Wall clock time and date at job start Mon Mar 30 2020 02:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46934 * 2 1 4 4 C 1.50703 * 109.47122 * 119.99590 * 2 1 3 5 5 H 1.08002 * 119.99685 * 119.99733 * 4 2 1 6 6 C 1.37877 * 120.00216 * 300.00546 * 4 2 1 7 7 N 1.31516 * 120.00069 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99806 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46845 * 90.00621 * 8 6 4 10 10 H 1.48503 * 109.47399 * 210.00111 * 8 6 4 11 11 H 1.48498 * 109.47295 * 330.00717 * 8 6 4 12 12 N 1.46500 * 109.47476 * 239.99811 * 2 1 3 13 13 C 1.34774 * 119.99709 * 84.99803 * 12 2 1 14 14 O 1.21283 * 120.00230 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99634 * 180.02562 * 13 12 2 16 16 H 1.08997 * 109.50778 * 55.09098 * 15 13 12 17 17 C 1.53088 * 109.50857 * 295.00053 * 15 13 12 18 18 N 1.47018 * 109.26265 * 183.21620 * 17 15 13 19 19 C 1.47012 * 110.74894 * 58.61372 * 18 17 15 20 20 C 1.53093 * 109.26086 * 301.39116 * 19 18 17 21 21 O 1.43011 * 109.50505 * 175.21885 * 15 13 12 22 22 H 1.08998 * 109.47451 * 300.00317 * 1 2 3 23 23 H 1.09001 * 109.46962 * 60.00003 * 1 2 3 24 24 H 1.08996 * 109.47365 * 180.02562 * 1 2 3 25 25 H 0.97000 * 119.99667 * 179.97438 * 7 6 4 26 26 H 0.96997 * 119.99804 * 265.00302 * 12 2 1 27 27 H 1.08999 * 109.51034 * 303.15348 * 17 15 13 28 28 H 1.09010 * 109.50877 * 63.28088 * 17 15 13 29 29 H 1.00898 * 110.99447 * 294.84358 * 18 17 15 30 30 H 1.09003 * 109.50361 * 61.32174 * 19 18 17 31 31 H 1.08996 * 109.50751 * 181.44959 * 19 18 17 32 32 H 1.09001 * 109.50754 * 176.78462 * 20 19 18 33 33 H 1.09006 * 109.50531 * 296.86505 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8022 0.8743 2.6993 10 1 0.9769 1.9955 3.9070 11 1 0.8488 2.1772 1.4922 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6490 -0.7289 -3.5876 16 1 2.0270 -1.6025 -3.7826 17 6 4.0977 -1.1718 -3.3671 18 7 4.6068 -1.7955 -4.5973 19 6 4.5330 -0.8567 -5.7262 20 6 3.0799 -0.4169 -5.9231 21 8 2.5923 0.1583 -4.7079 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.9031 -0.5278 4.4376 26 1 2.2491 -1.6318 -1.1525 27 1 4.7096 -0.3047 -3.1185 28 1 4.1377 -1.8925 -2.5502 29 1 4.1086 -2.6484 -4.8031 30 1 5.1518 0.0155 -5.5153 31 1 4.8907 -1.3472 -6.6314 32 1 3.0285 0.3227 -6.7221 33 1 2.4706 -1.2812 -6.1875 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050392570.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:31 Heat of formation + Delta-G solvation = -73.159016 kcal Electronic energy + Delta-G solvation = -16338.828773 eV Core-core repulsion = 13592.828148 eV Total energy + Delta-G solvation = -2746.000625 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.13473 -38.32940 -35.10896 -34.53359 -32.56316 -31.64045 -29.68641 -26.52557 -25.20039 -24.38676 -21.93998 -21.00855 -19.68672 -17.65428 -16.53515 -16.50542 -15.95248 -15.75996 -15.25605 -14.95723 -14.52222 -13.83877 -13.51779 -12.94336 -12.76787 -12.68415 -12.21949 -12.02723 -11.78497 -11.53851 -11.25142 -11.23524 -10.83461 -10.41690 -10.20337 -9.71347 -9.25863 -9.21338 -8.77800 -8.43136 -8.19769 -6.22571 -4.25432 3.10267 3.21716 3.23124 3.35275 3.40322 3.93468 4.24615 4.30840 4.56731 4.84346 4.88167 4.96692 5.05322 5.12489 5.30243 5.39362 5.46340 5.69749 5.87569 6.28889 6.35306 6.53537 6.56919 6.82290 6.93290 7.03762 7.18067 7.24916 7.48392 8.11471 8.47107 8.73343 8.87288 9.38030 10.89451 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.050832 B = 0.006514 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.704922 B = 4297.622601 C = 4640.414250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.238 3.762 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.697 5.697 13 C 0.512 3.488 14 O -0.534 6.534 15 C 0.035 3.965 16 H 0.079 0.921 17 C 0.032 3.968 18 N -0.679 5.679 19 C 0.018 3.982 20 C 0.020 3.980 21 O -0.351 6.351 22 H 0.048 0.952 23 H 0.036 0.964 24 H 0.053 0.947 25 H 0.268 0.732 26 H 0.395 0.605 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.341 0.659 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.880 -3.231 -16.063 16.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.135 3.865 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.714 3.286 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.186 1.186 12 N -0.347 5.347 13 C 0.295 3.705 14 O -0.410 6.410 15 C -0.028 4.028 16 H 0.096 0.904 17 C -0.098 4.098 18 N -0.307 5.307 19 C -0.112 4.112 20 C -0.059 4.059 21 O -0.268 6.268 22 H 0.066 0.934 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.228 0.772 27 H 0.109 0.891 28 H 0.116 0.884 29 H 0.159 0.841 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.288 -2.047 -15.721 16.018 hybrid contribution -1.435 -0.030 0.018 1.435 sum 0.853 -2.076 -15.703 15.862 Atomic orbital electron populations 1.22459 0.99258 1.00904 0.99404 1.19129 0.90166 0.94732 0.82491 0.93277 1.21016 1.33374 1.14483 0.88446 0.90101 1.24821 0.95467 0.96688 0.95507 1.69866 1.44844 1.40071 0.98056 0.86884 0.80525 0.83634 0.77512 1.20285 1.22094 1.18638 1.46103 1.65456 1.13793 1.09391 1.19862 0.79051 0.87536 0.84040 1.90680 1.49843 1.15785 1.84694 1.22726 0.98520 0.93501 0.88094 0.90357 1.22648 0.92343 1.01378 0.93412 1.60876 1.59488 1.07059 1.03278 1.22716 0.96159 0.97652 0.94674 1.23347 0.95151 0.99592 0.87821 1.88220 1.84298 1.38226 1.16105 0.93352 0.94526 0.92758 0.92246 0.77169 0.89054 0.88443 0.84124 0.89616 0.89494 0.88025 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 8.96 37.16 0.33 -3.31 16 2 C 0.24 5.68 2.15 -69.08 -0.15 5.53 16 3 H 0.05 1.30 6.63 -51.93 -0.34 0.96 16 4 C -0.54 -14.32 9.31 -34.44 -0.32 -14.64 16 5 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 7 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 8 Si 0.88 21.78 24.37 -169.99 -4.14 17.64 16 9 H -0.28 -6.57 6.87 56.52 0.39 -6.18 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.26 -6.44 6.53 56.52 0.37 -6.08 16 12 N -0.70 -13.69 5.03 -54.93 -0.28 -13.96 16 13 C 0.51 10.01 7.15 -10.98 -0.08 9.93 16 14 O -0.53 -12.86 16.17 -14.28 -0.23 -13.09 16 15 C 0.03 0.51 3.21 -27.84 -0.09 0.42 16 16 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 17 C 0.03 0.41 6.00 -3.71 -0.02 0.39 16 18 N -0.68 -7.07 6.93 -113.50 -0.79 -7.86 16 19 C 0.02 0.17 6.76 -3.72 -0.03 0.14 16 20 C 0.02 0.21 7.00 37.21 0.26 0.47 16 21 O -0.35 -5.53 10.01 -55.06 -0.55 -6.08 16 22 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.39 6.60 8.40 -40.82 -0.34 6.26 16 27 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 28 H 0.10 1.13 8.01 -51.92 -0.42 0.72 16 29 H 0.34 2.87 8.89 -39.29 -0.35 2.52 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 269.61 15.07 4.06 4.06 Total: -1.00 -32.82 269.61 -5.94 -38.76 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -4.60 Total: 4.95 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -0.19 Total: 1.03 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.29 Total: -47.28 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.78 Total: -19.17 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.14 Total: 17.64 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.82 -5.94 -38.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392570.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.394 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds