 0.266 0.734 23 H 0.027 0.973 24 H 0.028 0.972 25 H 0.391 0.609 26 H 0.068 0.932 27 H 0.100 0.900 28 H 0.034 0.966 29 H 0.083 0.917 30 H 0.339 0.661 31 H 0.348 0.652 32 H 0.079 0.921 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.973 -14.547 0.349 17.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.082 0.918 9 C 0.127 3.873 10 N -0.357 5.357 11 C 0.291 3.709 12 O -0.431 6.431 13 C -0.168 4.168 14 H 0.124 0.876 15 C -0.015 4.015 16 O -0.295 6.295 17 C 0.018 3.982 18 H 0.096 0.904 19 C -0.066 4.066 20 N -0.381 5.381 21 C -0.173 4.173 22 H 0.075 0.925 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.223 0.777 26 H 0.087 0.913 27 H 0.118 0.882 28 H 0.052 0.948 29 H 0.101 0.899 30 H 0.151 0.849 31 H 0.161 0.839 32 H 0.098 0.902 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.463 -14.634 0.830 16.448 hybrid contribution 1.439 1.299 -0.839 2.112 sum 8.901 -13.335 -0.009 16.033 Atomic orbital electron populations 1.69984 1.06129 1.27260 1.48874 1.24961 0.94920 0.99507 0.94634 0.86352 0.79829 0.82898 0.77786 1.19607 1.20782 1.20752 1.21255 0.93309 0.90400 1.53264 0.91803 1.19147 0.88322 0.81978 0.97827 1.46483 1.11188 1.06074 1.71926 1.20060 0.89068 0.84155 0.77617 1.90654 1.16749 1.84696 1.51010 1.22894 0.97766 0.95088 1.01046 0.87618 1.23492 0.98427 0.83968 0.95647 1.88805 1.34274 1.16264 1.90111 1.22877 0.86974 0.90562 0.97813 0.90409 1.21997 0.98435 0.92949 0.93255 1.58701 1.31661 1.08817 1.38881 1.22866 1.00686 0.93229 1.00520 0.92455 0.95463 0.95435 0.77650 0.91336 0.88228 0.94781 0.89914 0.84931 0.83914 0.90203 0.88398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.54 -14.56 9.28 -34.44 -0.32 -14.88 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.48 5.43 -5.19 -0.03 6.45 16 10 N -0.71 -14.51 5.50 -61.47 -0.34 -14.85 16 11 C 0.51 9.82 7.17 -10.98 -0.08 9.74 16 12 O -0.55 -12.96 15.51 5.56 0.09 -12.88 16 13 C -0.15 -2.06 3.52 -89.76 -0.32 -2.38 16 14 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 15 C 0.06 0.80 7.12 38.22 0.27 1.07 16 16 O -0.38 -4.89 10.78 -35.23 -0.38 -5.27 16 17 C 0.08 0.91 3.66 -26.16 -0.10 0.81 16 18 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 19 C 0.06 0.64 6.27 -3.83 -0.02 0.62 16 20 N -0.85 -8.00 9.62 -10.37 -0.10 -8.10 16 21 C -0.13 -1.76 6.02 -25.21 -0.15 -1.91 16 22 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.39 6.80 8.32 -40.82 -0.34 6.46 16 26 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 27 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.34 2.43 9.08 -39.29 -0.36 2.08 16 31 H 0.35 3.31 8.62 -39.29 -0.34 2.97 16 32 H 0.08 0.92 7.70 -51.93 -0.40 0.52 16 33 H 0.10 1.48 6.94 -51.92 -0.36 1.12 16 LS Contribution 281.08 15.07 4.24 4.24 Total: -1.00 -31.59 281.08 -6.32 -37.91 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -4.71 Total: 7.31 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -0.84 Total: 1.16 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.30 Total: -48.09 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.29 Total: -18.14 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.59 -6.32 -37.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713837564.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.609 kcal (2) G-P(sol) polarization free energy of solvation -31.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds