Wall clock time and date at job start Mon Mar 30 2020 03:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86805 * 119.99755 * 2 1 4 4 H 1.48500 * 109.47088 * 90.00226 * 3 2 1 5 5 H 1.48505 * 109.47152 * 209.99703 * 3 2 1 6 6 H 1.48494 * 109.47142 * 329.99703 * 3 2 1 7 7 C 1.38947 * 120.00367 * 180.26985 * 2 1 3 8 8 H 1.08004 * 119.99305 * 0.02562 * 7 2 1 9 9 N 1.37095 * 120.00240 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99970 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99980 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00150 * 179.97438 * 10 9 7 13 13 N 1.46892 * 109.47095 * 180.02562 * 12 10 9 14 14 C 1.46905 * 110.99935 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47234 * 180.02562 * 14 13 12 16 16 H 1.09000 * 112.84641 * 45.33234 * 15 14 13 17 17 C 1.53781 * 113.61343 * 176.53116 * 15 14 13 18 18 C 1.53783 * 87.08243 * 139.98078 * 17 15 14 19 19 H 1.08992 * 113.61522 * 219.93670 * 18 17 15 20 20 O 1.42898 * 113.61389 * 89.11140 * 18 17 15 21 21 C 1.53784 * 113.61202 * 274.13688 * 15 14 13 22 22 H 0.97005 * 120.00032 * 359.72583 * 1 2 3 23 23 H 0.96999 * 119.99986 * 0.02562 * 9 7 2 24 24 H 1.08993 * 109.47028 * 300.00805 * 12 10 9 25 25 H 1.09000 * 109.46643 * 60.00429 * 12 10 9 26 26 H 1.00903 * 111.00303 * 56.05256 * 13 12 10 27 27 H 1.09002 * 109.47091 * 300.00135 * 14 13 12 28 28 H 1.09001 * 109.46854 * 60.00162 * 14 13 12 29 29 H 1.09007 * 113.61260 * 254.52994 * 17 15 14 30 30 H 1.08996 * 113.61430 * 25.34518 * 17 15 14 31 31 H 0.96701 * 113.99829 * 180.02562 * 20 18 17 32 32 H 1.08992 * 113.61468 * 334.56415 * 21 15 14 33 33 H 1.09005 * 113.60998 * 105.47488 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 1.4001 5 1 3.5457 1.4403 -0.7000 6 1 1.4456 2.6527 -0.7001 7 6 2.0090 -1.2033 -0.0057 8 1 1.4689 -2.1386 -0.0105 9 7 3.3799 -1.2032 -0.0062 10 6 4.0538 -2.3704 -0.0122 11 8 3.4474 -3.4208 -0.0176 12 6 5.5609 -2.3704 -0.0134 13 7 6.0505 -3.7553 -0.0209 14 6 7.5190 -3.7945 -0.0216 15 6 7.9904 -5.2501 -0.0302 16 1 7.4487 -5.8661 -0.7479 17 6 9.5182 -5.4023 -0.1168 18 6 9.3822 -6.5521 0.8953 19 1 10.1707 -6.5671 1.6475 20 8 9.1709 -7.8279 0.2872 21 6 8.0839 -5.8755 1.3716 22 1 -0.4850 0.8401 0.0040 23 1 3.8649 -0.3632 -0.0022 24 1 5.9235 -1.8523 -0.9011 25 1 5.9248 -1.8608 0.8788 26 1 5.6745 -4.2676 -0.8047 27 1 7.8956 -3.2858 -0.9091 28 1 7.8962 -3.2953 0.8709 29 1 9.8701 -5.7230 -1.0974 30 1 10.0652 -4.5420 0.2686 31 1 9.0842 -8.5550 0.9188 32 1 8.2382 -5.1454 2.1660 33 1 7.2796 -6.5777 1.5910 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720977026.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:57 Heat of formation + Delta-G solvation = -61.422515 kcal Electronic energy + Delta-G solvation = -15371.600960 eV Core-core repulsion = 12626.109268 eV Total energy + Delta-G solvation = -2745.491692 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.62033 -38.37967 -35.86030 -34.33954 -33.71511 -31.63696 -28.60905 -25.87124 -25.60353 -23.53993 -21.96723 -19.83965 -19.29997 -18.31306 -17.25544 -16.06676 -15.76611 -15.20951 -15.12495 -14.70157 -14.12254 -13.82254 -13.58755 -13.13253 -12.69665 -12.46041 -12.37135 -12.16924 -11.73938 -11.65308 -11.15739 -10.94376 -10.87484 -10.58025 -10.27981 -9.96139 -9.79889 -9.55282 -8.54495 -8.16684 -8.06429 -6.29258 -3.80580 3.03823 3.08142 3.16043 3.77087 3.86864 4.07945 4.12381 4.52423 4.59018 4.68832 4.83082 5.05107 5.23923 5.29700 5.46569 5.52778 5.56767 5.67310 5.71217 5.75208 5.84976 5.97006 6.00925 6.11794 6.36181 7.17323 7.43297 7.60550 7.64859 8.16828 8.62248 8.97159 9.44659 9.85595 10.83972 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.067347 B = 0.004324 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.659167 B = 6474.303673 C = 6756.434860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.277 1.277 7 C -0.305 4.305 8 H 0.119 0.881 9 N -0.592 5.592 10 C 0.450 3.550 11 O -0.564 6.564 12 C 0.048 3.952 13 N -0.668 5.668 14 C 0.068 3.932 15 C -0.098 4.098 16 H 0.094 0.906 17 C -0.130 4.130 18 C 0.073 3.927 19 H 0.064 0.936 20 O -0.553 6.553 21 C -0.155 4.155 22 H 0.273 0.727 23 H 0.370 0.630 24 H 0.043 0.957 25 H 0.086 0.914 26 H 0.350 0.650 27 H 0.027 0.973 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.380 0.620 32 H 0.087 0.913 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.093 -6.068 1.474 21.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.202 1.202 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.236 3.764 11 O -0.446 6.446 12 C -0.085 4.085 13 N -0.300 5.300 14 C -0.062 4.062 15 C -0.116 4.116 16 H 0.112 0.888 17 C -0.168 4.168 18 C 0.014 3.986 19 H 0.082 0.918 20 O -0.359 6.359 21 C -0.193 4.193 22 H 0.084 0.916 23 H 0.203 0.797 24 H 0.061 0.939 25 H 0.104 0.896 26 H 0.170 0.830 27 H 0.045 0.955 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.227 0.773 32 H 0.106 0.894 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 19.441 -6.370 1.598 20.520 hybrid contribution 0.678 1.469 -0.364 1.658 sum 20.119 -4.901 1.234 20.744 Atomic orbital electron populations 1.69626 1.05639 1.27460 1.49520 1.25038 0.95495 0.97966 0.97695 0.86661 0.79742 0.84031 0.78883 1.19609 1.19541 1.20200 1.19441 0.79287 0.96643 1.47988 0.86300 1.42209 1.07517 1.06166 1.67241 1.19746 0.88267 0.84535 0.83854 1.90564 1.69467 1.30961 1.53591 1.21705 0.94936 0.90702 1.01170 1.60045 1.06152 1.12571 1.51263 1.22003 0.88384 0.95688 1.00118 1.22426 0.94993 0.95991 0.98228 0.88823 1.23072 0.96927 0.96771 0.99995 1.22793 0.96642 0.83798 0.95339 0.91815 1.86454 1.95318 1.16656 1.37430 1.23608 0.97999 1.00399 0.97294 0.91639 0.79700 0.93889 0.89587 0.83038 0.95524 0.91120 0.90775 0.88901 0.77286 0.89432 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.05 13.96 55.50 0.77 -25.28 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.55 27.74 -169.99 -4.72 14.84 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.77 10.16 -14.94 -0.15 -8.92 16 8 H 0.12 3.91 7.39 -52.48 -0.39 3.52 16 9 N -0.59 -14.38 5.09 -10.96 -0.06 -14.43 16 10 C 0.45 10.49 7.82 -10.98 -0.09 10.41 16 11 O -0.56 -15.55 15.78 5.55 0.09 -15.47 16 12 C 0.05 0.82 6.17 -4.98 -0.03 0.79 16 13 N -0.67 -10.79 6.13 -115.06 -0.70 -11.49 16 14 C 0.07 0.82 5.51 -3.82 -0.02 0.80 16 15 C -0.10 -1.10 3.83 -89.81 -0.34 -1.45 16 16 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 17 C -0.13 -1.21 7.48 -25.92 -0.19 -1.40 16 18 C 0.07 0.67 5.28 -25.82 -0.14 0.53 16 19 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 20 O -0.55 -5.47 13.59 -35.23 -0.48 -5.95 16 21 C -0.16 -1.63 7.47 -25.82 -0.19 -1.82 16 22 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.37 7.87 5.76 -40.82 -0.24 7.64 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.35 5.93 8.43 -39.29 -0.33 5.60 16 27 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.81 7.88 -51.93 -0.41 0.40 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.38 2.11 9.12 45.56 0.42 2.53 16 32 H 0.09 0.87 7.92 -51.93 -0.41 0.45 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 282.12 15.07 4.25 4.25 Total: -1.00 -33.82 282.12 -6.00 -39.82 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -3.91 Total: 13.74 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -1.25 Total: -0.02 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.01 Total: -51.21 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.39 Total: -21.42 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.72 Total: 14.84 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.82 -6.00 -39.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720977026.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.603 kcal (2) G-P(sol) polarization free energy of solvation -33.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds