Wall clock time and date at job start Mon Mar 30 2020 03:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47454 * 2 1 4 4 O 1.42896 * 109.47202 * 179.97438 * 3 2 1 5 5 C 1.42902 * 113.99816 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.46901 * 180.02562 * 5 4 3 7 7 O 1.42893 * 109.47050 * 65.00084 * 6 5 4 8 8 C 1.42902 * 113.99957 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47223 * 179.97438 * 8 7 6 10 10 C 1.50697 * 115.55029 * 294.87445 * 9 8 7 11 11 H 1.07997 * 119.99665 * 99.48226 * 10 9 8 12 12 C 1.37877 * 120.00356 * 279.20251 * 10 9 8 13 13 N 1.31522 * 119.99643 * 355.33780 * 12 10 9 14 14 Si 1.86797 * 120.00262 * 175.33855 * 12 10 9 15 15 H 1.48494 * 109.47123 * 59.99599 * 14 12 10 16 16 H 1.48495 * 109.47266 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46682 * 300.00013 * 14 12 10 18 18 C 1.53003 * 117.51599 * 80.57771 * 9 8 7 19 19 C 1.53000 * 117.49646 * 149.20627 * 9 8 7 20 20 H 1.09004 * 109.46460 * 60.00133 * 1 2 3 21 21 H 1.08996 * 109.47295 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47096 * 300.00616 * 1 2 3 23 23 H 1.08992 * 109.47608 * 239.99726 * 2 1 3 24 24 H 1.09008 * 109.46921 * 119.99696 * 2 1 3 25 25 H 1.09006 * 109.46803 * 59.99454 * 3 2 1 26 26 H 1.08999 * 109.46713 * 299.99961 * 3 2 1 27 27 H 1.09000 * 109.47326 * 59.99802 * 5 4 3 28 28 H 1.09003 * 109.47043 * 299.99671 * 5 4 3 29 29 H 1.08991 * 109.47276 * 304.99379 * 6 5 4 30 30 H 1.09001 * 109.46804 * 184.99648 * 6 5 4 31 31 H 1.09002 * 109.47130 * 59.99777 * 8 7 6 32 32 H 1.08995 * 109.47694 * 300.00133 * 8 7 6 33 33 H 0.97001 * 119.99689 * 179.97438 * 13 12 10 34 34 H 1.08991 * 117.50140 * 214.96955 * 18 9 8 35 35 H 1.09004 * 117.49632 * 359.97438 * 18 9 8 36 36 H 1.09005 * 117.50141 * 359.97438 * 19 9 8 37 37 H 1.08999 * 117.50386 * 144.97658 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4424 0.0006 5 6 4.0503 2.7479 0.0012 6 6 5.5756 2.6270 0.0012 7 8 6.0054 2.0224 -1.2201 8 6 7.4218 1.8629 -1.3227 9 6 7.7657 1.2090 -2.6625 10 6 7.2683 -0.2019 -2.8438 11 1 6.3670 -0.3883 -3.4088 12 6 7.9669 -1.2554 -2.2931 13 7 9.1147 -1.0388 -1.6887 14 14 7.2831 -2.9901 -2.4056 15 1 7.1280 -3.3694 -3.8328 16 1 8.2167 -3.9342 -1.7405 17 1 5.9608 -3.0455 -1.7321 18 6 7.8039 2.1090 -3.8992 19 6 9.1069 1.5729 -3.3025 20 1 -0.3632 0.5139 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 1.6767 1.9564 0.8900 26 1 1.6768 1.9563 -0.8900 27 1 3.7283 3.2886 0.8912 28 1 3.7291 3.2891 -0.8888 29 1 5.8912 2.0105 0.8427 30 1 6.0186 3.6189 0.0912 31 1 7.7761 1.2306 -0.5086 32 1 7.9029 2.8389 -1.2603 33 1 9.6060 -1.7799 -1.3010 34 1 7.4693 1.6807 -4.8439 35 1 7.5836 3.1672 -3.7585 36 1 9.7440 2.2786 -2.7694 37 1 9.6296 0.7918 -3.8545 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862529.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:23 Heat of formation + Delta-G solvation = -101.154111 kcal Electronic energy + Delta-G solvation = -16100.447221 eV Core-core repulsion = 13456.772981 eV Total energy + Delta-G solvation = -2643.674240 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.54284 -38.77307 -37.21592 -34.59925 -33.98306 -30.92424 -27.98483 -26.94261 -26.54853 -23.44920 -22.85054 -22.32230 -21.06592 -18.27689 -17.87836 -17.52994 -16.71585 -16.64802 -16.15093 -16.04944 -15.50702 -14.94991 -14.68771 -14.13318 -13.54647 -13.36319 -13.24442 -12.96381 -12.86305 -12.76519 -12.62267 -12.34915 -12.07330 -11.90507 -11.77501 -11.73697 -11.28184 -10.97522 -10.51869 -10.42877 -10.31148 -9.95949 -8.10498 -6.18766 1.38275 1.41802 1.48715 2.43456 2.77066 2.88153 3.18826 3.61440 4.02643 4.03943 4.20729 4.27128 4.33123 4.38081 4.48392 4.52293 4.54024 4.58278 4.64072 4.66880 4.78885 4.86664 4.90304 4.95625 5.01401 5.14527 5.22827 5.24373 5.35220 5.61276 5.64651 5.79450 6.34620 6.41928 6.63005 6.83657 7.47363 8.98211 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.019564 B = 0.007674 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.826537 B = 3647.680763 C = 4642.978395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.130 4.130 3 C 0.057 3.943 4 O -0.416 6.416 5 C 0.070 3.930 6 C 0.050 3.950 7 O -0.391 6.391 8 C 0.121 3.879 9 C 0.005 3.995 10 C -0.498 4.498 11 H 0.041 0.959 12 C 0.024 3.976 13 N -0.909 5.909 14 Si 0.945 3.055 15 H -0.270 1.270 16 H -0.279 1.279 17 H -0.279 1.279 18 C -0.183 4.183 19 C -0.148 4.148 20 H 0.061 0.939 21 H 0.066 0.934 22 H 0.069 0.931 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.020 0.980 32 H 0.040 0.960 33 H 0.260 0.740 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.247 7.450 5.096 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C -0.019 4.019 4 O -0.336 6.336 5 C -0.006 4.006 6 C -0.027 4.027 7 O -0.311 6.311 8 C 0.045 3.955 9 C 0.004 3.996 10 C -0.536 4.536 11 H 0.059 0.941 12 C -0.175 4.175 13 N -0.548 5.548 14 Si 0.771 3.229 15 H -0.195 1.195 16 H -0.204 1.204 17 H -0.205 1.205 18 C -0.220 4.220 19 C -0.185 4.185 20 H 0.080 0.920 21 H 0.085 0.915 22 H 0.088 0.912 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.039 0.961 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.115 7.126 5.043 14.932 hybrid contribution 0.124 -0.857 0.178 0.884 sum -11.991 6.269 5.221 14.503 Atomic orbital electron populations 1.21646 0.92456 1.02850 1.02786 1.21518 0.97522 0.95564 1.02135 1.22701 0.80072 0.98185 1.00960 1.88014 1.21016 1.28993 1.95559 1.22619 0.91358 0.84762 1.01909 1.22723 0.94549 0.97854 0.87541 1.87976 1.23059 1.82240 1.37813 1.21839 0.80121 0.95874 0.97696 1.18919 0.97721 0.93446 0.89472 1.20559 1.08713 0.90721 1.33598 0.94083 1.25607 0.94861 1.02135 0.94931 1.70083 1.14140 1.32435 1.38100 0.85812 0.78242 0.80326 0.78495 1.19503 1.20399 1.20456 1.22919 1.02402 0.98393 0.98309 1.22438 0.90558 1.01298 1.04230 0.91978 0.91540 0.91188 0.93278 0.91995 0.91415 0.92956 0.88838 0.92346 0.94275 0.89850 0.96149 0.94199 0.93108 0.90745 0.88968 0.90137 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.91 71.98 0.71 -1.73 16 2 C -0.13 -3.27 6.30 30.60 0.19 -3.07 16 3 C 0.06 1.46 5.94 71.98 0.43 1.89 16 4 O -0.42 -14.68 10.31 -144.34 -1.49 -16.17 16 5 C 0.07 2.02 6.32 71.98 0.45 2.47 16 6 C 0.05 1.72 6.32 71.98 0.45 2.18 16 7 O -0.39 -18.13 10.24 -144.34 -1.48 -19.60 16 8 C 0.12 5.85 5.76 71.98 0.41 6.27 16 9 C 0.00 0.25 1.61 -52.93 -0.09 0.17 16 10 C -0.50 -29.48 8.75 25.60 0.22 -29.25 16 11 H 0.04 2.49 7.82 -2.91 -0.02 2.47 16 12 C 0.02 1.41 5.44 84.65 0.46 1.87 16 13 N -0.91 -53.88 12.86 21.45 0.28 -53.60 16 14 Si 0.95 46.25 29.54 68.60 2.03 48.27 16 15 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 16 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 17 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 18 C -0.18 -8.28 9.96 30.60 0.30 -7.98 16 19 C -0.15 -7.13 9.39 30.60 0.29 -6.84 16 20 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 21 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 25 H 0.07 1.36 8.14 -2.38 -0.02 1.35 16 26 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.04 1.68 8.09 -2.39 -0.02 1.66 16 33 H 0.26 14.69 8.31 -92.71 -0.77 13.91 16 34 H 0.07 3.36 8.14 -2.39 -0.02 3.34 16 35 H 0.09 3.63 8.14 -2.38 -0.02 3.61 16 36 H 0.08 3.52 8.14 -2.38 -0.02 3.50 16 37 H 0.06 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -68.13 314.45 4.18 -63.94 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 1.00 Total: 11.18 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 3.85 Total: -34.03 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.28 Total: -53.60 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -2.97 Total: -35.77 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -68.13 4.18 -63.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862529.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.209 kcal (2) G-P(sol) polarization free energy of solvation -68.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds