Wall clock time and date at job start Mon Mar 30 2020 03:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99658 * 2 1 4 4 C 1.50701 * 109.46992 * 90.00121 * 3 2 1 5 5 H 1.07998 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99861 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47294 * 60.00559 * 8 6 4 10 10 H 1.48503 * 109.46954 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47431 * 300.00157 * 8 6 4 12 12 C 1.34775 * 120.00005 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99996 * 179.97438 * 12 2 1 14 14 C 1.50698 * 120.00318 * 0.02562 * 12 2 1 15 15 H 1.08998 * 110.36638 * 42.34580 * 14 12 2 16 16 C 1.54384 * 110.40863 * 280.00121 * 14 12 2 17 17 C 1.54264 * 105.05814 * 217.36876 * 16 14 12 18 18 H 1.08993 * 110.32393 * 118.89104 * 17 16 14 19 19 O 1.42901 * 110.32102 * 240.99931 * 17 16 14 20 20 C 1.54381 * 105.05998 * 359.97438 * 17 16 14 21 21 N 1.48553 * 110.41577 * 164.82609 * 14 12 2 22 22 H 1.08996 * 109.47461 * 90.00011 * 1 2 3 23 23 H 1.08998 * 109.46888 * 209.99779 * 1 2 3 24 24 H 1.08994 * 109.47490 * 329.99842 * 1 2 3 25 25 H 1.09002 * 109.47391 * 330.00112 * 3 2 1 26 26 H 1.09001 * 109.46813 * 210.00168 * 3 2 1 27 27 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 28 28 H 1.08997 * 110.32378 * 336.25949 * 16 14 12 29 29 H 1.08997 * 110.32890 * 98.37295 * 16 14 12 30 30 H 0.96702 * 113.99816 * 179.97438 * 19 17 16 31 31 H 1.09003 * 110.40935 * 142.62910 * 20 17 16 32 32 H 1.08990 * 110.41603 * 265.07833 * 20 17 16 33 33 H 1.00908 * 111.00242 * 277.81768 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0981 1.0958 2.2417 6 6 3.1268 2.8775 1.6728 7 7 3.5540 3.6176 0.6732 8 14 3.4387 3.4163 3.4339 9 1 4.2413 2.3811 4.1336 10 1 4.1810 4.7025 3.4340 11 1 2.1414 3.5941 4.1344 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3855 -2.4723 -0.0017 15 1 0.5420 -2.4228 -0.6903 16 6 0.8981 -2.8139 1.4228 17 6 1.0502 -4.3444 1.5422 18 1 1.7455 -4.5943 2.3435 19 8 -0.2208 -4.9522 1.7813 20 6 1.6160 -4.7988 0.1796 21 7 2.2902 -3.5926 -0.3665 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 1.6083 2.0284 -0.5138 26 1 3.1498 1.1384 -0.5139 27 1 4.0308 4.4436 0.8505 28 1 1.5188 -2.3127 2.1656 29 1 -0.1457 -2.5250 1.5454 30 1 -0.1868 -5.9150 1.8649 31 1 2.3351 -5.6064 0.3168 32 1 0.8088 -5.1154 -0.4807 33 1 2.3967 -3.6602 -1.3677 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020434569.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:34 Heat of formation + Delta-G solvation = -103.798242 kcal Electronic energy + Delta-G solvation = -16320.086530 eV Core-core repulsion = 13572.757289 eV Total energy + Delta-G solvation = -2747.329242 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.13105 -39.20540 -36.63878 -36.26959 -34.71896 -31.26035 -30.14070 -29.01941 -27.32188 -25.29233 -23.06512 -21.92525 -20.00172 -18.86395 -18.66740 -17.84551 -17.56131 -16.86059 -16.07997 -16.00457 -15.27858 -14.79712 -14.47976 -14.16540 -14.11741 -13.86701 -13.65462 -13.46734 -13.18017 -12.89714 -12.76716 -12.67329 -12.49916 -12.18545 -11.80455 -11.68668 -10.98035 -10.64798 -10.62136 -9.58595 -9.41649 -8.22737 -6.37826 1.35834 1.40496 1.47751 1.78506 2.22173 2.41015 3.06059 3.06667 3.45676 3.52400 3.63738 3.88406 4.03704 4.16790 4.36685 4.46133 4.65465 4.68672 4.78494 4.87254 4.93413 4.98686 5.02174 5.21025 5.53148 5.59082 5.84965 6.05719 6.22884 6.69590 6.78937 6.89351 7.28032 7.50472 8.84224 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.036331 B = 0.006756 C = 0.006442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.496217 B = 4143.593454 C = 4345.617952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.611 5.611 3 C 0.259 3.741 4 C -0.544 4.544 5 H 0.052 0.948 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.968 3.032 9 H -0.278 1.278 10 H -0.277 1.277 11 H -0.259 1.259 12 C 0.501 3.499 13 O -0.580 6.580 14 C 0.064 3.936 15 H 0.098 0.902 16 C -0.109 4.109 17 C 0.108 3.892 18 H 0.073 0.927 19 O -0.571 6.571 20 C 0.013 3.987 21 N -0.662 5.662 22 H 0.071 0.929 23 H 0.088 0.912 24 H 0.069 0.931 25 H 0.025 0.975 26 H -0.003 1.003 27 H 0.268 0.732 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.400 0.600 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.495 -16.605 -0.107 19.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.343 5.343 3 C 0.138 3.862 4 C -0.583 4.583 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.204 1.204 10 H -0.202 1.202 11 H -0.184 1.184 12 C 0.289 3.711 13 O -0.459 6.459 14 C -0.049 4.049 15 H 0.115 0.885 16 C -0.147 4.147 17 C 0.048 3.952 18 H 0.091 0.909 19 O -0.380 6.380 20 C -0.116 4.116 21 N -0.294 5.294 22 H 0.090 0.910 23 H 0.106 0.894 24 H 0.087 0.913 25 H 0.043 0.957 26 H 0.015 0.985 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.121 0.879 30 H 0.250 0.750 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.477 -15.723 0.341 18.361 hybrid contribution 0.075 0.165 -0.005 0.181 sum -9.402 -15.557 0.336 18.181 Atomic orbital electron populations 1.21973 0.78131 1.03926 1.02585 1.48176 1.08259 1.06290 1.71562 1.18756 0.91063 0.80315 0.96071 1.21679 1.37006 1.06598 0.93021 0.92928 1.25874 0.94834 0.96388 1.02082 1.70044 1.38847 1.14804 1.33118 0.85471 0.78896 0.77381 0.79086 1.20402 1.20156 1.18363 1.21059 0.87801 0.85937 0.76304 1.90632 1.16388 1.87782 1.51075 1.22339 0.94002 0.89283 0.99311 0.88491 1.22216 1.02702 0.95810 0.93951 1.22332 0.85071 0.91528 0.96276 0.90896 1.86502 1.29464 1.27118 1.94883 1.23724 0.98592 0.93210 0.96032 1.63273 1.44934 1.01753 1.19439 0.91045 0.89384 0.91257 0.95675 0.98529 0.92349 0.92293 0.87910 0.74971 0.87942 0.91051 0.83399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.37 9.95 127.77 1.27 3.64 16 2 N -0.61 -26.96 2.86 -851.14 -2.43 -29.39 16 3 C 0.26 14.48 5.16 85.63 0.44 14.92 16 4 C -0.54 -32.29 9.39 25.60 0.24 -32.05 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.42 5.46 84.66 0.46 0.89 16 7 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 8 Si 0.97 45.78 29.54 68.60 2.03 47.81 16 9 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 12 C 0.50 22.00 6.86 87.66 0.60 22.60 16 13 O -0.58 -31.96 16.14 -3.05 -0.05 -32.01 16 14 C 0.06 1.93 2.60 44.32 0.12 2.05 16 15 H 0.10 2.36 7.39 -2.39 -0.02 2.34 16 16 C -0.11 -2.98 5.74 31.49 0.18 -2.80 16 17 C 0.11 2.25 4.42 31.49 0.14 2.38 16 18 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 19 O -0.57 -9.81 13.27 -148.98 -1.98 -11.79 16 20 C 0.01 0.25 7.21 86.45 0.62 0.88 16 21 N -0.66 -18.57 6.86 -482.76 -3.31 -21.88 16 22 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.09 2.19 5.11 -2.39 -0.01 2.18 16 24 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 25 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 26 H 0.00 -0.22 7.42 -2.39 -0.02 -0.24 16 27 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 28 H 0.06 1.97 7.85 -2.39 -0.02 1.95 16 29 H 0.10 2.48 6.85 -2.39 -0.02 2.46 16 30 H 0.40 2.91 9.12 -74.06 -0.68 2.23 16 31 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 1.07 8.08 -2.39 -0.02 1.05 16 33 H 0.35 8.72 8.92 -89.69 -0.80 7.92 16 Total: -1.00 -78.96 277.50 -1.73 -80.68 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -0.35 Total: 11.05 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 4.08 Total: 12.51 kcal Atomic # 7 Polarization: -102.79 SS G_CDS: -5.46 Total: -108.25 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -2.03 Total: -43.80 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -78.96 -1.73 -80.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020434569.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.114 kcal (2) G-P(sol) polarization free energy of solvation -78.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds