Wall clock time and date at job start Mon Mar 30 2020 03:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 120.00612 * 2 1 4 4 C 1.50701 * 109.47260 * 270.00459 * 3 2 1 5 5 H 1.08002 * 119.99761 * 359.97438 * 4 3 2 6 6 C 1.37871 * 119.99694 * 180.27562 * 4 3 2 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 3 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 3 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 C 1.34779 * 119.99637 * 180.02562 * 2 1 3 13 13 O 1.21287 * 120.00127 * 180.02562 * 12 2 1 14 14 C 1.50703 * 120.00320 * 359.97438 * 12 2 1 15 15 H 1.09001 * 109.90422 * 319.30223 * 14 12 2 16 16 C 1.53994 * 109.91658 * 80.40374 * 14 12 2 17 17 C 1.54597 * 105.13607 * 120.57958 * 16 14 12 18 18 H 1.09006 * 110.72365 * 263.41938 * 17 16 14 19 19 O 1.42897 * 110.71785 * 140.31931 * 17 16 14 20 20 C 1.54931 * 102.92434 * 21.96104 * 17 16 14 21 21 N 1.47900 * 109.91959 * 198.20130 * 14 12 2 22 22 H 1.09005 * 109.46868 * 89.99704 * 1 2 3 23 23 H 1.08999 * 109.47518 * 209.99467 * 1 2 3 24 24 H 1.08995 * 109.46848 * 330.00123 * 1 2 3 25 25 H 1.09000 * 109.47197 * 149.99465 * 3 2 1 26 26 H 1.09007 * 109.46342 * 30.00037 * 3 2 1 27 27 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 28 28 H 1.08998 * 110.31077 * 239.49841 * 16 14 12 29 29 H 1.09003 * 110.30876 * 1.56640 * 16 14 12 30 30 H 0.96706 * 113.99560 * 180.02562 * 19 17 16 31 31 H 1.09001 * 110.66997 * 81.01435 * 20 17 16 32 32 H 1.09000 * 110.66724 * 204.15141 * 20 17 16 33 33 H 1.00902 * 111.00125 * 335.83177 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1316 2.8747 -1.6726 7 7 3.5589 3.6149 -0.6730 8 14 3.4497 3.4101 -3.4338 9 1 2.8715 2.4103 -4.3672 10 1 2.8177 4.7328 -3.6710 11 1 4.9132 3.5126 -3.6634 12 6 2.1388 -1.1673 -0.0005 13 8 3.3517 -1.1674 -0.0001 14 6 1.3853 -2.4724 -0.0005 15 1 0.5271 -2.4054 0.6681 16 6 0.9134 -2.8057 -1.4280 17 6 1.5672 -4.1662 -1.7619 18 1 2.4868 -4.0232 -2.3296 19 8 0.6570 -5.0020 -2.4795 20 6 1.8687 -4.7586 -0.3625 21 7 2.2774 -3.5693 0.4332 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5137 24 1 -0.3633 0.8900 0.5138 25 1 3.1500 1.1382 0.5139 26 1 1.6085 2.0283 0.5139 27 1 4.0396 4.4385 -0.8503 28 1 -0.1729 -2.8906 -1.4572 29 1 1.2513 -2.0402 -2.1266 30 1 1.0187 -5.8679 -2.7129 31 1 0.9746 -5.2141 0.0633 32 1 2.6815 -5.4827 -0.4182 33 1 3.2447 -3.3371 0.2642 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020434572.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:39 Heat of formation + Delta-G solvation = -106.281033 kcal Electronic energy + Delta-G solvation = -16370.461172 eV Core-core repulsion = 13623.024268 eV Total energy + Delta-G solvation = -2747.436904 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.36842 -39.19258 -36.78410 -36.29281 -34.76337 -31.14521 -30.00935 -29.01624 -27.35650 -25.29773 -23.05800 -22.16787 -20.13924 -18.86022 -18.70599 -18.02938 -17.53288 -16.69081 -16.12954 -15.79192 -15.56644 -15.03385 -14.64840 -14.42472 -13.91080 -13.74122 -13.58383 -13.47689 -13.11467 -12.88210 -12.83516 -12.69400 -12.49871 -12.24593 -11.80904 -11.71431 -11.21619 -10.67872 -10.65917 -9.72640 -9.49762 -8.25809 -6.40712 1.34083 1.36130 1.47841 1.66490 2.20909 2.38967 2.95798 3.03824 3.39419 3.45405 3.63853 3.82110 4.11492 4.19908 4.35757 4.46161 4.61530 4.70463 4.78685 4.82263 4.92151 4.98151 5.05559 5.17248 5.50892 5.55462 5.78517 6.01728 6.13894 6.63380 6.71341 6.83384 7.21776 7.36916 8.81765 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.033456 B = 0.007069 C = 0.006586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.709498 B = 3959.888864 C = 4250.463309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.603 5.603 3 C 0.257 3.743 4 C -0.543 4.543 5 H 0.052 0.948 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.968 3.032 9 H -0.268 1.268 10 H -0.268 1.268 11 H -0.281 1.281 12 C 0.494 3.506 13 O -0.592 6.592 14 C 0.068 3.932 15 H 0.131 0.869 16 C -0.131 4.131 17 C 0.075 3.925 18 H 0.059 0.941 19 O -0.568 6.568 20 C 0.020 3.980 21 N -0.663 5.663 22 H 0.059 0.941 23 H 0.099 0.901 24 H 0.075 0.925 25 H -0.001 1.001 26 H 0.027 0.973 27 H 0.268 0.732 28 H 0.108 0.892 29 H 0.054 0.946 30 H 0.399 0.601 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.384 -15.639 -1.434 17.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.333 5.333 3 C 0.135 3.865 4 C -0.581 4.581 5 H 0.070 0.930 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.792 3.208 9 H -0.192 1.192 10 H -0.193 1.193 11 H -0.207 1.207 12 C 0.282 3.718 13 O -0.473 6.473 14 C -0.045 4.045 15 H 0.148 0.852 16 C -0.170 4.170 17 C 0.014 3.986 18 H 0.077 0.923 19 O -0.375 6.375 20 C -0.109 4.109 21 N -0.296 5.296 22 H 0.078 0.922 23 H 0.117 0.883 24 H 0.094 0.906 25 H 0.017 0.983 26 H 0.045 0.955 27 H 0.077 0.923 28 H 0.126 0.874 29 H 0.073 0.927 30 H 0.250 0.750 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.420 -15.102 -0.674 17.304 hybrid contribution 1.282 0.664 -1.643 2.187 sum -7.138 -14.438 -2.317 16.272 Atomic orbital electron populations 1.22011 0.77769 1.04184 1.02623 1.48118 1.08495 1.06297 1.70417 1.18841 0.91230 0.80212 0.96170 1.21697 1.36751 1.06756 0.92928 0.92999 1.25857 0.94868 0.96388 1.02007 1.70050 1.38744 1.14958 1.32985 0.85367 0.77930 0.78462 0.79047 1.19249 1.19256 1.20653 1.21257 0.87858 0.86718 0.75954 1.90608 1.16260 1.87633 1.52793 1.22403 0.96876 0.87925 0.97267 0.85157 1.22571 1.03602 0.96223 0.94627 1.23264 0.91711 0.90411 0.93193 0.92346 1.86453 1.42517 1.31685 1.76878 1.23978 1.03336 0.93298 0.90308 1.63049 1.08253 1.03181 1.55074 0.92189 0.88317 0.90640 0.98287 0.95489 0.92308 0.87385 0.92716 0.75007 0.87902 0.88147 0.83628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.30 10.10 127.77 1.29 3.59 16 2 N -0.60 -25.95 2.86 -851.12 -2.43 -28.38 16 3 C 0.26 14.04 5.20 85.63 0.45 14.49 16 4 C -0.54 -31.62 9.39 25.60 0.24 -31.38 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 6 C 0.01 0.46 5.46 84.65 0.46 0.92 16 7 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 8 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 C 0.49 20.87 6.71 87.66 0.59 21.46 16 13 O -0.59 -30.66 15.17 -3.05 -0.05 -30.70 16 14 C 0.07 2.04 3.02 44.31 0.13 2.17 16 15 H 0.13 3.24 6.37 -2.39 -0.02 3.22 16 16 C -0.13 -3.52 6.08 31.47 0.19 -3.33 16 17 C 0.08 1.68 4.44 31.80 0.14 1.82 16 18 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 19 O -0.57 -10.85 13.40 -148.98 -2.00 -12.85 16 20 C 0.02 0.40 7.27 86.59 0.63 1.03 16 21 N -0.66 -18.77 7.41 -483.35 -3.58 -22.35 16 22 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 23 H 0.10 2.18 5.97 -2.39 -0.01 2.16 16 24 H 0.07 2.20 7.89 -2.39 -0.02 2.18 16 25 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 26 H 0.03 1.49 7.89 -2.38 -0.02 1.47 16 27 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 28 H 0.11 2.47 8.07 -2.39 -0.02 2.45 16 29 H 0.05 1.78 7.68 -2.39 -0.02 1.76 16 30 H 0.40 3.71 9.12 -74.05 -0.68 3.03 16 31 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.34 11.31 7.32 -89.69 -0.66 10.65 16 Total: -1.00 -74.73 277.08 -1.83 -76.56 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -0.20 Total: 15.88 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 4.12 Total: 10.79 kcal Atomic # 7 Polarization: -101.17 SS G_CDS: -5.73 Total: -106.90 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: -2.04 Total: -43.55 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -74.73 -1.83 -76.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020434572.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.726 kcal (2) G-P(sol) polarization free energy of solvation -74.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds