Wall clock time and date at job start Mon Mar 30 2020 03:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99945 * 2 1 4 4 H 1.48491 * 109.47208 * 239.99802 * 3 2 1 5 5 H 1.48499 * 109.46979 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47104 * 119.99942 * 3 2 1 7 7 C 1.37877 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99859 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99987 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47237 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47081 * 180.02562 * 10 9 7 12 12 O 1.42898 * 109.47095 * 180.02562 * 11 10 9 13 13 C 1.42906 * 114.00358 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47498 * 179.97438 * 13 12 11 15 15 C 1.53175 * 109.53913 * 65.44549 * 14 13 12 16 16 C 1.53092 * 109.16179 * 176.85000 * 15 14 13 17 17 O 1.42910 * 109.41107 * 302.39040 * 16 15 14 18 18 C 1.42900 * 114.09727 * 61.16189 * 17 16 15 19 19 C 1.53090 * 109.41229 * 298.83586 * 18 17 16 20 20 H 0.97001 * 120.00296 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.47067 * 59.99890 * 9 7 2 22 22 H 1.09003 * 109.47263 * 300.00341 * 9 7 2 23 23 H 1.08994 * 109.47173 * 60.00371 * 10 9 7 24 24 H 1.09003 * 109.47059 * 300.00204 * 10 9 7 25 25 H 1.08997 * 109.47638 * 60.00003 * 11 10 9 26 26 H 1.09003 * 109.47001 * 299.99824 * 11 10 9 27 27 H 1.09005 * 109.46494 * 59.99732 * 13 12 11 28 28 H 1.09005 * 109.47052 * 300.00223 * 13 12 11 29 29 H 1.08997 * 109.61228 * 305.22844 * 14 13 12 30 30 H 1.09006 * 109.52647 * 296.75300 * 15 14 13 31 31 H 1.08998 * 109.52537 * 56.94192 * 15 14 13 32 32 H 1.08998 * 109.48147 * 182.40843 * 16 15 14 33 33 H 1.08997 * 109.48550 * 62.37144 * 16 15 14 34 34 H 1.09003 * 109.47953 * 178.86010 * 18 17 16 35 35 H 1.08995 * 109.49265 * 58.82602 * 18 17 16 36 36 H 1.09001 * 109.52724 * 297.70937 * 19 18 17 37 37 H 1.09000 * 109.52338 * 177.51272 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 8 2.4089 -6.0731 -0.0006 13 6 1.7944 -7.3633 -0.0005 14 6 2.8773 -8.4441 -0.0005 15 6 3.6637 -8.3814 1.3125 16 6 4.6920 -9.5152 1.3370 17 8 4.0214 -10.7680 1.1848 18 6 3.3081 -10.9021 -0.0462 19 6 2.2242 -9.8240 -0.1263 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5566 -0.8903 22 1 0.6247 -2.5570 0.8897 23 1 2.8719 -3.6043 0.8894 24 1 2.8720 -3.6042 -0.8905 25 1 0.8539 -5.0446 -0.8913 26 1 0.8533 -5.0450 0.8886 27 1 1.1746 -7.4705 -0.8908 28 1 1.1738 -7.4702 0.8893 29 1 3.5546 -8.2834 -0.8392 30 1 4.1771 -7.4225 1.3842 31 1 2.9788 -8.4926 2.1530 32 1 5.2255 -9.5017 2.2874 33 1 5.4010 -9.3809 0.5201 34 1 2.8446 -11.8876 -0.0922 35 1 3.9988 -10.7859 -0.8813 36 1 1.5102 -9.9642 0.6853 37 1 1.7081 -9.8967 -1.0836 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052154322.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:19 Heat of formation + Delta-G solvation = -128.192820 kcal Electronic energy + Delta-G solvation = -15627.978953 eV Core-core repulsion = 12983.132227 eV Total energy + Delta-G solvation = -2644.846727 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.62626 -37.64203 -34.58417 -33.54825 -31.46033 -31.24576 -27.76839 -26.22352 -23.74524 -23.00210 -22.60785 -20.40948 -19.94165 -16.60569 -16.35948 -16.18869 -15.99724 -15.70840 -14.91869 -14.64383 -14.43903 -13.93174 -13.54425 -13.15171 -12.50937 -12.39280 -11.99251 -11.63875 -11.58058 -11.48523 -11.00693 -10.85776 -10.74679 -10.59124 -10.42755 -10.34426 -9.82742 -9.71295 -9.41993 -9.20213 -9.11377 -8.35389 -6.00768 -4.03152 3.34080 3.37914 3.40829 3.67614 3.89181 4.46395 4.54627 4.66064 4.80405 4.83639 5.05898 5.20056 5.26726 5.35087 5.41511 5.44943 5.49165 5.65114 5.66828 5.71523 5.76552 5.86982 5.92527 6.05990 6.20749 6.21225 6.68765 6.72191 6.99625 7.09327 7.57767 7.66375 7.78522 7.98677 8.41678 9.03321 9.60843 11.10783 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.068595 B = 0.003663 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.092696 B = 7642.453848 C = 7912.012043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.107 4.107 11 C 0.063 3.937 12 O -0.391 6.391 13 C 0.067 3.933 14 C -0.088 4.088 15 C -0.148 4.148 16 C 0.060 3.940 17 O -0.387 6.387 18 C 0.063 3.937 19 C -0.150 4.150 20 H 0.261 0.739 21 H 0.017 0.983 22 H 0.017 0.983 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.051 -19.977 0.150 20.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.145 4.145 11 C -0.013 4.013 12 O -0.310 6.310 13 C -0.010 4.010 14 C -0.107 4.107 15 C -0.185 4.185 16 C -0.017 4.017 17 O -0.306 6.306 18 C -0.014 4.014 19 C -0.188 4.188 20 H 0.071 0.929 21 H 0.035 0.965 22 H 0.035 0.965 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.097 -19.967 0.291 20.610 hybrid contribution -0.023 1.207 -0.249 1.233 sum 5.074 -18.760 0.041 19.434 Atomic orbital electron populations 1.69953 1.06085 1.26772 1.50800 1.25029 0.94874 0.99315 0.95274 0.86619 0.79548 0.82939 0.78675 1.20192 1.21281 1.20190 1.21186 0.93101 0.90881 1.50705 0.92575 1.19045 0.93925 0.91084 0.97316 1.21645 0.99636 0.91774 1.01434 1.22775 0.92154 0.86958 0.99407 1.87867 1.34410 1.13381 1.95380 1.22420 0.94744 0.83954 0.99862 1.21165 0.97375 0.93183 0.98935 1.22193 0.98982 0.99793 0.97577 1.22633 0.93866 0.83291 1.01896 1.87914 1.67862 1.35984 1.38796 1.22536 0.93239 0.98874 0.86747 1.22192 0.99012 0.94591 1.03033 0.92914 0.96499 0.96500 0.92623 0.92643 0.93915 0.93907 0.93684 0.93655 0.90276 0.89707 0.91200 0.88867 0.93174 0.88915 0.93175 0.90827 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 10 C -0.11 -2.33 5.52 -26.73 -0.15 -2.48 16 11 C 0.06 1.16 5.94 37.16 0.22 1.38 16 12 O -0.39 -6.63 9.96 -35.23 -0.35 -6.98 16 13 C 0.07 0.88 5.32 37.16 0.20 1.08 16 14 C -0.09 -0.98 2.51 -90.44 -0.23 -1.20 16 15 C -0.15 -1.64 5.29 -26.59 -0.14 -1.78 16 16 C 0.06 0.59 6.84 37.21 0.25 0.84 16 17 O -0.39 -4.26 10.77 -35.23 -0.38 -4.64 16 18 C 0.06 0.55 6.84 37.20 0.25 0.80 16 19 C -0.15 -1.35 5.42 -26.59 -0.14 -1.49 16 20 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 21 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 24 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.03 7.93 -51.93 -0.41 0.62 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 302.36 15.07 4.56 4.56 Total: -1.00 -30.95 302.36 -7.46 -38.40 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -6.72 Total: -5.57 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -0.28 Total: -16.17 kcal Atomic # 7 Polarization: -27.17 SS G_CDS: 0.74 Total: -26.43 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -0.73 Total: -11.62 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.95 -7.46 -38.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052154322.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.790 kcal (2) G-P(sol) polarization free energy of solvation -30.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds