Wall clock time and date at job start Mon Mar 30 2020 03:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 H 1.08994 * 110.62842 * 333.10754 * 3 2 1 5 5 C 1.54320 * 110.70452 * 96.40218 * 3 2 1 6 6 N 1.47433 * 107.23623 * 140.66525 * 5 3 2 7 7 C 1.47847 * 108.56499 * 0.98894 * 6 5 3 8 8 H 1.09000 * 110.37646 * 94.73400 * 7 6 5 9 9 C 1.50706 * 110.47116 * 217.02514 * 7 6 5 10 10 O 1.21277 * 119.99301 * 15.43044 * 9 7 6 11 11 N 1.34768 * 120.00219 * 195.42696 * 9 7 6 12 12 C 1.46500 * 119.99807 * 179.97438 * 11 9 7 13 13 C 1.50702 * 109.47185 * 180.02562 * 12 11 9 14 14 H 1.08009 * 119.99959 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00486 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99762 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00498 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46813 * 59.99905 * 17 15 13 19 19 H 1.48492 * 109.47545 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47398 * 300.00496 * 17 15 13 21 21 C 1.54901 * 104.79871 * 335.90483 * 7 6 5 22 22 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 23 23 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 24 24 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.88679 * 260.07543 * 5 3 2 26 26 H 1.09005 * 109.88650 * 21.25596 * 5 3 2 27 27 H 1.00901 * 111.00303 * 238.72726 * 6 5 3 28 28 H 0.97003 * 120.00483 * 0.02562 * 11 9 7 29 29 H 1.09001 * 109.47553 * 300.00323 * 12 11 9 30 30 H 1.08996 * 109.47033 * 60.00945 * 12 11 9 31 31 H 0.96996 * 120.00147 * 179.97438 * 16 15 13 32 32 H 1.08998 * 110.99189 * 278.98115 * 21 7 6 33 33 H 1.09000 * 111.03074 * 155.17266 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3354 2.0263 -0.4614 5 6 2.3793 1.7384 1.4345 6 7 3.6692 2.4483 1.3585 7 6 4.0989 2.4936 -0.0555 8 1 3.7858 3.4299 -0.5175 9 6 5.5940 2.3338 -0.1574 10 8 6.2254 1.9191 0.7914 11 7 6.2292 2.6515 -1.3027 12 6 7.6826 2.4967 -1.4015 13 6 8.1406 2.9177 -2.7741 14 1 7.4209 3.2662 -3.5002 15 6 9.4781 2.8580 -3.1032 16 7 10.3544 2.4331 -2.2192 17 14 10.0457 3.3792 -4.8048 18 1 9.6830 4.8010 -5.0336 19 1 11.5189 3.2223 -4.9050 20 1 9.3861 2.5294 -5.8285 21 6 3.3815 1.2954 -0.7256 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6122 2.4044 1.8297 26 1 2.4762 0.8605 2.0734 27 1 4.3648 1.9971 1.9334 28 1 5.7242 2.9835 -2.0615 29 1 8.1665 3.1208 -0.6501 30 1 7.9490 1.4532 -1.2335 31 1 11.2954 2.3908 -2.4508 32 1 3.9164 0.3647 -0.5365 33 1 3.2582 1.4620 -1.7957 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040631495.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:59 Heat of formation + Delta-G solvation = -112.649882 kcal Electronic energy + Delta-G solvation = -15758.764871 eV Core-core repulsion = 13011.051794 eV Total energy + Delta-G solvation = -2747.713078 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.24119 -39.51329 -37.23496 -36.17126 -34.40291 -31.06772 -30.38752 -28.86019 -27.16192 -25.16570 -23.21936 -22.01846 -21.26120 -19.43637 -18.12740 -17.52314 -17.21019 -16.75739 -16.37370 -15.99314 -15.81696 -15.22554 -15.07659 -14.64778 -14.28199 -14.05144 -13.87782 -13.10854 -12.97784 -12.77496 -12.67769 -12.64165 -12.49402 -12.23988 -11.82953 -11.52475 -10.86669 -10.80160 -10.68886 -9.91283 -9.56953 -8.29297 -6.46361 1.43885 1.47944 1.56190 1.58229 2.25969 2.46867 2.69795 3.05756 3.30924 3.46522 3.67503 3.93107 4.00328 4.27103 4.29196 4.53600 4.57929 4.64944 4.80621 4.88981 4.91554 4.93804 5.08370 5.21422 5.44357 5.60936 5.71044 5.82917 6.09582 6.27631 6.63604 6.81911 7.21672 7.39679 8.82788 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.048191 B = 0.004981 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.876958 B = 5619.478903 C = 5968.170998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.405 6.405 3 C 0.078 3.922 4 H 0.107 0.893 5 C 0.026 3.974 6 N -0.673 5.673 7 C 0.071 3.929 8 H 0.138 0.862 9 C 0.495 3.505 10 O -0.598 6.598 11 N -0.698 5.698 12 C 0.265 3.735 13 C -0.557 4.557 14 H 0.086 0.914 15 C 0.004 3.996 16 N -0.932 5.932 17 Si 0.986 3.014 18 H -0.261 1.261 19 H -0.286 1.286 20 H -0.262 1.262 21 C -0.137 4.137 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.094 0.906 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.345 0.655 28 H 0.411 0.589 29 H -0.011 1.011 30 H -0.013 1.013 31 H 0.269 0.731 32 H 0.056 0.944 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.727 -0.343 0.094 20.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.323 6.323 3 C 0.019 3.981 4 H 0.125 0.875 5 C -0.104 4.104 6 N -0.306 5.306 7 C -0.042 4.042 8 H 0.156 0.844 9 C 0.282 3.718 10 O -0.480 6.480 11 N -0.347 5.347 12 C 0.142 3.858 13 C -0.595 4.595 14 H 0.104 0.896 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.809 3.191 18 H -0.186 1.186 19 H -0.212 1.212 20 H -0.186 1.186 21 C -0.177 4.177 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.112 0.888 25 H 0.119 0.881 26 H 0.075 0.925 27 H 0.164 0.836 28 H 0.247 0.753 29 H 0.006 0.994 30 H 0.005 0.995 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -20.248 -0.184 0.808 20.265 hybrid contribution 0.899 -0.621 -0.746 1.323 sum -19.349 -0.805 0.062 19.366 Atomic orbital electron populations 1.23036 0.79025 1.03912 1.01332 1.87925 1.21967 1.27472 1.94979 1.23395 0.94302 0.85483 0.94941 0.87475 1.23251 0.91945 0.97615 0.97545 1.62000 1.06143 1.55942 1.06527 1.22496 0.88508 1.01502 0.91671 0.84448 1.21326 0.91208 0.76851 0.82460 1.90616 1.69306 1.48850 1.39256 1.46120 1.09437 1.64372 1.14770 1.18582 0.76295 0.94293 0.96615 1.21590 0.94038 1.45709 0.98151 0.89586 1.26077 0.96524 0.94499 1.02468 1.70134 1.03034 1.46673 1.37191 0.85193 0.76866 0.79359 0.77719 1.18562 1.21187 1.18603 1.23121 0.95299 0.97098 1.02145 0.92715 0.92454 0.88773 0.88088 0.92476 0.83561 0.75304 0.99351 0.99458 0.92236 0.92505 0.87054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.85 113.37 1.23 1.53 16 2 O -0.40 -8.76 10.43 -148.98 -1.55 -10.31 16 3 C 0.08 1.55 3.44 31.78 0.11 1.66 16 4 H 0.11 1.53 7.82 -2.39 -0.02 1.51 16 5 C 0.03 0.57 7.36 86.65 0.64 1.20 16 6 N -0.67 -19.18 7.30 -486.28 -3.55 -22.73 16 7 C 0.07 2.01 3.80 44.64 0.17 2.18 16 8 H 0.14 3.11 8.14 -2.39 -0.02 3.09 16 9 C 0.50 20.06 7.13 87.66 0.63 20.68 16 10 O -0.60 -29.98 15.58 -3.02 -0.05 -30.03 16 11 N -0.70 -29.37 5.55 -466.80 -2.59 -31.96 16 12 C 0.26 14.60 5.43 85.63 0.46 15.07 16 13 C -0.56 -30.16 9.28 25.60 0.24 -29.92 16 14 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 15 C 0.00 0.22 5.46 84.65 0.46 0.68 16 16 N -0.93 -56.38 13.29 21.45 0.28 -56.09 16 17 Si 0.99 42.05 29.54 68.60 2.03 44.08 16 18 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 19 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 21 C -0.14 -3.37 6.20 31.98 0.20 -3.17 16 22 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 23 H 0.06 0.59 8.11 -2.38 -0.02 0.57 16 24 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 26 H 0.06 1.33 8.06 -2.38 -0.02 1.31 16 27 H 0.35 11.63 7.28 -89.69 -0.65 10.97 16 28 H 0.41 13.98 8.32 -92.71 -0.77 13.21 16 29 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 30 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 31 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 32 H 0.06 1.74 8.05 -2.39 -0.02 1.72 16 33 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -71.70 282.50 -1.60 -73.31 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: -0.31 Total: 23.84 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 4.13 Total: 9.90 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -5.85 Total: -110.79 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -1.60 Total: -40.34 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -71.70 -1.60 -73.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040631495.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.344 kcal (2) G-P(sol) polarization free energy of solvation -71.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds