Wall clock time and date at job start Mon Mar 30 2020 03:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1 5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00033 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99793 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.46978 * 180.02562 * 14 13 12 16 16 H 1.08999 * 112.85552 * 43.80094 * 15 14 13 17 17 C 1.53780 * 113.61325 * 175.00200 * 15 14 13 18 18 C 1.53781 * 87.08220 * 139.97772 * 17 15 14 19 19 H 1.09008 * 113.61566 * 89.11242 * 18 17 15 20 20 O 1.42895 * 113.61715 * 219.93167 * 18 17 15 21 21 C 1.53779 * 87.08073 * 334.56767 * 18 17 15 22 22 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 23 23 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 24 24 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 25 25 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 26 26 H 1.00899 * 111.00283 * 303.95218 * 13 12 10 27 27 H 1.08995 * 109.47087 * 299.99901 * 14 13 12 28 28 H 1.09002 * 109.46903 * 59.99922 * 14 13 12 29 29 H 1.09000 * 113.61509 * 254.52700 * 17 15 14 30 30 H 1.08997 * 113.61607 * 25.34510 * 17 15 14 31 31 H 0.96702 * 114.00608 * 180.02562 * 20 18 17 32 32 H 1.09003 * 113.61256 * 270.87969 * 21 18 17 33 33 H 1.09002 * 113.61167 * 139.97909 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 1.4984 -7.2708 -0.0016 15 6 2.5233 -8.4067 -0.0015 16 1 3.3451 -8.2353 0.6938 17 6 1.8938 -9.8044 0.1213 18 6 2.9324 -10.2766 -0.9098 19 1 3.8670 -10.6169 -0.4638 20 8 2.4086 -11.1962 -1.8700 21 6 2.9816 -8.8230 -1.4091 22 1 -0.4850 0.8401 -0.0004 23 1 0.3535 -2.3906 0.0002 24 1 0.6170 -4.9209 0.8886 25 1 0.6176 -4.9205 -0.8913 26 1 2.8335 -5.9120 -0.7829 27 1 0.8738 -7.3454 0.8886 28 1 0.8731 -7.3451 -0.8914 29 1 2.0198 -10.2550 1.1058 30 1 0.8660 -9.8535 -0.2382 31 1 3.0573 -11.4972 -2.5210 32 1 2.2517 -8.6041 -2.1886 33 1 3.9858 -8.4813 -1.6602 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720915417.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:54 Heat of formation + Delta-G solvation = -98.053274 kcal Electronic energy + Delta-G solvation = -15289.245751 eV Core-core repulsion = 12542.165630 eV Total energy + Delta-G solvation = -2747.080121 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.48219 -40.00064 -36.96016 -35.98820 -35.18384 -33.27079 -29.78074 -27.23303 -26.64409 -25.21364 -22.79632 -21.16872 -20.39289 -19.90079 -18.51702 -17.73726 -17.01541 -16.56771 -16.37169 -15.88631 -15.53819 -15.28196 -14.88344 -14.47538 -14.14258 -13.52916 -13.39741 -13.36920 -13.07118 -12.78510 -12.44923 -12.33365 -12.17743 -12.10414 -11.69214 -11.51042 -11.12429 -10.66922 -10.35429 -10.02983 -9.34474 -8.47303 -5.96623 1.39880 1.41676 1.52969 2.03641 2.28931 2.88489 3.19663 3.35916 3.52283 3.65675 3.74611 3.93853 4.02896 4.31231 4.37371 4.48543 4.50988 4.61008 4.78622 4.83619 4.88322 4.90249 5.07939 5.25102 5.39780 5.51182 5.88620 6.10168 6.40318 6.59008 6.92483 7.11170 7.54622 8.09826 8.69944 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.082099 B = 0.003939 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.970495 B = 7106.502514 C = 7244.970297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.995 3.005 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.079 0.921 9 N -0.572 5.572 10 C 0.436 3.564 11 O -0.624 6.624 12 C 0.064 3.936 13 N -0.682 5.682 14 C 0.073 3.927 15 C -0.105 4.105 16 H 0.097 0.903 17 C -0.120 4.120 18 C 0.080 3.920 19 H 0.099 0.901 20 O -0.580 6.580 21 C -0.168 4.168 22 H 0.278 0.722 23 H 0.397 0.603 24 H 0.104 0.896 25 H 0.064 0.936 26 H 0.343 0.657 27 H 0.079 0.921 28 H 0.035 0.965 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.394 0.606 32 H 0.079 0.921 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.004 -17.408 -2.018 17.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.467 4.467 8 H 0.097 0.903 9 N -0.209 5.209 10 C 0.224 3.776 11 O -0.510 6.510 12 C -0.069 4.069 13 N -0.314 5.314 14 C -0.056 4.056 15 C -0.124 4.124 16 H 0.116 0.884 17 C -0.158 4.158 18 C 0.021 3.979 19 H 0.116 0.884 20 O -0.388 6.388 21 C -0.206 4.206 22 H 0.088 0.912 23 H 0.230 0.770 24 H 0.122 0.878 25 H 0.082 0.918 26 H 0.161 0.839 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.244 0.756 32 H 0.097 0.903 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.194 -17.148 -0.996 17.218 hybrid contribution 0.014 0.934 -1.222 1.538 sum 1.207 -16.214 -2.218 16.409 Atomic orbital electron populations 1.69671 1.06878 1.29437 1.50168 1.26066 0.96564 1.02480 0.96141 0.84968 0.77755 0.76489 0.79001 1.19616 1.19421 1.19672 1.19660 0.92766 0.84061 1.50177 0.90269 1.41930 1.09338 1.04708 1.64970 1.20881 0.88272 0.86182 0.82265 1.90482 1.15842 1.87974 1.56717 1.21548 0.94106 0.88244 1.02995 1.60102 1.19106 1.00985 1.51198 1.21996 0.95453 0.87191 1.00942 1.22289 0.98855 0.93228 0.98007 0.88441 1.23064 0.99339 0.94230 0.99206 1.23363 0.97428 0.86971 0.90102 0.88368 1.86473 1.42618 1.64280 1.45420 1.23762 1.02137 0.97668 0.97042 0.91232 0.76955 0.87788 0.91800 0.83868 0.90308 0.94711 0.89650 0.89770 0.75639 0.90275 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.15 13.05 21.66 0.28 -49.87 16 2 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 3 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.34 -19.44 9.68 84.04 0.81 -18.62 16 8 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 9 N -0.57 -29.94 5.29 -306.98 -1.62 -31.57 16 10 C 0.44 21.30 7.82 87.66 0.69 21.99 16 11 O -0.62 -35.30 15.78 -3.07 -0.05 -35.35 16 12 C 0.06 2.25 6.17 85.56 0.53 2.78 16 13 N -0.68 -22.25 6.13 -517.92 -3.17 -25.42 16 14 C 0.07 1.77 5.52 86.30 0.48 2.24 16 15 C -0.11 -2.16 3.90 -10.27 -0.04 -2.20 16 16 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 17 C -0.12 -2.13 7.47 31.12 0.23 -1.89 16 18 C 0.08 1.32 5.21 31.12 0.16 1.48 16 19 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 20 O -0.58 -10.04 13.67 -148.98 -2.04 -12.08 16 21 C -0.17 -3.21 7.47 31.12 0.23 -2.97 16 22 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 23 H 0.40 19.66 7.90 -92.71 -0.73 18.93 16 24 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 25 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.34 11.77 8.43 -89.69 -0.76 11.01 16 27 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.03 0.81 7.84 -2.39 -0.02 0.79 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.58 8.10 -2.39 -0.02 1.56 16 31 H 0.39 3.39 9.12 -74.06 -0.68 2.72 16 32 H 0.08 1.63 7.90 -2.39 -0.02 1.62 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -68.63 285.27 -2.04 -70.67 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: -1.03 Total: 35.83 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 3.56 Total: 2.58 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -4.51 Total: -106.85 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -2.09 Total: -47.43 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -68.63 -2.04 -70.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720915417.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.385 kcal (2) G-P(sol) polarization free energy of solvation -68.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds