Wall clock time and date at job start Mon Mar 30 2020 03:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47454 * 2 1 4 4 O 1.42896 * 109.47202 * 179.97438 * 3 2 1 5 5 C 1.42902 * 113.99816 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.46901 * 180.02562 * 5 4 3 7 7 O 1.42893 * 109.47050 * 65.00084 * 6 5 4 8 8 C 1.42902 * 113.99957 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47223 * 179.97438 * 8 7 6 10 10 C 1.50697 * 115.55029 * 294.87445 * 9 8 7 11 11 H 1.07997 * 119.99665 * 99.48226 * 10 9 8 12 12 C 1.37877 * 120.00356 * 279.20251 * 10 9 8 13 13 N 1.31522 * 119.99643 * 355.33780 * 12 10 9 14 14 Si 1.86797 * 120.00262 * 175.33855 * 12 10 9 15 15 H 1.48494 * 109.47123 * 59.99599 * 14 12 10 16 16 H 1.48495 * 109.47266 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46682 * 300.00013 * 14 12 10 18 18 C 1.53003 * 117.51599 * 80.57771 * 9 8 7 19 19 C 1.53000 * 117.49646 * 149.20627 * 9 8 7 20 20 H 1.09004 * 109.46460 * 60.00133 * 1 2 3 21 21 H 1.08996 * 109.47295 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47096 * 300.00616 * 1 2 3 23 23 H 1.08992 * 109.47608 * 239.99726 * 2 1 3 24 24 H 1.09008 * 109.46921 * 119.99696 * 2 1 3 25 25 H 1.09006 * 109.46803 * 59.99454 * 3 2 1 26 26 H 1.08999 * 109.46713 * 299.99961 * 3 2 1 27 27 H 1.09000 * 109.47326 * 59.99802 * 5 4 3 28 28 H 1.09003 * 109.47043 * 299.99671 * 5 4 3 29 29 H 1.08991 * 109.47276 * 304.99379 * 6 5 4 30 30 H 1.09001 * 109.46804 * 184.99648 * 6 5 4 31 31 H 1.09002 * 109.47130 * 59.99777 * 8 7 6 32 32 H 1.08995 * 109.47694 * 300.00133 * 8 7 6 33 33 H 0.97001 * 119.99689 * 179.97438 * 13 12 10 34 34 H 1.08991 * 117.50140 * 214.96955 * 18 9 8 35 35 H 1.09004 * 117.49632 * 359.97438 * 18 9 8 36 36 H 1.09005 * 117.50141 * 359.97438 * 19 9 8 37 37 H 1.08999 * 117.50386 * 144.97658 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4424 0.0006 5 6 4.0503 2.7479 0.0012 6 6 5.5756 2.6270 0.0012 7 8 6.0054 2.0224 -1.2201 8 6 7.4218 1.8629 -1.3227 9 6 7.7657 1.2090 -2.6625 10 6 7.2683 -0.2019 -2.8438 11 1 6.3670 -0.3883 -3.4088 12 6 7.9669 -1.2554 -2.2931 13 7 9.1147 -1.0388 -1.6887 14 14 7.2831 -2.9901 -2.4056 15 1 7.1280 -3.3694 -3.8328 16 1 8.2167 -3.9342 -1.7405 17 1 5.9608 -3.0455 -1.7321 18 6 7.8039 2.1090 -3.8992 19 6 9.1069 1.5729 -3.3025 20 1 -0.3632 0.5139 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 1.6767 1.9564 0.8900 26 1 1.6768 1.9563 -0.8900 27 1 3.7283 3.2886 0.8912 28 1 3.7291 3.2891 -0.8888 29 1 5.8912 2.0105 0.8427 30 1 6.0186 3.6189 0.0912 31 1 7.7761 1.2306 -0.5086 32 1 7.9029 2.8389 -1.2603 33 1 9.6060 -1.7799 -1.3010 34 1 7.4693 1.6807 -4.8439 35 1 7.5836 3.1672 -3.7585 36 1 9.7440 2.2786 -2.7694 37 1 9.6296 0.7918 -3.8545 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862529.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:23 Heat of formation + Delta-G solvation = -82.013526 kcal Electronic energy + Delta-G solvation = -16099.617223 eV Core-core repulsion = 13456.772981 eV Total energy + Delta-G solvation = -2642.844242 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.12002 -37.16394 -35.46088 -33.57343 -31.80795 -29.58343 -26.12724 -25.63226 -24.73869 -22.12642 -21.32118 -20.95469 -19.04782 -16.63078 -16.48597 -15.97651 -15.27316 -14.81601 -14.55058 -14.36329 -13.93876 -13.74106 -13.05998 -12.65392 -12.17699 -12.04434 -11.89826 -11.44881 -11.26350 -10.88996 -10.80883 -10.80278 -10.64892 -10.46363 -10.38498 -10.09254 -9.39929 -9.28599 -8.99550 -8.53927 -8.29025 -7.99489 -5.91920 -3.94448 3.40876 3.43797 3.49606 3.87009 4.44365 4.54026 4.99980 5.05379 5.29673 5.37949 5.38859 5.45630 5.49673 5.52866 5.55409 5.72641 5.77336 5.88860 5.97090 6.11741 6.19213 6.22501 6.29866 6.39874 6.49985 6.79355 6.81023 6.89977 7.16920 7.48453 7.53316 7.61032 8.01385 8.25259 8.58933 9.05132 9.69390 11.17696 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.019564 B = 0.007674 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.826537 B = 3647.680763 C = 4642.978395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C 0.062 3.938 4 O -0.372 6.372 5 C 0.070 3.930 6 C 0.061 3.939 7 O -0.364 6.364 8 C 0.108 3.892 9 C 0.044 3.956 10 C -0.477 4.477 11 H 0.059 0.941 12 C 0.067 3.933 13 N -0.888 5.888 14 Si 0.890 3.110 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.275 1.275 18 C -0.206 4.206 19 C -0.151 4.151 20 H 0.054 0.946 21 H 0.059 0.941 22 H 0.052 0.948 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.041 0.959 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.013 0.987 33 H 0.259 0.741 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.081 6.354 4.663 13.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.015 4.015 4 O -0.291 6.291 5 C -0.007 4.007 6 C -0.017 4.017 7 O -0.283 6.283 8 C 0.032 3.968 9 C 0.044 3.956 10 C -0.514 4.514 11 H 0.077 0.923 12 C -0.135 4.135 13 N -0.526 5.526 14 Si 0.718 3.282 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.200 1.200 18 C -0.244 4.244 19 C -0.189 4.189 20 H 0.074 0.926 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.093 0.907 24 H 0.088 0.912 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.031 0.969 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.940 6.021 4.614 13.313 hybrid contribution -0.197 -0.557 0.294 0.660 sum -11.137 5.465 4.909 13.341 Atomic orbital electron populations 1.21688 0.95159 1.01984 1.01653 1.21462 0.95178 0.95981 1.03780 1.22483 0.82018 0.97614 0.99398 1.88066 1.18536 1.27294 1.95200 1.22489 0.93235 0.85206 0.99789 1.22350 0.92490 0.96880 0.89976 1.88027 1.23841 1.81300 1.35099 1.22150 0.79109 0.95483 1.00041 1.18727 0.96076 0.93650 0.87168 1.20341 1.09147 0.88516 1.33440 0.92266 1.24960 0.94561 0.98782 0.95152 1.70003 1.13428 1.31516 1.37607 0.86686 0.79081 0.84249 0.78192 1.20348 1.21449 1.20005 1.22917 1.04153 0.97462 0.99819 1.22528 0.90547 1.01426 1.04374 0.92643 0.92201 0.92847 0.90691 0.91235 0.94096 0.93655 0.92862 0.92837 0.93236 0.93106 0.93026 0.96862 0.93187 0.90500 0.91766 0.92060 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.13 -1.62 6.30 -26.73 -0.17 -1.79 16 3 C 0.06 0.84 5.94 37.16 0.22 1.06 16 4 O -0.37 -6.69 10.31 -40.09 -0.41 -7.10 16 5 C 0.07 1.08 6.32 37.16 0.23 1.31 16 6 C 0.06 1.08 6.32 37.16 0.23 1.32 16 7 O -0.36 -8.48 10.24 -40.09 -0.41 -8.90 16 8 C 0.11 2.63 5.76 37.16 0.21 2.85 16 9 C 0.04 1.16 1.61 -155.66 -0.25 0.91 16 10 C -0.48 -13.85 8.75 -34.44 -0.30 -14.15 16 11 H 0.06 1.75 7.82 -52.49 -0.41 1.34 16 12 C 0.07 1.93 5.44 -17.82 -0.10 1.83 16 13 N -0.89 -25.98 12.86 55.43 0.71 -25.27 16 14 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 17 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 18 C -0.21 -4.80 9.96 -26.73 -0.27 -5.07 16 19 C -0.15 -3.69 9.39 -26.73 -0.25 -3.94 16 20 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 24 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.01 0.29 8.09 -51.93 -0.42 -0.13 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 35 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.08 2.20 8.14 -51.93 -0.42 1.77 16 LS Contribution 314.45 15.07 4.74 4.74 Total: -1.00 -31.41 314.45 -7.19 -38.60 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -6.73 Total: -2.57 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -0.06 Total: -16.72 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.71 Total: -25.27 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.82 Total: -16.00 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.41 -7.19 -38.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862529.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.414 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds