Wall clock time and date at job start Mon Mar 30 2020 03:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 113.25628 * 2 1 4 4 N 1.34782 * 120.00047 * 47.04869 * 3 2 1 5 5 O 1.21280 * 120.00216 * 227.05206 * 3 2 1 6 6 C 1.53514 * 114.16983 * 227.05003 * 2 1 3 7 7 N 1.47482 * 87.93039 * 220.14031 * 6 2 1 8 8 C 1.46901 * 110.99764 * 138.70591 * 7 6 2 9 9 C 1.53000 * 109.46769 * 169.99993 * 8 7 6 10 10 H 1.08992 * 109.47399 * 59.99697 * 9 8 7 11 11 O 1.42900 * 109.47041 * 299.99294 * 9 8 7 12 12 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 13 13 H 1.07996 * 119.99928 * 359.97438 * 12 9 8 14 14 C 1.37880 * 119.99611 * 179.97438 * 12 9 8 15 15 N 1.31511 * 120.00327 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99743 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.46828 * 90.00241 * 16 14 12 18 18 H 1.48494 * 109.47178 * 209.99936 * 16 14 12 19 19 H 1.48500 * 109.47075 * 330.00183 * 16 14 12 20 20 C 1.47480 * 87.83699 * 27.01095 * 7 6 2 21 21 H 1.08998 * 109.47303 * 192.94927 * 1 2 3 22 22 H 1.08999 * 109.47631 * 312.95074 * 1 2 3 23 23 H 1.09001 * 109.47250 * 72.94836 * 1 2 3 24 24 H 0.97001 * 119.99724 * 0.02562 * 4 3 2 25 25 H 0.96993 * 120.00054 * 179.97438 * 4 3 2 26 26 H 1.08994 * 113.47382 * 105.36875 * 6 2 1 27 27 H 1.09003 * 113.47448 * 334.90782 * 6 2 1 28 28 H 1.09002 * 109.47401 * 49.99700 * 8 7 6 29 29 H 1.09001 * 109.46874 * 289.99713 * 8 7 6 30 30 H 0.96698 * 114.00516 * 300.00983 * 11 9 8 31 31 H 0.97000 * 120.00354 * 180.02562 * 15 14 12 32 32 H 1.08999 * 113.47664 * 87.75895 * 20 7 6 33 33 H 1.08994 * 113.47488 * 218.22090 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1250 1.3845 0.0000 4 7 1.6604 2.3177 0.8543 5 8 3.0219 1.6591 -0.7688 6 6 2.1586 -0.9543 -1.0251 7 7 3.1647 -1.3023 -0.0045 8 6 3.4391 -2.7455 -0.0065 9 6 4.6531 -3.0349 0.8786 10 1 4.4471 -2.7056 1.8970 11 8 5.7901 -2.3333 0.3718 12 6 4.9349 -4.5154 0.8761 13 1 4.3104 -5.1830 0.3012 14 6 5.9901 -5.0174 1.6079 15 7 6.7510 -4.2043 2.3077 16 14 6.3391 -6.8525 1.6055 17 1 7.2754 -7.1768 0.4993 18 1 6.9504 -7.2419 2.9015 19 1 5.0690 -7.5977 1.4135 20 6 2.1627 -0.9561 1.0208 21 1 -0.3634 -1.0015 0.2303 22 1 -0.3634 0.7002 0.7522 23 1 -0.3634 0.3013 -0.9825 24 1 0.9433 2.0980 1.4694 25 1 2.0436 3.2087 0.8546 26 1 2.5780 -0.4447 -1.8925 27 1 1.5103 -1.7871 -1.2976 28 1 3.6451 -3.0748 -1.0249 29 1 2.5717 -3.2807 0.3801 30 1 6.0316 -2.5765 -0.5323 31 1 7.4935 -4.5575 2.8222 32 1 1.5157 -1.7895 1.2944 33 1 2.5859 -0.4482 1.8873 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930808810.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:18 Heat of formation + Delta-G solvation = -87.806472 kcal Electronic energy + Delta-G solvation = -16264.216362 eV Core-core repulsion = 13517.580575 eV Total energy + Delta-G solvation = -2746.635787 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.04420 -39.34042 -37.46909 -34.84318 -34.23714 -32.92853 -30.17457 -27.51039 -26.97096 -25.07216 -23.50455 -21.95379 -20.06389 -19.03040 -18.13409 -17.48937 -16.69476 -16.63769 -16.50472 -16.16065 -15.43861 -15.25372 -15.03584 -14.52071 -13.87256 -13.67527 -13.37043 -13.21858 -13.05617 -12.91231 -12.79560 -12.22304 -11.99554 -11.79553 -11.39002 -11.05766 -10.87243 -10.72028 -10.61483 -10.13421 -9.56607 -8.12958 -6.40478 1.40507 1.41633 1.52519 1.62086 2.38554 2.54231 3.11874 3.16350 3.25125 3.72253 4.06985 4.15653 4.21476 4.39526 4.43838 4.53248 4.66362 4.72387 4.83630 4.91404 4.95991 5.06487 5.28905 5.38438 5.62766 5.81224 5.94669 6.02953 6.19250 6.50941 6.73643 7.34058 7.41044 7.59740 8.91871 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.050471 B = 0.006016 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.643855 B = 4652.760790 C = 4853.373627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.106 4.106 3 C 0.542 3.458 4 N -0.833 5.833 5 O -0.581 6.581 6 C 0.018 3.982 7 N -0.488 5.488 8 C 0.014 3.986 9 C 0.239 3.761 10 H 0.013 0.987 11 O -0.575 6.575 12 C -0.588 4.588 13 H 0.063 0.937 14 C 0.022 3.978 15 N -0.903 5.903 16 Si 0.965 3.035 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.261 1.261 20 C 0.019 3.981 21 H 0.081 0.919 22 H 0.086 0.914 23 H 0.073 0.927 24 H 0.417 0.583 25 H 0.408 0.592 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.350 0.650 31 H 0.261 0.739 32 H 0.097 0.903 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.716 7.739 -2.409 18.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.110 4.110 3 C 0.327 3.673 4 N -0.398 5.398 5 O -0.460 6.460 6 C -0.111 4.111 7 N -0.210 5.210 8 C -0.115 4.115 9 C 0.181 3.819 10 H 0.031 0.969 11 O -0.378 6.378 12 C -0.626 4.626 13 H 0.081 0.919 14 C -0.180 4.180 15 N -0.540 5.540 16 Si 0.789 3.211 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.185 1.185 20 C -0.111 4.111 21 H 0.100 0.900 22 H 0.105 0.895 23 H 0.092 0.908 24 H 0.249 0.751 25 H 0.239 0.761 26 H 0.090 0.910 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.194 0.806 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.367 8.323 -2.227 17.618 hybrid contribution -0.096 -1.350 -0.023 1.354 sum -15.463 6.973 -2.250 17.111 Atomic orbital electron populations 1.21740 0.88131 1.04587 1.03941 1.22025 0.98744 0.91259 0.98937 1.20014 0.81107 0.86657 0.79553 1.43597 1.41514 1.14752 1.39955 1.90728 1.31421 1.81608 1.42273 1.23804 0.93390 0.97614 0.96327 1.69081 1.29791 1.17320 1.04825 1.23256 0.99383 0.88259 1.00584 1.19109 0.82035 0.89480 0.91273 0.96878 1.86519 1.51331 1.67445 1.32475 1.22075 1.15254 0.94198 1.31046 0.91878 1.25983 0.95485 1.02654 0.93871 1.70251 1.17569 1.36688 1.29525 0.85484 0.78721 0.79399 0.77489 1.19954 1.20895 1.18468 1.23986 0.93374 0.97977 0.95738 0.90000 0.89472 0.90777 0.75120 0.76085 0.90956 0.88768 0.91798 0.92900 0.80607 0.93025 0.88555 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.23 71.98 0.66 -1.08 16 2 C -0.11 -2.59 1.40 -52.58 -0.07 -2.66 16 3 C 0.54 15.31 7.15 87.65 0.63 15.94 16 4 N -0.83 -14.56 8.75 -173.53 -1.52 -16.08 16 5 O -0.58 -23.00 16.81 -3.03 -0.05 -23.05 16 6 C 0.02 0.54 6.60 83.58 0.55 1.09 16 7 N -0.49 -18.93 6.09 -927.72 -5.65 -24.58 16 8 C 0.01 0.58 4.42 86.30 0.38 0.96 16 9 C 0.24 12.91 3.10 29.85 0.09 13.00 16 10 H 0.01 0.81 8.14 -2.39 -0.02 0.79 16 11 O -0.57 -33.14 12.59 -148.98 -1.88 -35.02 16 12 C -0.59 -33.00 8.76 25.60 0.22 -32.78 16 13 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 14 C 0.02 1.27 5.40 84.66 0.46 1.73 16 15 N -0.90 -56.01 12.84 21.45 0.28 -55.74 16 16 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 20 C 0.02 0.56 6.86 83.58 0.57 1.13 16 21 H 0.08 0.99 7.91 -2.39 -0.02 0.97 16 22 H 0.09 0.75 6.92 -2.39 -0.02 0.73 16 23 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 24 H 0.42 4.17 7.64 -92.71 -0.71 3.46 16 25 H 0.41 6.33 8.93 -92.71 -0.83 5.51 16 26 H 0.07 2.46 7.51 -2.39 -0.02 2.44 16 27 H 0.09 2.35 7.87 -2.39 -0.02 2.33 16 28 H 0.06 2.64 8.08 -2.39 -0.02 2.62 16 29 H 0.05 2.03 7.30 -2.39 -0.02 2.01 16 30 H 0.35 18.26 9.04 -74.06 -0.67 17.59 16 31 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 32 H 0.10 2.50 7.22 -2.39 -0.02 2.48 16 33 H 0.07 2.23 8.11 -2.39 -0.02 2.21 16 Total: -1.00 -78.89 279.73 -4.36 -83.25 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: -1.06 Total: 27.96 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 3.50 Total: -2.67 kcal Atomic # 7 Polarization: -89.50 SS G_CDS: -6.89 Total: -96.40 kcal Atomic # 8 Polarization: -56.14 SS G_CDS: -1.93 Total: -58.07 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -78.89 -4.36 -83.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930808810.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.558 kcal (2) G-P(sol) polarization free energy of solvation -78.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds