Wall clock time and date at job start Mon Mar 30 2020 03:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00626 * 2 1 4 4 H 1.48504 * 109.47033 * 269.99734 * 3 2 1 5 5 H 1.48501 * 109.46883 * 29.99235 * 3 2 1 6 6 H 1.48493 * 109.47774 * 149.99399 * 3 2 1 7 7 C 1.37878 * 119.99663 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00145 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00244 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47589 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47364 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99966 * 180.02562 * 11 10 9 13 13 O 1.21584 * 120.00434 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00188 * 179.97438 * 12 11 10 15 15 C 1.47579 * 134.49439 * 179.97438 * 14 12 11 16 16 C 1.53950 * 86.11621 * 204.63969 * 15 14 12 17 17 C 1.53004 * 113.73988 * 221.94050 * 16 15 14 18 18 O 1.42901 * 109.46860 * 183.07539 * 17 16 15 19 19 C 1.47925 * 134.49772 * 359.97438 * 14 12 11 20 20 H 0.97006 * 119.99545 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47024 * 60.00141 * 9 7 2 22 22 H 1.09006 * 109.47264 * 300.00731 * 9 7 2 23 23 H 1.09000 * 109.47063 * 59.99871 * 10 9 7 24 24 H 1.09006 * 109.47175 * 300.00493 * 10 9 7 25 25 H 0.97005 * 120.00077 * 359.97438 * 11 10 9 26 26 H 1.09003 * 113.77049 * 90.34034 * 15 14 12 27 27 H 1.08993 * 113.77081 * 318.93795 * 15 14 12 28 28 H 1.09002 * 113.74276 * 90.74001 * 16 15 14 29 29 H 1.08998 * 109.46823 * 303.07465 * 17 16 15 30 30 H 1.08998 * 109.46745 * 63.07477 * 17 16 15 31 31 H 0.96699 * 113.99952 * 180.02562 * 18 17 16 32 32 H 1.09006 * 113.87423 * 41.10256 * 19 14 12 33 33 H 1.08997 * 113.77410 * 269.60428 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1943 0.0011 10 6 4.0214 -2.6367 0.0010 11 7 5.4863 -2.6368 0.0022 12 6 6.1601 -3.8040 0.0018 13 8 5.5522 -4.8570 0.0009 14 7 7.5079 -3.8042 0.0023 15 6 8.5421 -4.8570 0.0026 16 6 9.4648 -3.8043 0.6435 17 6 10.8868 -3.8061 0.0789 18 8 11.6802 -2.8491 0.7836 19 6 8.5448 -2.7492 0.0029 20 1 -0.4850 0.8401 -0.0004 21 1 3.8744 -0.6803 0.8911 22 1 3.8752 -0.6805 -0.8888 23 1 3.6583 -3.1503 -0.8892 24 1 3.6576 -3.1508 0.8907 25 1 5.9714 -1.7968 0.0025 26 1 8.8547 -5.1661 -0.9948 27 1 8.3132 -5.6975 0.6576 28 1 9.4402 -3.8045 1.7333 29 1 11.3234 -4.7978 0.1973 30 1 10.8579 -3.5457 -0.9791 31 1 12.5960 -2.7956 0.4775 32 1 8.3181 -1.9081 0.6583 33 1 8.8582 -2.4405 -0.9943 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116760249.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:27 Heat of formation + Delta-G solvation = -79.352493 kcal Electronic energy + Delta-G solvation = -15435.256363 eV Core-core repulsion = 12688.987169 eV Total energy + Delta-G solvation = -2746.269194 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.47120 -39.45757 -37.18356 -36.58903 -34.80114 -32.48762 -30.96082 -27.42498 -27.12588 -25.74341 -22.67766 -21.88673 -20.62628 -19.04327 -18.87493 -18.16396 -17.32054 -17.12302 -16.29338 -16.24932 -15.65237 -15.37637 -14.92131 -14.62028 -14.35455 -13.76327 -13.55491 -13.38276 -13.23055 -13.02317 -12.22392 -12.17913 -12.05346 -11.85530 -11.77082 -11.53817 -11.22372 -10.79799 -10.74629 -10.26890 -9.54702 -8.30940 -6.38520 1.38321 1.41281 1.45524 1.52717 2.09283 2.36319 2.90287 3.03867 3.12975 3.60132 3.98937 4.25465 4.32775 4.38810 4.40911 4.44669 4.55297 4.58053 4.70317 4.72179 4.77498 4.86050 5.13359 5.29451 5.37892 5.41443 5.64276 6.17533 6.24371 6.68499 6.97941 7.01147 7.25957 7.53538 8.85974 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.040492 B = 0.004853 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.337020 B = 5768.377163 C = 6393.131339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.960 3.040 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.239 1.239 7 C -0.541 4.541 8 H 0.029 0.971 9 C -0.009 4.009 10 C 0.164 3.836 11 N -0.730 5.730 12 C 0.717 3.283 13 O -0.644 6.644 14 N -0.674 5.674 15 C 0.132 3.868 16 C -0.108 4.108 17 C 0.090 3.910 18 O -0.594 6.594 19 C 0.106 3.894 20 H 0.269 0.731 21 H 0.036 0.964 22 H 0.035 0.965 23 H 0.041 0.959 24 H 0.040 0.960 25 H 0.407 0.593 26 H 0.105 0.895 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.400 0.600 32 H 0.085 0.915 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.066 -3.010 -1.094 28.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.162 1.162 7 C -0.579 4.579 8 H 0.047 0.953 9 C -0.047 4.047 10 C 0.040 3.960 11 N -0.385 5.385 12 C 0.419 3.581 13 O -0.527 6.527 14 N -0.413 5.413 15 C 0.009 3.991 16 C -0.128 4.128 17 C 0.012 3.988 18 O -0.403 6.403 19 C -0.016 4.016 20 H 0.078 0.922 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.242 0.758 26 H 0.123 0.877 27 H 0.094 0.906 28 H 0.117 0.883 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.250 0.750 32 H 0.103 0.897 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 26.680 -3.577 -0.776 26.930 hybrid contribution -0.038 0.675 -0.288 0.735 sum 26.642 -2.902 -1.064 26.821 Atomic orbital electron populations 1.70075 1.08568 1.28490 1.51846 1.26076 0.95706 1.03855 0.93564 0.85519 0.79566 0.77269 0.79396 1.18830 1.21058 1.16227 1.21235 0.91435 0.93484 1.51770 0.95275 1.19626 0.94497 0.92622 0.97985 1.20903 0.76935 0.98440 0.99715 1.45095 1.07215 1.07162 1.79028 1.15725 0.80926 0.83873 0.77549 1.90860 1.68260 1.32528 1.61045 1.49284 1.01202 1.13145 1.77718 1.23192 0.81807 0.92186 1.01870 1.22988 0.93307 0.95009 1.01449 1.22074 0.88754 0.92737 0.95240 1.86438 1.27886 1.62177 1.63842 1.23616 0.83141 0.92730 1.02078 0.92246 0.94616 0.94632 0.94016 0.94186 0.75767 0.87685 0.90588 0.88293 0.91285 0.91336 0.74998 0.89684 0.87559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.95 13.96 21.45 0.30 -59.65 16 2 C 0.01 0.30 5.47 84.66 0.46 0.77 16 3 Si 0.96 42.94 27.47 68.60 1.88 44.82 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.24 -9.58 6.54 99.48 0.65 -8.93 16 7 C -0.54 -31.68 9.66 25.60 0.25 -31.43 16 8 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 9 C -0.01 -0.44 4.15 29.85 0.12 -0.32 16 10 C 0.16 7.23 5.61 86.38 0.48 7.72 16 11 N -0.73 -26.02 5.56 -478.54 -2.66 -28.68 16 12 C 0.72 26.44 8.76 179.05 1.57 28.01 16 13 O -0.64 -30.01 17.07 -3.98 -0.07 -30.08 16 14 N -0.67 -17.36 3.62 -853.71 -3.09 -20.44 16 15 C 0.13 2.35 8.40 86.49 0.73 3.08 16 16 C -0.11 -1.49 4.19 -10.13 -0.04 -1.53 16 17 C 0.09 0.73 6.89 71.98 0.50 1.23 16 18 O -0.59 -6.28 13.66 -148.98 -2.03 -8.31 16 19 C 0.11 1.73 8.02 86.42 0.69 2.43 16 20 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 21 H 0.04 1.56 7.20 -2.39 -0.02 1.55 16 22 H 0.04 1.53 7.57 -2.38 -0.02 1.51 16 23 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 25 H 0.41 11.75 8.09 -92.70 -0.75 11.00 16 26 H 0.11 1.40 8.10 -2.39 -0.02 1.38 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.07 0.36 7.88 -2.39 -0.02 0.34 16 31 H 0.40 0.59 9.12 -74.06 -0.68 -0.09 16 32 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.11 1.30 7.92 -2.39 -0.02 1.28 16 Total: -1.00 -80.10 284.27 -1.27 -81.37 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -0.36 Total: 11.01 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 4.76 Total: 9.95 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -5.45 Total: -108.77 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -2.10 Total: -38.39 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.88 Total: 44.82 kcal Total: -80.10 -1.27 -81.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116760249.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.016 kcal (2) G-P(sol) polarization free energy of solvation -80.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds