Wall clock time and date at job start Mon Mar 30 2020 03:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99945 * 2 1 4 4 H 1.48491 * 109.47208 * 239.99802 * 3 2 1 5 5 H 1.48499 * 109.46979 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47104 * 119.99942 * 3 2 1 7 7 C 1.37877 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99859 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99987 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47237 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47081 * 180.02562 * 10 9 7 12 12 O 1.42898 * 109.47095 * 180.02562 * 11 10 9 13 13 C 1.42906 * 114.00358 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47498 * 179.97438 * 13 12 11 15 15 C 1.53175 * 109.53913 * 65.44549 * 14 13 12 16 16 C 1.53092 * 109.16179 * 176.85000 * 15 14 13 17 17 O 1.42910 * 109.41107 * 302.39040 * 16 15 14 18 18 C 1.42900 * 114.09727 * 61.16189 * 17 16 15 19 19 C 1.53090 * 109.41229 * 298.83586 * 18 17 16 20 20 H 0.97001 * 120.00296 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.47067 * 59.99890 * 9 7 2 22 22 H 1.09003 * 109.47263 * 300.00341 * 9 7 2 23 23 H 1.08994 * 109.47173 * 60.00371 * 10 9 7 24 24 H 1.09003 * 109.47059 * 300.00204 * 10 9 7 25 25 H 1.08997 * 109.47638 * 60.00003 * 11 10 9 26 26 H 1.09003 * 109.47001 * 299.99824 * 11 10 9 27 27 H 1.09005 * 109.46494 * 59.99732 * 13 12 11 28 28 H 1.09005 * 109.47052 * 300.00223 * 13 12 11 29 29 H 1.08997 * 109.61228 * 305.22844 * 14 13 12 30 30 H 1.09006 * 109.52647 * 296.75300 * 15 14 13 31 31 H 1.08998 * 109.52537 * 56.94192 * 15 14 13 32 32 H 1.08998 * 109.48147 * 182.40843 * 16 15 14 33 33 H 1.08997 * 109.48550 * 62.37144 * 16 15 14 34 34 H 1.09003 * 109.47953 * 178.86010 * 18 17 16 35 35 H 1.08995 * 109.49265 * 58.82602 * 18 17 16 36 36 H 1.09001 * 109.52724 * 297.70937 * 19 18 17 37 37 H 1.09000 * 109.52338 * 177.51272 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 8 2.4089 -6.0731 -0.0006 13 6 1.7944 -7.3633 -0.0005 14 6 2.8773 -8.4441 -0.0005 15 6 3.6637 -8.3814 1.3125 16 6 4.6920 -9.5152 1.3370 17 8 4.0214 -10.7680 1.1848 18 6 3.3081 -10.9021 -0.0462 19 6 2.2242 -9.8240 -0.1263 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5566 -0.8903 22 1 0.6247 -2.5570 0.8897 23 1 2.8719 -3.6043 0.8894 24 1 2.8720 -3.6042 -0.8905 25 1 0.8539 -5.0446 -0.8913 26 1 0.8533 -5.0450 0.8886 27 1 1.1746 -7.4705 -0.8908 28 1 1.1738 -7.4702 0.8893 29 1 3.5546 -8.2834 -0.8392 30 1 4.1771 -7.4225 1.3842 31 1 2.9788 -8.4926 2.1530 32 1 5.2255 -9.5017 2.2874 33 1 5.4010 -9.3809 0.5201 34 1 2.8446 -11.8876 -0.0922 35 1 3.9988 -10.7859 -0.8813 36 1 1.5102 -9.9642 0.6853 37 1 1.7081 -9.8967 -1.0836 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052154322.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:18 Heat of formation + Delta-G solvation = -147.114098 kcal Electronic energy + Delta-G solvation = -15628.799442 eV Core-core repulsion = 12983.132227 eV Total energy + Delta-G solvation = -2645.667215 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.46204 -38.89366 -36.08842 -35.05322 -33.36173 -32.01517 -29.16348 -27.77082 -24.89136 -24.42473 -23.61579 -22.06617 -20.97298 -18.58555 -17.42517 -17.29749 -17.06715 -16.83090 -16.45252 -15.84627 -15.68032 -15.19656 -14.55054 -14.47985 -14.25921 -13.57881 -13.32430 -13.21955 -12.95455 -12.67882 -12.48658 -12.27340 -12.17799 -11.90413 -11.67611 -11.54819 -11.46469 -11.25156 -11.15464 -10.57236 -10.54419 -10.46499 -8.22234 -6.33627 1.40190 1.43531 1.51561 2.39295 2.68195 2.99529 3.11056 3.69289 3.84020 3.91749 4.08464 4.14736 4.26608 4.30186 4.36252 4.45709 4.56196 4.60004 4.66699 4.78421 4.80422 4.85989 4.88525 4.91748 4.97184 5.13398 5.15454 5.21951 5.36430 5.47632 5.67931 5.80891 6.17392 6.26887 6.31884 6.81949 7.35637 8.89684 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.068595 B = 0.003663 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.092696 B = 7642.453848 C = 7912.012043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.027 3.973 10 C -0.096 4.096 11 C 0.074 3.926 12 O -0.403 6.403 13 C 0.061 3.939 14 C -0.087 4.087 15 C -0.147 4.147 16 C 0.061 3.939 17 O -0.404 6.404 18 C 0.058 3.942 19 C -0.145 4.145 20 H 0.265 0.735 21 H -0.003 1.003 22 H -0.004 1.004 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.057 0.943 34 H 0.111 0.889 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.861 -20.601 -0.138 21.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.010 4.010 10 C -0.134 4.134 11 C -0.002 4.002 12 O -0.323 6.323 13 C -0.016 4.016 14 C -0.105 4.105 15 C -0.185 4.185 16 C -0.015 4.015 17 O -0.323 6.323 18 C -0.018 4.018 19 C -0.182 4.182 20 H 0.074 0.926 21 H 0.015 0.985 22 H 0.015 0.985 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.075 0.925 34 H 0.129 0.871 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.914 -20.615 0.001 21.446 hybrid contribution -0.301 1.340 -0.164 1.383 sum 5.613 -19.275 -0.163 20.076 Atomic orbital electron populations 1.70079 1.07782 1.27998 1.51404 1.25992 0.95827 1.03417 0.94535 0.85464 0.78268 0.77870 0.79239 1.19122 1.20637 1.19159 1.21633 0.93599 0.92282 1.51029 0.92212 1.18927 0.94249 0.92549 0.95277 1.21388 0.98591 0.92175 1.01224 1.22461 0.91697 0.86175 0.99909 1.87827 1.34565 1.14437 1.95511 1.22685 0.95704 0.82548 1.00631 1.21185 0.96868 0.93703 0.98749 1.22162 0.99182 0.99647 0.97480 1.22655 0.93521 0.82543 1.02799 1.87895 1.68202 1.36212 1.40004 1.22723 0.93213 0.99652 0.86224 1.22168 0.99046 0.93126 1.03884 0.92622 0.98473 0.98544 0.92804 0.92755 0.93341 0.93539 0.92533 0.93204 0.90517 0.91169 0.91736 0.87923 0.92469 0.87071 0.92331 0.90987 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.55 -31.84 9.11 25.60 0.23 -31.60 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.46 4.97 29.85 0.15 1.61 16 10 C -0.10 -4.20 5.52 30.59 0.17 -4.03 16 11 C 0.07 2.69 5.94 71.98 0.43 3.12 16 12 O -0.40 -13.35 9.96 -148.98 -1.48 -14.83 16 13 C 0.06 1.51 5.32 71.98 0.38 1.90 16 14 C -0.09 -1.79 2.51 -10.68 -0.03 -1.82 16 15 C -0.15 -3.13 5.29 30.68 0.16 -2.97 16 16 C 0.06 1.13 6.84 72.01 0.49 1.62 16 17 O -0.40 -8.18 10.77 -148.98 -1.60 -9.79 16 18 C 0.06 0.88 6.84 72.01 0.49 1.37 16 19 C -0.14 -2.28 5.42 30.68 0.17 -2.11 16 20 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 21 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 22 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 23 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 24 H 0.05 2.35 8.14 -2.39 -0.02 2.34 16 25 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 1.69 7.93 -2.38 -0.02 1.67 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -65.35 302.36 3.33 -62.02 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: 1.00 Total: 5.24 kcal Atomic # 6 Polarization: -35.57 SS G_CDS: 3.11 Total: -32.45 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 0.28 Total: -56.77 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -3.09 Total: -24.62 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -65.35 3.33 -62.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052154322.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.095 kcal (2) G-P(sol) polarization free energy of solvation -65.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds