Wall clock time and date at job start Mon Mar 30 2020 03:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 120.00165 * 2 1 4 4 C 1.50703 * 109.46384 * 269.99627 * 3 2 1 5 5 H 1.07996 * 120.00925 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99754 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00220 * 179.97438 * 6 4 3 8 8 Si 1.86805 * 119.99729 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.46705 * 89.99929 * 8 6 4 10 10 H 1.48504 * 109.47206 * 209.99643 * 8 6 4 11 11 H 1.48500 * 109.47176 * 330.00233 * 8 6 4 12 12 C 1.34772 * 119.99682 * 179.97438 * 2 1 3 13 13 O 1.21284 * 120.00357 * 185.32530 * 12 2 1 14 14 C 1.50708 * 120.00438 * 5.32855 * 12 2 1 15 15 H 1.09004 * 110.44974 * 310.01733 * 14 12 2 16 16 C 1.54482 * 110.50883 * 72.61521 * 14 12 2 17 17 O 1.44433 * 104.79711 * 94.80844 * 16 14 12 18 18 C 1.44422 * 105.27669 * 40.51041 * 17 16 14 19 19 C 1.54480 * 104.80286 * 319.49031 * 18 17 16 20 20 H 1.09005 * 110.62148 * 265.27235 * 19 18 17 21 21 N 1.46900 * 110.51136 * 142.62591 * 19 18 17 22 22 H 1.09005 * 109.47064 * 264.79864 * 1 2 3 23 23 H 1.09001 * 109.46764 * 24.79463 * 1 2 3 24 24 H 1.09002 * 109.47214 * 144.79515 * 1 2 3 25 25 H 1.09001 * 109.47082 * 29.99400 * 3 2 1 26 26 H 1.08997 * 109.47097 * 149.99896 * 3 2 1 27 27 H 0.97000 * 119.99912 * 179.97438 * 7 6 4 28 28 H 1.08996 * 110.37247 * 335.97922 * 16 14 12 29 29 H 1.08992 * 110.37401 * 213.63608 * 16 14 12 30 30 H 1.09006 * 110.36769 * 78.31718 * 18 17 16 31 31 H 1.08995 * 110.37181 * 200.65405 * 18 17 16 32 32 H 1.00894 * 111.00186 * 65.35383 * 21 19 18 33 33 H 1.00902 * 110.99992 * 189.30818 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7035 -1.4209 5 1 2.0975 1.0960 -2.2418 6 6 3.1261 2.8777 -1.6730 7 7 3.3458 3.2570 -2.9129 8 14 3.7331 3.9291 -0.2532 9 1 5.1067 3.5079 0.1227 10 1 3.7480 5.3559 -0.6647 11 1 2.8272 3.7591 0.9112 12 6 2.1389 -1.1672 0.0005 13 8 3.3478 -1.1696 0.0980 14 6 1.3902 -2.4696 -0.1201 15 1 0.5706 -2.5057 0.5976 16 6 0.8588 -2.6572 -1.5585 17 8 1.8659 -3.4510 -2.2232 18 6 2.2766 -4.4367 -1.2508 19 6 2.3442 -3.6671 0.0870 20 1 3.3591 -3.3183 0.2784 21 7 1.8754 -4.5137 1.1921 22 1 -0.3633 -0.0932 1.0235 23 1 -0.3633 0.9330 -0.4310 24 1 -0.3634 -0.8397 -0.5925 25 1 1.6085 2.0284 0.5137 26 1 3.1500 1.1383 0.5138 27 1 3.8220 4.0833 -3.0901 28 1 0.7502 -1.6914 -2.0518 29 1 -0.0937 -3.1867 -1.5450 30 1 1.5413 -5.2391 -1.1902 31 1 3.2569 -4.8378 -1.5079 32 1 2.4935 -5.2985 1.3338 33 1 1.7723 -3.9769 2.0403 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085371783.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:50 Heat of formation + Delta-G solvation = -100.493144 kcal Electronic energy + Delta-G solvation = -16589.339012 eV Core-core repulsion = 13842.153090 eV Total energy + Delta-G solvation = -2747.185922 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.58657 -39.47141 -36.76762 -35.27062 -34.75891 -32.15191 -30.02936 -28.68471 -27.47750 -25.24303 -23.94999 -21.94508 -20.06432 -19.18032 -18.30506 -17.57793 -17.20286 -16.85196 -16.46818 -16.15775 -15.84788 -15.50508 -15.07498 -14.61436 -14.01227 -13.94412 -13.71421 -13.34055 -13.15987 -12.87571 -12.70463 -12.51243 -12.29496 -12.16960 -12.04449 -11.77405 -11.05115 -10.86212 -10.59172 -9.74874 -9.45491 -8.36628 -6.42633 1.30281 1.34616 1.43176 1.63314 2.22139 2.28524 2.91097 2.97399 3.29088 3.45534 3.69191 3.84640 4.16977 4.29067 4.37590 4.42791 4.58663 4.61329 4.65982 4.74105 4.79250 4.89055 4.91636 4.94741 5.42197 5.55668 5.68680 6.08618 6.20067 6.49386 6.59107 6.62032 7.16685 7.32194 8.80400 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.038188 B = 0.007500 C = 0.007258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.029656 B = 3732.451987 C = 3856.871053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.604 5.604 3 C 0.223 3.777 4 C -0.541 4.541 5 H 0.028 0.972 6 C 0.010 3.990 7 N -0.944 5.944 8 Si 0.949 3.051 9 H -0.278 1.278 10 H -0.273 1.273 11 H -0.236 1.236 12 C 0.505 3.495 13 O -0.593 6.593 14 C -0.128 4.128 15 H 0.146 0.854 16 C 0.061 3.939 17 O -0.402 6.402 18 C 0.053 3.947 19 C 0.066 3.934 20 H 0.044 0.956 21 N -0.824 5.824 22 H 0.086 0.914 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.054 0.946 26 H 0.018 0.982 27 H 0.269 0.731 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.356 0.644 33 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.702 -13.389 10.285 18.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.335 5.335 3 C 0.100 3.900 4 C -0.579 4.579 5 H 0.046 0.954 6 C -0.188 4.188 7 N -0.584 5.584 8 Si 0.772 3.228 9 H -0.204 1.204 10 H -0.198 1.198 11 H -0.159 1.159 12 C 0.293 3.707 13 O -0.474 6.474 14 C -0.150 4.150 15 H 0.164 0.836 16 C -0.016 4.016 17 O -0.321 6.321 18 C -0.024 4.024 19 C -0.046 4.046 20 H 0.062 0.938 21 N -0.357 5.357 22 H 0.104 0.896 23 H 0.090 0.910 24 H 0.103 0.897 25 H 0.072 0.928 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.131 0.869 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.170 0.830 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.608 -13.313 9.557 18.511 hybrid contribution 1.582 1.158 0.485 2.020 sum -7.026 -12.155 10.042 17.261 Atomic orbital electron populations 1.22085 0.77424 1.04199 1.03297 1.47899 1.08541 1.05765 1.71257 1.19366 0.92822 0.82472 0.95315 1.21577 1.37093 1.06861 0.92390 0.95403 1.25884 0.95213 0.98966 0.98707 1.70053 1.42564 1.24462 1.21346 0.85696 0.79499 0.77793 0.79828 1.20356 1.19799 1.15898 1.21014 0.87565 0.86513 0.75590 1.90599 1.16755 1.87799 1.52250 1.22663 1.00013 0.90823 1.01469 0.83642 1.23489 0.92806 0.96329 0.88967 1.89163 1.58027 1.47237 1.37666 1.23597 1.01797 0.91439 0.85580 1.22547 0.96509 0.91586 0.93969 0.93761 1.58785 1.55673 1.12709 1.08562 0.89600 0.90964 0.89720 0.92825 0.96422 0.92199 0.90667 0.86896 0.88617 0.88865 0.82970 0.83530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.98 9.85 127.77 1.26 3.24 16 2 N -0.60 -24.48 2.86 -851.10 -2.43 -26.91 16 3 C 0.22 10.94 4.25 85.63 0.36 11.30 16 4 C -0.54 -32.34 9.94 25.60 0.25 -32.08 16 5 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 6 C 0.01 0.62 5.47 84.66 0.46 1.09 16 7 N -0.94 -60.54 13.96 21.45 0.30 -60.24 16 8 Si 0.95 44.80 27.47 68.60 1.88 46.69 16 9 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.24 -9.90 6.54 99.48 0.65 -9.25 16 12 C 0.50 20.69 6.84 87.66 0.60 21.29 16 13 O -0.59 -30.29 14.88 -3.04 -0.05 -30.34 16 14 C -0.13 -3.65 2.29 -10.52 -0.02 -3.67 16 15 H 0.15 3.05 7.50 -2.38 -0.02 3.03 16 16 C 0.06 1.74 6.01 72.49 0.44 2.18 16 17 O -0.40 -13.64 11.65 -148.98 -1.74 -15.38 16 18 C 0.05 1.35 7.35 72.49 0.53 1.88 16 19 C 0.07 1.77 3.84 45.93 0.18 1.94 16 20 H 0.04 1.51 6.54 -2.38 -0.02 1.50 16 21 N -0.82 -14.70 9.18 -164.48 -1.51 -16.21 16 22 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 23 H 0.07 2.11 8.03 -2.39 -0.02 2.09 16 24 H 0.08 1.90 5.31 -2.39 -0.01 1.89 16 25 H 0.05 2.38 7.13 -2.39 -0.02 2.37 16 26 H 0.02 0.94 6.78 -2.39 -0.02 0.92 16 27 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 28 H 0.08 2.51 7.06 -2.39 -0.02 2.50 16 29 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.10 1.93 8.06 -2.38 -0.02 1.91 16 31 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.36 5.00 9.08 -89.70 -0.81 4.19 16 33 H 0.35 5.70 9.02 -89.69 -0.81 4.89 16 Total: -1.00 -80.03 271.89 -0.02 -80.06 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -0.55 Total: 15.16 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 4.06 Total: 7.17 kcal Atomic # 7 Polarization: -99.72 SS G_CDS: -3.64 Total: -103.36 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -1.78 Total: -45.72 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.69 kcal Total: -80.03 -0.02 -80.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085371783.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.436 kcal (2) G-P(sol) polarization free energy of solvation -80.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds