Wall clock time and date at job start Mon Mar 30 2020 03:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 113.25628 * 2 1 4 4 N 1.34782 * 120.00047 * 47.04869 * 3 2 1 5 5 O 1.21280 * 120.00216 * 227.05206 * 3 2 1 6 6 C 1.53514 * 114.16983 * 227.05003 * 2 1 3 7 7 N 1.47482 * 87.93039 * 220.14031 * 6 2 1 8 8 C 1.46901 * 110.99764 * 138.70591 * 7 6 2 9 9 C 1.53000 * 109.46769 * 169.99993 * 8 7 6 10 10 H 1.08992 * 109.47399 * 59.99697 * 9 8 7 11 11 O 1.42900 * 109.47041 * 299.99294 * 9 8 7 12 12 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 13 13 H 1.07996 * 119.99928 * 359.97438 * 12 9 8 14 14 C 1.37880 * 119.99611 * 179.97438 * 12 9 8 15 15 N 1.31511 * 120.00327 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99743 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.46828 * 90.00241 * 16 14 12 18 18 H 1.48494 * 109.47178 * 209.99936 * 16 14 12 19 19 H 1.48500 * 109.47075 * 330.00183 * 16 14 12 20 20 C 1.47480 * 87.83699 * 27.01095 * 7 6 2 21 21 H 1.08998 * 109.47303 * 192.94927 * 1 2 3 22 22 H 1.08999 * 109.47631 * 312.95074 * 1 2 3 23 23 H 1.09001 * 109.47250 * 72.94836 * 1 2 3 24 24 H 0.97001 * 119.99724 * 0.02562 * 4 3 2 25 25 H 0.96993 * 120.00054 * 179.97438 * 4 3 2 26 26 H 1.08994 * 113.47382 * 105.36875 * 6 2 1 27 27 H 1.09003 * 113.47448 * 334.90782 * 6 2 1 28 28 H 1.09002 * 109.47401 * 49.99700 * 8 7 6 29 29 H 1.09001 * 109.46874 * 289.99713 * 8 7 6 30 30 H 0.96698 * 114.00516 * 300.00983 * 11 9 8 31 31 H 0.97000 * 120.00354 * 180.02562 * 15 14 12 32 32 H 1.08999 * 113.47664 * 87.75895 * 20 7 6 33 33 H 1.08994 * 113.47488 * 218.22090 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1250 1.3845 0.0000 4 7 1.6604 2.3177 0.8543 5 8 3.0219 1.6591 -0.7688 6 6 2.1586 -0.9543 -1.0251 7 7 3.1647 -1.3023 -0.0045 8 6 3.4391 -2.7455 -0.0065 9 6 4.6531 -3.0349 0.8786 10 1 4.4471 -2.7056 1.8970 11 8 5.7901 -2.3333 0.3718 12 6 4.9349 -4.5154 0.8761 13 1 4.3104 -5.1830 0.3012 14 6 5.9901 -5.0174 1.6079 15 7 6.7510 -4.2043 2.3077 16 14 6.3391 -6.8525 1.6055 17 1 7.2754 -7.1768 0.4993 18 1 6.9504 -7.2419 2.9015 19 1 5.0690 -7.5977 1.4135 20 6 2.1627 -0.9561 1.0208 21 1 -0.3634 -1.0015 0.2303 22 1 -0.3634 0.7002 0.7522 23 1 -0.3634 0.3013 -0.9825 24 1 0.9433 2.0980 1.4694 25 1 2.0436 3.2087 0.8546 26 1 2.5780 -0.4447 -1.8925 27 1 1.5103 -1.7871 -1.2976 28 1 3.6451 -3.0748 -1.0249 29 1 2.5717 -3.2807 0.3801 30 1 6.0316 -2.5765 -0.5323 31 1 7.4935 -4.5575 2.8222 32 1 1.5157 -1.7895 1.2944 33 1 2.5859 -0.4482 1.8873 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930808810.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:19 Heat of formation + Delta-G solvation = -54.659123 kcal Electronic energy + Delta-G solvation = -16262.778985 eV Core-core repulsion = 13517.580575 eV Total energy + Delta-G solvation = -2745.198410 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.82224 -38.03824 -35.45703 -33.74307 -32.05324 -31.61506 -28.54060 -25.92126 -25.64346 -23.68673 -22.01051 -20.18036 -18.99205 -17.15986 -16.89309 -16.35345 -15.26183 -14.90489 -14.76805 -14.51683 -13.93860 -13.81517 -13.48502 -12.93219 -12.69111 -12.39835 -12.32223 -11.92013 -11.21655 -11.00210 -10.89328 -10.61426 -10.42993 -10.21333 -9.97349 -9.67493 -9.60565 -9.01264 -8.54378 -8.29551 -7.87289 -5.95845 -4.15008 2.76379 3.29679 3.36421 3.38485 3.52118 4.30595 4.36776 4.51231 4.76253 5.00095 5.29159 5.32179 5.49572 5.55683 5.60646 5.74831 5.81229 5.95337 6.06569 6.10425 6.27284 6.59165 6.79021 6.83548 6.92531 7.36173 7.59104 7.79191 7.91691 8.24274 8.40473 8.89115 9.52025 9.69688 11.08183 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.050471 B = 0.006016 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.643855 B = 4652.760790 C = 4853.373627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.126 4.126 3 C 0.551 3.449 4 N -0.859 5.859 5 O -0.523 6.523 6 C 0.018 3.982 7 N -0.446 5.446 8 C -0.006 4.006 9 C 0.242 3.758 10 H 0.051 0.949 11 O -0.553 6.553 12 C -0.575 4.575 13 H 0.054 0.946 14 C 0.079 3.921 15 N -0.858 5.858 16 Si 0.889 3.111 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.021 3.979 21 H 0.068 0.932 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.398 0.602 25 H 0.400 0.600 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.039 0.961 30 H 0.342 0.658 31 H 0.260 0.740 32 H 0.077 0.923 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.414 8.418 -2.330 16.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.130 4.130 3 C 0.335 3.665 4 N -0.423 5.423 5 O -0.397 6.397 6 C -0.111 4.111 7 N -0.167 5.167 8 C -0.135 4.135 9 C 0.184 3.816 10 H 0.069 0.931 11 O -0.354 6.354 12 C -0.614 4.614 13 H 0.072 0.928 14 C -0.127 4.127 15 N -0.493 5.493 16 Si 0.716 3.284 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.109 4.109 21 H 0.087 0.913 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.227 0.773 25 H 0.230 0.770 26 H 0.110 0.890 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.185 0.815 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.001 8.983 -2.178 15.953 hybrid contribution -0.799 -1.657 -0.079 1.841 sum -13.800 7.326 -2.257 15.787 Atomic orbital electron populations 1.21698 0.92173 1.02809 1.02313 1.22152 0.95971 0.93023 1.01860 1.19636 0.81709 0.85502 0.79661 1.43803 1.41949 1.15212 1.41333 1.90748 1.28789 1.80478 1.39637 1.23757 0.93891 0.96320 0.97168 1.69183 1.26679 1.18991 1.01876 1.23669 1.01440 0.86329 1.02038 1.19181 0.80278 0.90224 0.91900 0.93108 1.86579 1.50135 1.66979 1.31733 1.21677 1.15177 0.93182 1.31340 0.92789 1.25035 0.95720 0.97474 0.94438 1.70092 1.16778 1.34171 1.28307 0.86679 0.78483 0.85733 0.77485 1.20507 1.21132 1.19919 1.23907 0.93844 0.96790 0.96375 0.91314 0.92179 0.91774 0.77347 0.76990 0.89034 0.91281 0.91814 0.94305 0.81528 0.93008 0.90545 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 9.23 37.16 0.34 -0.84 16 2 C -0.13 -1.67 1.40 -155.13 -0.22 -1.88 16 3 C 0.55 8.06 7.15 -10.99 -0.08 7.98 16 4 N -0.86 -8.39 8.75 31.22 0.27 -8.11 16 5 O -0.52 -10.19 16.81 5.56 0.09 -10.09 16 6 C 0.02 0.28 6.60 -7.54 -0.05 0.23 16 7 N -0.45 -8.66 6.09 -244.58 -1.49 -10.15 16 8 C -0.01 -0.14 4.42 -3.82 -0.02 -0.15 16 9 C 0.24 6.41 3.10 -27.88 -0.09 6.32 16 10 H 0.05 1.48 8.14 -51.93 -0.42 1.06 16 11 O -0.55 -15.43 12.59 -35.23 -0.44 -15.87 16 12 C -0.58 -16.11 8.76 -34.44 -0.30 -16.41 16 13 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 14 C 0.08 2.27 5.40 -17.82 -0.10 2.18 16 15 N -0.86 -26.07 12.84 55.43 0.71 -25.36 16 16 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.02 0.32 6.86 -7.54 -0.05 0.27 16 21 H 0.07 0.57 7.91 -51.93 -0.41 0.16 16 22 H 0.06 0.40 6.92 -51.93 -0.36 0.04 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.40 2.64 7.64 -40.82 -0.31 2.32 16 25 H 0.40 3.45 8.93 -40.82 -0.36 3.09 16 26 H 0.09 1.55 7.51 -51.93 -0.39 1.16 16 27 H 0.07 0.95 7.87 -51.93 -0.41 0.54 16 28 H 0.06 1.33 8.08 -51.93 -0.42 0.91 16 29 H 0.04 0.77 7.30 -51.93 -0.38 0.39 16 30 H 0.34 8.62 9.04 45.56 0.41 9.04 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.08 1.08 7.22 -51.93 -0.38 0.71 16 33 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 LS Contribution 279.73 15.07 4.22 4.22 Total: -1.00 -35.35 279.73 -6.03 -41.38 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -3.81 Total: 9.89 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -0.56 Total: -2.30 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: -0.50 Total: -43.62 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.35 Total: -25.96 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -35.35 -6.03 -41.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930808810.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.276 kcal (2) G-P(sol) polarization free energy of solvation -35.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds