Wall clock time and date at job start Mon Mar 30 2020 03:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00097 * 2 1 4 4 H 1.48498 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46882 * 300.00466 * 3 2 1 6 6 H 1.48502 * 109.46799 * 60.00283 * 3 2 1 7 7 C 1.37883 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99678 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99800 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.46797 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99664 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00257 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99751 * 179.97438 * 11 10 9 14 14 H 1.08997 * 110.80975 * 297.83046 * 13 11 10 15 15 C 1.55005 * 110.90371 * 61.45618 * 13 11 10 16 16 O 1.44381 * 103.48852 * 155.22075 * 15 13 11 17 17 C 1.43750 * 106.97547 * 319.94135 * 16 15 13 18 18 H 1.09000 * 109.87333 * 266.94106 * 17 16 15 19 19 C 1.52997 * 109.87902 * 145.93964 * 17 16 15 20 20 N 1.46899 * 109.47254 * 66.45049 * 19 17 16 21 21 C 1.54096 * 107.29369 * 26.51341 * 17 16 15 22 22 H 0.97000 * 119.99952 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47031 * 60.00664 * 9 7 2 24 24 H 1.08996 * 109.47818 * 300.00424 * 9 7 2 25 25 H 0.96992 * 119.99873 * 0.02562 * 10 9 7 26 26 H 1.08995 * 110.61605 * 36.72195 * 15 13 11 27 27 H 1.08996 * 110.61846 * 273.71930 * 15 13 11 28 28 H 1.09002 * 109.47153 * 306.45045 * 19 17 16 29 29 H 1.09001 * 109.46832 * 186.45236 * 19 17 16 30 30 H 1.00900 * 111.00464 * 179.97438 * 20 19 17 31 31 H 1.00902 * 111.00582 * 303.95797 * 20 19 17 32 32 H 1.08998 * 110.48914 * 116.65057 * 21 17 16 33 33 H 1.09009 * 110.48666 * 239.29630 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5614 -5.1050 -0.0020 13 6 2.7331 -6.0288 -0.0016 14 1 3.3462 -6.0136 -0.9027 15 6 3.6185 -6.0001 1.2703 16 8 4.0266 -7.3761 1.4277 17 6 2.8850 -8.1910 1.1130 18 1 2.3308 -8.4197 2.0233 19 6 3.3409 -9.4882 0.4420 20 7 4.0989 -10.2978 1.4053 21 6 1.9987 -7.3837 0.1450 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 3.1567 -3.4354 -0.0002 26 1 3.0401 -5.6703 2.1332 27 1 4.4858 -5.3574 1.1198 28 1 3.9752 -9.2518 -0.4125 29 1 2.4691 -10.0480 0.1034 30 1 4.4111 -11.1608 0.9860 31 1 4.8763 -9.7769 1.7828 32 1 1.9303 -7.8869 -0.8195 33 1 1.0060 -7.2355 0.5702 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713837564.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:02 Heat of formation + Delta-G solvation = -123.978056 kcal Electronic energy + Delta-G solvation = -15762.770250 eV Core-core repulsion = 13014.565946 eV Total energy + Delta-G solvation = -2748.204304 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.38070 -39.64230 -36.21201 -35.41892 -34.40044 -33.28789 -30.66290 -29.08123 -25.42774 -25.31905 -23.48353 -22.07295 -21.13324 -19.17722 -17.94186 -17.41856 -17.02637 -16.93850 -16.43950 -16.04721 -15.89935 -15.62087 -14.88974 -14.71146 -14.13139 -13.98368 -13.81130 -13.43398 -13.01649 -12.90826 -12.76213 -12.28897 -12.21194 -12.11324 -11.83247 -11.46154 -10.83131 -10.81625 -10.77074 -9.88534 -9.60941 -8.30349 -6.46897 1.43659 1.44361 1.57940 1.64745 2.26530 2.45715 2.87783 3.05026 3.33961 3.51827 3.85743 3.87082 4.02475 4.16466 4.31498 4.38471 4.59960 4.68220 4.78580 4.88183 5.00123 5.08652 5.10458 5.21864 5.45992 5.65331 5.79080 5.83096 6.21906 6.61670 6.63953 6.83742 7.21863 7.41944 8.82068 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.065298 B = 0.004793 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.698292 B = 5839.895621 C = 6149.507351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.555 4.555 8 H 0.086 0.914 9 C 0.264 3.736 10 N -0.702 5.702 11 C 0.506 3.494 12 O -0.598 6.598 13 C -0.134 4.134 14 H 0.136 0.864 15 C 0.064 3.936 16 O -0.376 6.376 17 C 0.078 3.922 18 H 0.067 0.933 19 C 0.069 3.931 20 N -0.858 5.858 21 C -0.133 4.133 22 H 0.269 0.731 23 H -0.011 1.011 24 H -0.012 1.012 25 H 0.409 0.591 26 H 0.053 0.947 27 H 0.126 0.874 28 H 0.043 0.957 29 H 0.093 0.907 30 H 0.352 0.648 31 H 0.348 0.652 32 H 0.100 0.900 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.661 -14.837 -0.023 18.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.593 4.593 8 H 0.104 0.896 9 C 0.141 3.859 10 N -0.352 5.352 11 C 0.293 3.707 12 O -0.480 6.480 13 C -0.155 4.155 14 H 0.154 0.846 15 C -0.013 4.013 16 O -0.295 6.295 17 C 0.020 3.980 18 H 0.085 0.915 19 C -0.062 4.062 20 N -0.389 5.389 21 C -0.172 4.172 22 H 0.077 0.923 23 H 0.007 0.993 24 H 0.006 0.994 25 H 0.245 0.755 26 H 0.072 0.928 27 H 0.144 0.856 28 H 0.061 0.939 29 H 0.111 0.889 30 H 0.166 0.834 31 H 0.160 0.840 32 H 0.118 0.882 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.205 -14.967 0.458 18.121 hybrid contribution 0.543 1.309 -0.705 1.583 sum 10.748 -13.658 -0.248 17.382 Atomic orbital electron populations 1.70143 1.08298 1.28522 1.50040 1.26067 0.95759 1.03930 0.93853 0.85110 0.79150 0.77320 0.77631 1.17525 1.20526 1.20532 1.21650 0.94374 0.90482 1.52776 0.89649 1.18588 0.88741 0.84364 0.94211 1.46201 1.11281 1.05411 1.72268 1.20982 0.89397 0.84765 0.75595 1.90637 1.19332 1.85386 1.52633 1.22880 0.96783 0.92689 1.03163 0.84588 1.23522 0.98976 0.84557 0.94205 1.88818 1.34377 1.16128 1.90146 1.22869 0.86554 0.91308 0.97223 0.91520 1.21955 0.99109 0.91924 0.93243 1.58677 1.31812 1.09397 1.39063 1.22857 0.99476 0.93119 1.01730 0.92251 0.99331 0.99371 0.75464 0.92840 0.85577 0.93891 0.88889 0.83421 0.83967 0.88192 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.80 13.29 21.45 0.28 -55.51 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.98 41.78 29.54 68.60 2.03 43.81 16 4 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.56 -29.69 9.28 25.60 0.24 -29.45 16 8 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 9 C 0.26 14.28 5.43 85.63 0.46 14.74 16 10 N -0.70 -28.75 5.50 -466.78 -2.57 -31.32 16 11 C 0.51 19.66 7.17 87.66 0.63 20.29 16 12 O -0.60 -29.14 15.51 -3.02 -0.05 -29.19 16 13 C -0.13 -3.53 3.52 -10.24 -0.04 -3.57 16 14 H 0.14 2.87 8.14 -2.39 -0.02 2.85 16 15 C 0.06 1.52 7.12 72.67 0.52 2.04 16 16 O -0.38 -8.87 10.78 -148.98 -1.61 -10.48 16 17 C 0.08 1.75 3.66 30.96 0.11 1.86 16 18 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 19 C 0.07 1.19 6.27 86.30 0.54 1.73 16 20 N -0.86 -14.19 9.62 -186.72 -1.80 -15.98 16 21 C -0.13 -3.33 6.02 31.58 0.19 -3.14 16 22 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 23 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 24 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 25 H 0.41 13.58 8.32 -92.71 -0.77 12.81 16 26 H 0.05 1.43 8.04 -2.39 -0.02 1.41 16 27 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.35 4.20 9.08 -89.69 -0.81 3.39 16 31 H 0.35 5.84 8.62 -89.69 -0.77 5.06 16 32 H 0.10 2.08 7.70 -2.39 -0.02 2.06 16 33 H 0.07 2.20 6.94 -2.38 -0.02 2.19 16 Total: -1.00 -70.15 281.08 -1.81 -71.96 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -1.22 Total: 21.55 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 3.12 Total: 5.17 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -4.08 Total: -102.82 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -1.65 Total: -39.67 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -70.15 -1.81 -71.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713837564.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.018 kcal (2) G-P(sol) polarization free energy of solvation -70.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds