Wall clock time and date at job start Mon Mar 30 2020 03:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00626 * 2 1 4 4 H 1.48504 * 109.47033 * 269.99734 * 3 2 1 5 5 H 1.48501 * 109.46883 * 29.99235 * 3 2 1 6 6 H 1.48493 * 109.47774 * 149.99399 * 3 2 1 7 7 C 1.37878 * 119.99663 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00145 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00244 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47589 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47364 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99966 * 180.02562 * 11 10 9 13 13 O 1.21584 * 120.00434 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00188 * 179.97438 * 12 11 10 15 15 C 1.47579 * 134.49439 * 179.97438 * 14 12 11 16 16 C 1.53950 * 86.11621 * 204.63969 * 15 14 12 17 17 C 1.53004 * 113.73988 * 221.94050 * 16 15 14 18 18 O 1.42901 * 109.46860 * 183.07539 * 17 16 15 19 19 C 1.47925 * 134.49772 * 359.97438 * 14 12 11 20 20 H 0.97006 * 119.99545 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47024 * 60.00141 * 9 7 2 22 22 H 1.09006 * 109.47264 * 300.00731 * 9 7 2 23 23 H 1.09000 * 109.47063 * 59.99871 * 10 9 7 24 24 H 1.09006 * 109.47175 * 300.00493 * 10 9 7 25 25 H 0.97005 * 120.00077 * 359.97438 * 11 10 9 26 26 H 1.09003 * 113.77049 * 90.34034 * 15 14 12 27 27 H 1.08993 * 113.77081 * 318.93795 * 15 14 12 28 28 H 1.09002 * 113.74276 * 90.74001 * 16 15 14 29 29 H 1.08998 * 109.46823 * 303.07465 * 17 16 15 30 30 H 1.08998 * 109.46745 * 63.07477 * 17 16 15 31 31 H 0.96699 * 113.99952 * 180.02562 * 18 17 16 32 32 H 1.09006 * 113.87423 * 41.10256 * 19 14 12 33 33 H 1.08997 * 113.77410 * 269.60428 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1943 0.0011 10 6 4.0214 -2.6367 0.0010 11 7 5.4863 -2.6368 0.0022 12 6 6.1601 -3.8040 0.0018 13 8 5.5522 -4.8570 0.0009 14 7 7.5079 -3.8042 0.0023 15 6 8.5421 -4.8570 0.0026 16 6 9.4648 -3.8043 0.6435 17 6 10.8868 -3.8061 0.0789 18 8 11.6802 -2.8491 0.7836 19 6 8.5448 -2.7492 0.0029 20 1 -0.4850 0.8401 -0.0004 21 1 3.8744 -0.6803 0.8911 22 1 3.8752 -0.6805 -0.8888 23 1 3.6583 -3.1503 -0.8892 24 1 3.6576 -3.1508 0.8907 25 1 5.9714 -1.7968 0.0025 26 1 8.8547 -5.1661 -0.9948 27 1 8.3132 -5.6975 0.6576 28 1 9.4402 -3.8045 1.7333 29 1 11.3234 -4.7978 0.1973 30 1 10.8579 -3.5457 -0.9791 31 1 12.5960 -2.7956 0.4775 32 1 8.3181 -1.9081 0.6583 33 1 8.8582 -2.4405 -0.9943 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116760249.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:27 Heat of formation + Delta-G solvation = -49.463213 kcal Electronic energy + Delta-G solvation = -15433.960267 eV Core-core repulsion = 12688.987169 eV Total energy + Delta-G solvation = -2744.973098 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.38801 -38.28123 -36.59735 -34.85294 -32.76941 -30.99348 -29.59733 -26.40721 -26.11996 -24.20409 -20.97687 -20.72850 -19.50575 -17.81268 -17.62900 -16.89275 -16.33455 -15.85354 -15.13068 -14.61962 -14.20622 -13.92316 -13.53451 -13.30070 -12.96796 -12.82903 -12.58678 -12.29672 -11.46200 -11.40770 -11.17947 -11.15000 -10.37858 -10.36650 -10.21192 -9.94946 -9.69938 -9.30238 -8.82801 -8.60237 -8.29570 -6.09055 -4.08907 2.61132 3.26786 3.34377 3.36054 3.47098 3.68853 4.17114 4.20319 4.39677 4.68976 4.87456 4.93849 5.09844 5.17368 5.23931 5.28823 5.33139 5.43039 5.65252 5.95921 6.15811 6.27159 6.60634 6.85115 7.16254 7.22150 7.27199 7.43701 7.69650 8.29051 8.47576 8.92397 8.96377 9.51156 11.04053 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.040492 B = 0.004853 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.337020 B = 5768.377163 C = 6393.131339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.148 3.852 11 N -0.739 5.739 12 C 0.724 3.276 13 O -0.592 6.592 14 N -0.670 5.670 15 C 0.138 3.862 16 C -0.123 4.123 17 C 0.085 3.915 18 O -0.572 6.572 19 C 0.108 3.892 20 H 0.265 0.735 21 H 0.021 0.979 22 H 0.017 0.983 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.391 0.609 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.109 0.891 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.380 0.620 32 H 0.082 0.918 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.467 -4.643 -0.683 24.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.026 3.974 11 N -0.392 5.392 12 C 0.427 3.573 13 O -0.471 6.471 14 N -0.411 5.411 15 C 0.014 3.986 16 C -0.142 4.142 17 C 0.007 3.993 18 O -0.378 6.378 19 C -0.015 4.015 20 H 0.074 0.926 21 H 0.040 0.960 22 H 0.035 0.965 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.224 0.776 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.127 0.873 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.227 0.773 32 H 0.100 0.900 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 22.971 -5.216 -0.362 23.559 hybrid contribution 1.054 1.282 -0.423 1.713 sum 24.025 -3.934 -0.785 24.358 Atomic orbital electron populations 1.69906 1.06282 1.27022 1.50509 1.24994 0.94764 0.99127 0.94391 0.86745 0.80268 0.83541 0.78479 1.20238 1.21258 1.19116 1.20922 0.88611 0.94936 1.51554 0.90560 1.19795 0.97934 0.91390 0.96782 1.21397 0.74622 0.99900 1.01516 1.45474 1.08743 1.06172 1.78790 1.15524 0.79275 0.84832 0.77680 1.90904 1.66458 1.30900 1.58794 1.49113 1.02375 1.09967 1.79659 1.22869 0.82918 0.92464 1.00349 1.23174 0.91980 0.96875 1.02158 1.22120 0.90518 0.91869 0.94829 1.86503 1.26221 1.61906 1.63120 1.23260 0.84775 0.93023 1.00431 0.92563 0.96028 0.96494 0.92139 0.92116 0.77628 0.90137 0.89789 0.87261 0.92965 0.93047 0.77285 0.90008 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.52 -14.92 9.66 -34.44 -0.33 -15.26 16 8 H 0.08 2.36 7.99 -52.49 -0.42 1.94 16 9 C -0.02 -0.50 4.15 -27.89 -0.12 -0.62 16 10 C 0.15 3.21 5.61 -4.05 -0.02 3.19 16 11 N -0.74 -13.49 5.56 -65.23 -0.36 -13.85 16 12 C 0.72 13.49 8.76 -86.92 -0.76 12.73 16 13 O -0.59 -13.48 17.07 5.29 0.09 -13.39 16 14 N -0.67 -9.20 3.62 -183.81 -0.66 -9.87 16 15 C 0.14 1.38 8.40 -2.97 -0.02 1.35 16 16 C -0.12 -1.02 4.19 -89.69 -0.38 -1.39 16 17 C 0.09 0.51 6.89 37.16 0.26 0.77 16 18 O -0.57 -4.00 13.66 -35.23 -0.48 -4.48 16 19 C 0.11 1.06 8.02 -2.77 -0.02 1.04 16 20 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 21 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 22 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 23 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 24 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 25 H 0.39 6.12 8.09 -40.82 -0.33 5.79 16 26 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.25 7.88 -51.93 -0.41 -0.15 16 31 H 0.38 0.93 9.12 45.56 0.42 1.34 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.68 7.92 -51.93 -0.41 0.27 16 LS Contribution 284.27 15.07 4.28 4.28 Total: -1.00 -35.72 284.27 -6.57 -42.30 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -4.04 Total: 1.51 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -1.50 Total: 3.72 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.25 Total: -50.63 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.39 Total: -17.87 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -35.72 -6.57 -42.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116760249.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.167 kcal (2) G-P(sol) polarization free energy of solvation -35.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds