Wall clock time and date at job start Mon Mar 30 2020 04:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 115.55198 * 2 1 4 4 C 1.53000 * 117.51550 * 214.29944 * 2 1 3 5 5 C 1.53000 * 60.00130 * 252.52027 * 4 2 1 6 6 C 1.52992 * 117.49907 * 107.49044 * 5 4 2 7 7 C 1.52994 * 117.51276 * 252.52009 * 5 4 2 8 8 O 1.42895 * 109.47242 * 248.62465 * 7 5 4 9 9 Si 1.63100 * 114.00174 * 108.10025 * 8 7 5 10 10 C 1.86302 * 109.47180 * 54.47347 * 9 8 7 11 11 C 1.86297 * 109.47599 * 174.47671 * 9 8 7 12 12 C 1.86301 * 109.46880 * 294.47664 * 9 8 7 13 13 C 1.50706 * 109.46980 * 128.63069 * 7 5 4 14 14 N 1.27939 * 120.00091 * 14.34724 * 13 7 5 15 15 Si 1.86795 * 120.00225 * 194.35266 * 13 7 5 16 16 H 1.48510 * 109.47257 * 86.52649 * 15 13 7 17 17 H 1.48498 * 109.47604 * 206.52925 * 15 13 7 18 18 H 1.48504 * 109.47144 * 326.52921 * 15 13 7 19 19 H 1.09004 * 109.46512 * 274.41955 * 1 2 3 20 20 H 1.08999 * 109.46465 * 34.41413 * 1 2 3 21 21 H 1.08994 * 109.46859 * 154.41585 * 1 2 3 22 22 H 1.09002 * 117.49821 * 0.02562 * 4 2 1 23 23 H 1.08996 * 117.50038 * 145.02493 * 4 2 1 24 24 H 1.09000 * 109.47331 * 351.37778 * 6 5 4 25 25 H 1.08995 * 109.47214 * 111.38056 * 6 5 4 26 26 H 1.09000 * 109.46928 * 231.37997 * 6 5 4 27 27 H 1.09002 * 109.47951 * 8.62869 * 7 5 4 28 28 H 1.09003 * 109.46911 * 66.68326 * 10 9 8 29 29 H 1.08999 * 109.47190 * 186.68103 * 10 9 8 30 30 H 1.08998 * 109.46964 * 306.68283 * 10 9 8 31 31 H 1.09007 * 109.46852 * 59.99584 * 11 9 8 32 32 H 1.08995 * 109.47230 * 179.97438 * 11 9 8 33 33 H 1.09006 * 109.47008 * 300.00311 * 11 9 8 34 34 H 1.09000 * 109.47146 * 59.99723 * 12 9 8 35 35 H 1.09003 * 109.47411 * 179.97438 * 12 9 8 36 36 H 1.08995 * 109.47374 * 299.99999 * 12 9 8 37 37 H 0.97006 * 119.99719 * 0.02562 * 14 13 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2369 -1.1210 -0.7647 5 6 2.2365 -1.1208 0.7653 6 6 1.3589 -2.1560 1.4716 7 6 3.5485 -0.7753 1.4724 8 8 4.0569 -1.9387 2.1282 9 14 5.3766 -2.5788 1.4151 10 6 6.6883 -1.2669 1.2444 11 6 6.0294 -3.9776 2.4582 12 6 4.9196 -3.2233 -0.2721 13 6 3.3002 0.3073 2.4910 14 7 2.1037 0.5914 2.8439 15 14 4.7393 1.2346 3.2382 16 1 5.0969 2.3810 2.3645 17 1 4.3600 1.7368 4.5833 18 1 5.9054 0.3232 3.3609 19 1 -0.3632 0.0792 1.0247 20 1 -0.3632 0.8478 -0.5808 21 1 -0.3633 -0.9269 -0.4438 22 1 1.6119 -1.8585 -1.2683 23 1 3.1720 -0.8751 -1.2678 24 1 0.7298 -2.6603 0.7380 25 1 1.9922 -2.8885 1.9719 26 1 0.7293 -1.6567 2.2081 27 1 4.2751 -0.4247 0.7394 28 1 7.0404 -0.9744 2.2336 29 1 7.5224 -1.6604 0.6635 30 1 6.2694 -0.3983 0.7362 31 1 5.2619 -4.7452 2.5580 32 1 6.9111 -4.4057 1.9813 33 1 6.2967 -3.6005 3.4454 34 1 4.5377 -2.4049 -0.8825 35 1 5.8017 -3.6508 -0.7490 36 1 4.1522 -3.9908 -0.1723 37 1 1.3563 0.1096 2.4561 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714706487.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:44 Heat of formation + Delta-G solvation = -37.621023 kcal Electronic energy + Delta-G solvation = -15472.517951 eV Core-core repulsion = 13181.149421 eV Total energy + Delta-G solvation = -2291.368531 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.90533 -37.33215 -35.61468 -30.48053 -29.59112 -29.19769 -28.52235 -28.29666 -27.27042 -22.80043 -21.68194 -19.65042 -18.07359 -17.50933 -16.99515 -15.90761 -14.98657 -14.62639 -14.36923 -14.22541 -14.08109 -13.79761 -13.72185 -13.43106 -13.35872 -13.24560 -13.14541 -13.05771 -12.90353 -12.77442 -12.72240 -12.33380 -12.13967 -11.88811 -11.54022 -11.38194 -11.00156 -10.70972 -10.65116 -10.42931 -9.83933 0.74081 1.21938 1.53913 1.59705 1.91814 1.93619 2.00597 2.13666 2.54895 2.61208 3.54915 3.66437 3.74657 3.88417 4.06097 4.16805 4.34150 4.66243 4.75100 4.76165 4.78399 4.79312 4.81858 4.84115 4.86431 4.89434 4.90719 4.92205 4.96664 5.08560 5.16675 5.27236 5.32466 5.45092 5.57778 5.66259 5.67236 6.91092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.152 4.152 3 H 0.105 0.895 4 C -0.155 4.155 5 C -0.163 4.163 6 C -0.113 4.113 7 C 0.124 3.876 8 O -0.618 6.618 9 Si 1.274 2.726 10 C -0.525 4.525 11 C -0.479 4.479 12 C -0.510 4.510 13 C -0.035 4.035 14 N -0.633 5.633 15 Si 1.050 2.950 16 H -0.237 1.237 17 H -0.266 1.266 18 H -0.218 1.218 19 H 0.056 0.944 20 H 0.066 0.934 21 H 0.062 0.938 22 H 0.103 0.897 23 H 0.109 0.891 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.021 -0.351 -2.667 3.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.170 4.170 3 H 0.123 0.877 4 C -0.192 4.192 5 C -0.163 4.163 6 C -0.170 4.170 7 C 0.065 3.935 8 O -0.575 6.575 9 Si 1.410 2.590 10 C -0.627 4.627 11 C -0.584 4.584 12 C -0.612 4.612 13 C -0.280 4.280 14 N -0.251 5.251 15 Si 0.863 3.137 16 H -0.161 1.161 17 H -0.190 1.190 18 H -0.140 1.140 19 H 0.075 0.925 20 H 0.085 0.915 21 H 0.081 0.919 22 H 0.121 0.879 23 H 0.127 0.873 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.114 0.886 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.039 0.714 -1.466 2.611 hybrid contribution -0.513 -1.343 -1.200 1.873 sum 1.526 -0.629 -2.666 3.135 Atomic orbital electron populations 1.21368 0.92138 1.02619 1.01909 1.22576 0.96071 0.94360 1.04007 0.87721 1.23443 1.03079 1.00817 0.91860 1.22012 0.98025 1.01652 0.94657 1.21262 0.98181 0.97725 0.99838 1.21375 0.94394 0.84603 0.93168 1.85417 1.62755 1.43626 1.65685 0.76923 0.55897 0.64328 0.61871 1.27196 1.15453 1.14507 1.05540 1.26449 1.06965 1.14608 1.10415 1.27060 1.05522 1.07216 1.21362 1.32148 1.03786 0.96753 0.95338 1.69339 1.03066 1.29064 1.23606 0.83919 0.72425 0.78345 0.79058 1.16060 1.19028 1.13955 0.92516 0.91498 0.91891 0.87912 0.87294 0.91782 0.90914 0.93191 0.88612 0.90490 0.89785 0.90467 0.91362 0.89893 0.91021 0.90823 0.90729 0.91681 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.16 9.17 71.98 0.66 0.82 16 2 C -0.15 0.15 4.67 -10.79 -0.05 0.10 16 3 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 4 C -0.16 0.41 8.72 30.59 0.27 0.68 16 5 C -0.16 0.06 1.23 -52.19 -0.06 -0.01 16 6 C -0.11 -0.10 8.53 71.98 0.61 0.52 16 7 C 0.12 -0.03 1.56 29.85 0.05 0.01 16 8 O -0.62 -0.13 6.65 -148.98 -0.99 -1.12 16 9 Si 1.27 -4.72 12.89 68.60 0.88 -3.84 16 10 C -0.52 2.18 8.14 113.37 0.92 3.10 16 11 C -0.48 0.80 8.65 113.37 0.98 1.78 16 12 C -0.51 1.54 8.65 113.37 0.98 2.52 16 13 C -0.03 -0.08 5.07 88.68 0.45 0.37 16 14 N -0.63 -3.57 13.05 24.11 0.31 -3.25 16 15 Si 1.05 0.03 29.68 68.60 2.04 2.07 16 16 H -0.24 0.32 7.11 99.48 0.71 1.02 16 17 H -0.27 -1.04 7.11 99.48 0.71 -0.33 16 18 H -0.22 0.67 5.68 99.48 0.57 1.23 16 19 H 0.06 -0.02 7.47 -2.38 -0.02 -0.04 16 20 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 21 H 0.06 -0.12 7.77 -2.39 -0.02 -0.14 16 22 H 0.10 -0.31 7.96 -2.39 -0.02 -0.33 16 23 H 0.11 -0.55 7.17 -2.39 -0.02 -0.57 16 24 H 0.06 -0.04 7.77 -2.39 -0.02 -0.06 16 25 H 0.07 0.16 6.89 -2.39 -0.02 0.14 16 26 H 0.05 0.10 6.67 -2.39 -0.02 0.08 16 27 H 0.10 -0.49 5.37 -2.39 -0.01 -0.51 16 28 H 0.08 -0.26 6.78 -2.39 -0.02 -0.28 16 29 H 0.08 -0.44 7.96 -2.39 -0.02 -0.46 16 30 H 0.08 -0.46 6.91 -2.39 -0.02 -0.48 16 31 H 0.07 -0.05 7.96 -2.38 -0.02 -0.06 16 32 H 0.08 -0.26 7.96 -2.39 -0.02 -0.28 16 33 H 0.07 -0.08 7.96 -2.38 -0.02 -0.10 16 34 H 0.07 -0.29 6.22 -2.39 -0.01 -0.30 16 35 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 36 H 0.06 -0.09 7.96 -2.39 -0.02 -0.11 16 37 H 0.33 1.47 4.18 -92.70 -0.39 1.09 16 Total: 0.00 -5.56 291.78 8.31 2.74 By element: Atomic # 1 Polarization: -2.28 SS G_CDS: 1.26 Total: -1.02 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 4.81 Total: 9.91 kcal Atomic # 7 Polarization: -3.57 SS G_CDS: 0.31 Total: -3.25 kcal Atomic # 8 Polarization: -0.13 SS G_CDS: -0.99 Total: -1.12 kcal Atomic # 14 Polarization: -4.69 SS G_CDS: 2.92 Total: -1.77 kcal Total: -5.56 8.31 2.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714706487.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.363 kcal (2) G-P(sol) polarization free energy of solvation -5.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) 2.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds