Wall clock time and date at job start Mon Mar 30 2020 02:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47347 * 2 1 4 4 C 1.50698 * 109.47322 * 239.99731 * 2 1 3 5 5 H 1.08004 * 119.99844 * 239.99879 * 4 2 1 6 6 C 1.37874 * 119.99994 * 59.99952 * 4 2 1 7 7 N 1.31509 * 120.00164 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00071 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47262 * 90.00065 * 8 6 4 10 10 H 1.48497 * 109.47504 * 210.00169 * 8 6 4 11 11 H 1.48505 * 109.47291 * 330.00189 * 8 6 4 12 12 N 1.46502 * 109.47300 * 119.99752 * 2 1 3 13 13 C 1.34775 * 120.00040 * 275.00454 * 12 2 1 14 14 O 1.21284 * 119.99878 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00547 * 179.97438 * 13 12 2 16 16 H 1.09004 * 110.45563 * 298.85227 * 15 13 12 17 17 C 1.54483 * 110.50867 * 61.44902 * 15 13 12 18 18 O 1.44428 * 104.89902 * 94.61697 * 17 15 13 19 19 C 1.44688 * 105.13885 * 40.49479 * 18 17 15 20 20 C 1.54477 * 104.83958 * 319.51776 * 19 18 17 21 21 H 1.09000 * 110.51486 * 265.33499 * 20 19 18 22 22 N 1.46902 * 110.51263 * 142.62585 * 20 19 18 23 23 H 1.09005 * 109.47001 * 60.00557 * 1 2 3 24 24 H 1.08997 * 109.46913 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47123 * 300.00291 * 1 2 3 26 26 H 0.96999 * 120.00080 * 180.02562 * 7 6 4 27 27 H 0.97001 * 120.00117 * 94.99459 * 12 2 1 28 28 H 1.09002 * 110.37322 * 213.50211 * 17 15 13 29 29 H 1.08999 * 110.37312 * 335.72887 * 17 15 13 30 30 H 1.08996 * 110.35300 * 200.67684 * 19 18 17 31 31 H 1.08999 * 110.44929 * 78.41250 * 19 18 17 32 32 H 1.00895 * 110.99969 * 65.35538 * 22 20 19 33 33 H 1.00893 * 111.00027 * 189.31339 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.3450 -2.1618 -4.4123 10 1 2.4874 -0.1405 -5.1120 11 1 3.6310 -1.7567 -3.7118 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8589 1.1587 2.4115 15 6 2.6488 -0.7286 3.5878 16 1 1.9758 -1.5420 3.8592 17 6 4.0797 -1.2638 3.3582 18 8 4.9489 -0.2374 3.8844 19 6 4.3091 0.2121 5.1018 20 6 2.8033 0.2647 4.7612 21 1 2.5166 1.2696 4.4512 22 7 1.9998 -0.1692 5.9120 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7090 1.1611 -3.4845 27 1 2.2490 -1.6317 1.1527 28 1 4.2263 -2.1989 3.8987 29 1 4.2644 -1.4085 2.2938 30 1 4.6708 1.2029 5.3766 31 1 4.4908 -0.4952 5.9110 32 1 2.0953 0.4746 6.6830 33 1 1.0311 -0.2834 5.6541 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085373816.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:39 Heat of formation + Delta-G solvation = -87.246376 kcal Electronic energy + Delta-G solvation = -16334.830254 eV Core-core repulsion = 13588.218755 eV Total energy + Delta-G solvation = -2746.611499 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.09586 -37.96818 -34.92815 -34.12495 -32.50240 -30.74009 -28.46356 -27.66162 -25.28323 -23.63150 -21.79681 -20.29342 -19.32636 -17.64858 -16.31086 -16.04122 -15.65039 -15.50277 -15.05798 -14.75961 -14.16786 -14.09857 -13.46557 -12.91891 -12.45026 -12.04224 -11.76404 -11.58917 -11.33541 -11.13097 -11.05933 -10.91923 -10.75278 -10.34561 -10.25732 -9.84591 -9.11193 -9.05922 -8.73825 -8.57346 -7.95736 -6.13812 -4.23297 3.23611 3.26933 3.30946 3.33351 3.91129 4.02874 4.33964 4.43625 4.60588 4.92860 5.15023 5.18774 5.30721 5.41621 5.62867 5.74809 5.75278 5.82315 5.99901 6.67987 6.78983 6.92177 7.04255 7.11728 7.26898 7.41943 7.52647 7.66958 7.88630 8.12435 8.61744 8.75292 9.06866 9.44279 10.92268 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.043732 B = 0.006531 C = 0.006024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.109408 B = 4286.082468 C = 4647.186384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.706 5.706 13 C 0.510 3.490 14 O -0.553 6.553 15 C -0.144 4.144 16 H 0.112 0.888 17 C 0.059 3.941 18 O -0.369 6.369 19 C 0.052 3.948 20 C 0.062 3.938 21 H 0.081 0.919 22 N -0.841 5.841 23 H 0.091 0.909 24 H 0.026 0.974 25 H 0.013 0.987 26 H 0.264 0.736 27 H 0.388 0.612 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.342 0.658 33 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.729 -4.543 12.861 13.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.353 5.353 13 C 0.294 3.706 14 O -0.432 6.432 15 C -0.167 4.167 16 H 0.130 0.870 17 C -0.018 4.018 18 O -0.287 6.287 19 C -0.026 4.026 20 C -0.050 4.050 21 H 0.098 0.902 22 N -0.372 5.372 23 H 0.109 0.891 24 H 0.046 0.954 25 H 0.032 0.968 26 H 0.074 0.926 27 H 0.221 0.779 28 H 0.087 0.913 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.154 0.846 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.110 -4.133 12.597 13.618 hybrid contribution -0.436 -0.143 -0.932 1.039 sum 2.674 -4.276 11.665 12.709 Atomic orbital electron populations 1.22079 0.98471 0.99107 1.00870 1.18764 0.90998 0.94034 0.79987 0.93355 1.21211 1.32493 1.13239 0.90304 0.92030 1.24891 0.94800 0.94928 0.99100 1.69899 1.35916 1.22406 1.23914 0.86433 0.79190 0.79253 0.82140 1.20538 1.21050 1.19805 1.46497 1.64838 1.13488 1.10462 1.20088 0.78464 0.87374 0.84683 1.90623 1.51693 1.16074 1.84832 1.22721 0.99561 0.99662 0.94706 0.86969 1.23369 0.86459 0.91194 1.00799 1.89218 1.45630 1.55042 1.38799 1.23486 0.90589 1.00340 0.88140 1.22722 0.94231 0.98634 0.89403 0.90165 1.58818 1.14630 1.54942 1.08775 0.89093 0.95439 0.96783 0.92552 0.77910 0.91300 0.88313 0.89324 0.91294 0.84558 0.84109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.16 0.34 -3.31 16 2 C 0.26 6.74 2.56 -69.08 -0.18 6.56 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -14.17 8.73 -34.44 -0.30 -14.47 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.99 11.32 55.43 0.63 -24.36 16 8 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 N -0.71 -14.62 4.77 -54.93 -0.26 -14.88 16 13 C 0.51 10.17 7.09 -10.99 -0.08 10.09 16 14 O -0.55 -13.24 14.95 5.55 0.08 -13.15 16 15 C -0.14 -2.14 3.25 -90.20 -0.29 -2.43 16 16 H 0.11 1.44 7.97 -51.93 -0.41 1.03 16 17 C 0.06 0.83 7.13 37.94 0.27 1.10 16 18 O -0.37 -5.85 11.67 -35.23 -0.41 -6.26 16 19 C 0.05 0.67 7.36 37.93 0.28 0.95 16 20 C 0.06 0.85 3.84 -66.15 -0.25 0.60 16 21 H 0.08 1.32 6.51 -51.93 -0.34 0.99 16 22 N -0.84 -8.97 9.18 -3.34 -0.03 -9.00 16 23 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 24 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.39 6.90 8.33 -40.82 -0.34 6.56 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.10 1.43 7.44 -51.93 -0.39 1.04 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16 32 H 0.34 2.96 9.08 -39.29 -0.36 2.61 16 33 H 0.35 3.57 9.02 -39.30 -0.35 3.22 16 LS Contribution 275.95 15.07 4.16 4.16 Total: -1.00 -31.20 275.95 -5.71 -36.91 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -4.55 Total: 10.17 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -0.30 Total: 0.78 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.33 Total: -48.24 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.33 Total: -19.41 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.20 -5.71 -36.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085373816.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.335 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds