Wall clock time and date at job start Mon Mar 30 2020 03:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99701 * 2 1 4 4 H 1.09002 * 109.47590 * 30.00145 * 3 2 1 5 5 C 1.52998 * 109.47181 * 269.99749 * 3 2 1 6 6 C 1.52997 * 109.47604 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.46862 * 59.99983 * 6 5 3 8 8 C 1.52998 * 109.47352 * 300.00179 * 7 6 5 9 9 H 1.09001 * 109.47466 * 180.02562 * 8 7 6 10 10 O 1.42905 * 109.47307 * 300.00121 * 8 7 6 11 11 C 1.42899 * 113.99778 * 269.99994 * 10 8 7 12 12 C 1.52999 * 109.46889 * 179.97438 * 11 10 8 13 13 C 1.50702 * 109.47298 * 179.97438 * 12 11 10 14 14 H 1.08009 * 119.99719 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00263 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99836 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99857 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.47340 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46949 * 120.00605 * 17 15 13 20 20 H 1.48493 * 109.47246 * 240.00355 * 17 15 13 21 21 C 1.53004 * 109.47120 * 149.99833 * 3 2 1 22 22 H 1.09005 * 109.47453 * 299.99701 * 1 2 3 23 23 H 1.08997 * 109.47427 * 59.99956 * 1 2 3 24 24 H 1.09005 * 109.46960 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47177 * 300.00088 * 5 3 2 26 26 H 1.09004 * 109.46895 * 60.00394 * 5 3 2 27 27 H 1.08998 * 109.48011 * 180.02562 * 6 5 3 28 28 H 1.09002 * 109.47424 * 300.00554 * 6 5 3 29 29 H 1.08997 * 109.47082 * 180.02562 * 7 6 5 30 30 H 1.09002 * 109.47092 * 60.00361 * 7 6 5 31 31 H 1.08997 * 109.47171 * 299.99768 * 11 10 8 32 32 H 1.08997 * 109.47442 * 59.99964 * 11 10 8 33 33 H 1.08997 * 109.47286 * 300.00017 * 12 11 10 34 34 H 1.09008 * 109.47201 * 60.00236 * 12 11 10 35 35 H 0.97004 * 119.99824 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.47092 * 60.00001 * 21 3 2 37 37 H 1.09001 * 109.47233 * 299.99773 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 2.8392 3.1694 -1.4426 7 6 4.1878 3.1278 -0.7211 8 6 3.9804 2.6620 0.7214 9 1 4.9411 2.6328 1.2355 10 8 3.1077 3.5714 1.3949 11 6 3.7823 4.6500 2.0457 12 6 2.7555 5.5553 2.7291 13 6 3.4669 6.6926 3.4160 14 1 4.5437 6.7628 3.3694 15 6 2.7431 7.6439 4.1030 16 7 1.4320 7.5586 4.1594 17 14 3.6250 9.0531 4.9551 18 1 5.0888 8.9212 4.7434 19 1 3.1577 10.3440 4.3888 20 1 3.3293 9.0148 6.4098 21 6 3.3588 1.2633 0.7213 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 2.8829 1.0775 -1.9563 26 1 1.2567 1.8014 -1.9563 27 1 2.9866 3.5015 -2.4702 28 1 2.1736 3.8631 -0.9289 29 1 4.6305 4.1239 -0.7208 30 1 4.8535 2.4342 -1.2348 31 1 4.4694 4.2513 2.7920 32 1 4.3410 5.2267 1.3087 33 1 2.0687 5.9540 1.9825 34 1 2.1964 4.9789 3.4662 35 1 0.9228 8.2278 4.6431 36 1 4.0241 0.5694 0.2075 37 1 3.2110 0.9315 1.7490 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069848660.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:15 Heat of formation + Delta-G solvation = -142.203800 kcal Electronic energy + Delta-G solvation = -16358.261107 eV Core-core repulsion = 13712.806819 eV Total energy + Delta-G solvation = -2645.454288 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.59289 -38.65654 -36.43458 -35.16313 -32.20741 -31.20691 -30.28623 -27.35170 -26.61088 -23.56858 -23.13276 -22.81613 -20.69282 -18.59800 -17.78989 -17.11241 -16.66232 -16.56412 -16.28125 -16.01403 -15.49610 -14.87511 -14.60924 -14.35071 -13.84452 -13.59167 -13.31810 -13.21848 -12.98365 -12.70382 -12.52624 -12.39389 -12.36187 -11.94061 -11.67032 -11.60916 -11.40554 -11.36754 -11.11740 -10.65988 -10.45574 -10.20895 -8.24561 -6.37578 1.40624 1.41547 1.55127 2.37237 2.78046 2.93655 3.09622 3.74779 3.83468 4.05564 4.19397 4.22780 4.36760 4.42592 4.46192 4.50254 4.53211 4.56351 4.63028 4.70029 4.81775 4.86756 4.97083 4.97495 5.07524 5.19178 5.25824 5.30610 5.37230 5.46840 5.58823 5.74007 6.12176 6.26641 6.50556 6.79039 7.32571 8.88821 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.039158 B = 0.005289 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.876050 B = 5292.350929 C = 5606.440403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.403 6.403 3 C 0.090 3.910 4 H 0.044 0.956 5 C -0.128 4.128 6 C -0.112 4.112 7 C -0.138 4.138 8 C 0.080 3.920 9 H 0.072 0.928 10 O -0.402 6.402 11 C 0.087 3.913 12 C 0.029 3.971 13 C -0.544 4.544 14 H 0.067 0.933 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.974 3.026 18 H -0.258 1.258 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.105 4.105 22 H 0.034 0.966 23 H 0.048 0.952 24 H 0.104 0.896 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.042 0.958 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.043 0.957 32 H 0.044 0.956 33 H -0.008 1.008 34 H -0.009 1.009 35 H 0.265 0.735 36 H 0.102 0.898 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.641 -12.553 -10.843 16.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C 0.033 3.967 4 H 0.062 0.938 5 C -0.166 4.166 6 C -0.149 4.149 7 C -0.176 4.176 8 C 0.022 3.978 9 H 0.090 0.910 10 O -0.322 6.322 11 C 0.011 3.989 12 C -0.008 4.008 13 C -0.582 4.582 14 H 0.086 0.914 15 C -0.198 4.198 16 N -0.573 5.573 17 Si 0.798 3.202 18 H -0.182 1.182 19 H -0.202 1.202 20 H -0.203 1.203 21 C -0.143 4.143 22 H 0.053 0.947 23 H 0.066 0.934 24 H 0.122 0.878 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.011 0.989 34 H 0.009 0.991 35 H 0.074 0.926 36 H 0.120 0.880 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.404 -12.665 -10.776 16.974 hybrid contribution -0.134 1.142 0.685 1.339 sum 3.270 -11.523 -10.091 15.662 Atomic orbital electron populations 1.22924 0.80170 1.03720 1.00213 1.87807 1.20872 1.28331 1.95259 1.22053 0.94875 0.83658 0.96159 0.93787 1.21930 1.01628 0.97023 0.95990 1.21357 0.96499 0.96424 1.00636 1.22040 0.98190 1.02204 0.95157 1.22265 0.93395 0.88899 0.93223 0.91013 1.87926 1.35356 1.38712 1.70201 1.22453 0.95101 0.87127 0.94232 1.18918 0.94459 0.93299 0.94135 1.21519 0.94027 1.09487 1.33182 0.91448 1.26040 0.95587 1.01175 0.96994 1.70135 1.07268 1.36711 1.43206 0.85267 0.79070 0.77984 0.77915 1.18165 1.20226 1.20266 1.21661 0.96197 0.95360 1.01070 0.94694 0.93372 0.87771 0.89941 0.91683 0.90164 0.93885 0.92170 0.88527 0.93912 0.93755 0.98917 0.99067 0.92576 0.87982 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.82 113.37 1.23 1.79 16 2 O -0.40 -10.88 10.35 -148.98 -1.54 -12.43 16 3 C 0.09 2.52 2.46 30.59 0.08 2.59 16 4 H 0.04 1.48 7.32 -2.39 -0.02 1.46 16 5 C -0.13 -3.01 5.54 30.59 0.17 -2.84 16 6 C -0.11 -2.83 5.78 30.59 0.18 -2.65 16 7 C -0.14 -3.44 5.63 30.59 0.17 -3.26 16 8 C 0.08 2.34 2.92 30.61 0.09 2.43 16 9 H 0.07 1.94 7.78 -2.39 -0.02 1.93 16 10 O -0.40 -16.05 8.64 -148.98 -1.29 -17.34 16 11 C 0.09 3.81 5.69 71.98 0.41 4.22 16 12 C 0.03 1.62 5.34 29.85 0.16 1.78 16 13 C -0.54 -31.41 9.11 25.60 0.23 -31.18 16 14 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 15 C 0.00 0.00 5.46 84.65 0.46 0.47 16 16 N -0.93 -57.83 13.29 21.45 0.28 -57.54 16 17 Si 0.97 44.16 29.54 68.60 2.03 46.18 16 18 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 21 C -0.11 -2.82 5.32 30.61 0.16 -2.66 16 22 H 0.03 0.80 8.09 -2.38 -0.02 0.78 16 23 H 0.05 0.94 7.87 -2.39 -0.02 0.92 16 24 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 25 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.06 1.45 7.87 -2.38 -0.02 1.43 16 27 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.04 1.37 7.68 -2.39 -0.02 1.35 16 29 H 0.06 1.58 7.87 -2.39 -0.02 1.56 16 30 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.04 1.78 8.08 -2.39 -0.02 1.77 16 32 H 0.04 1.84 7.87 -2.39 -0.02 1.82 16 33 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 34 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 35 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -66.66 298.82 3.82 -62.83 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 1.00 Total: 7.61 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: 3.34 Total: -29.32 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.28 Total: -57.54 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -2.83 Total: -29.77 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -66.66 3.82 -62.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069848660.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.371 kcal (2) G-P(sol) polarization free energy of solvation -66.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds