Wall clock time and date at job start Mon Mar 30 2020 03:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 111.00249 * 2 1 4 4 H 1.08997 * 110.46190 * 36.15095 * 3 2 1 5 5 C 1.54485 * 110.51272 * 273.54853 * 3 2 1 6 6 O 1.44424 * 104.80262 * 217.38082 * 5 3 2 7 7 C 1.44419 * 105.27818 * 40.50676 * 6 5 3 8 8 C 1.54475 * 104.80424 * 319.48937 * 7 6 5 9 9 H 1.08999 * 110.51127 * 142.62451 * 8 7 6 10 10 C 1.50700 * 110.51219 * 265.33271 * 8 7 6 11 11 O 1.21287 * 119.99697 * 114.64261 * 10 8 7 12 12 N 1.34772 * 119.99953 * 294.64330 * 10 8 7 13 13 C 1.46504 * 119.99569 * 180.02562 * 12 10 8 14 14 C 1.50706 * 109.46853 * 180.02562 * 13 12 10 15 15 H 1.07997 * 119.99968 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99983 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00263 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99988 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46860 * 60.00366 * 18 16 14 20 20 H 1.48500 * 109.46765 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47362 * 300.00048 * 18 16 14 22 22 H 1.09002 * 109.47401 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46874 * 60.00002 * 1 2 3 24 24 H 1.09004 * 109.46970 * 300.00135 * 1 2 3 25 25 H 1.00904 * 111.00313 * 123.95640 * 2 1 3 26 26 H 1.09009 * 110.36668 * 336.20388 * 5 3 2 27 27 H 1.08989 * 110.37427 * 98.42941 * 5 3 2 28 28 H 1.09001 * 110.37137 * 78.32655 * 7 6 5 29 29 H 1.09002 * 110.37238 * 200.54614 * 7 6 5 30 30 H 0.96997 * 120.00152 * 359.97438 * 12 10 8 31 31 H 1.09003 * 109.47410 * 299.99552 * 13 12 10 32 32 H 1.08997 * 109.47781 * 59.99901 * 13 12 10 33 33 H 0.96995 * 120.00734 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 1 1.3623 2.0226 0.6024 5 6 2.1059 1.9088 -1.4441 6 8 3.3171 2.6955 -1.4535 7 6 4.2671 1.9407 -0.6702 8 6 3.4500 1.3929 0.5208 9 1 3.7784 0.3860 0.7783 10 6 3.5713 2.3098 1.7106 11 8 2.5960 2.9022 2.1216 12 7 4.7635 2.4714 2.3180 13 6 4.8812 3.3623 3.4750 14 6 6.3071 3.3663 3.9629 15 1 7.0511 2.7650 3.4615 16 6 6.6619 4.1375 5.0493 17 7 5.7559 4.8694 5.6602 18 14 8.4292 4.1419 5.6545 19 1 9.3229 4.6189 4.5687 20 1 8.5485 5.0450 6.8272 21 1 8.8208 2.7648 6.0489 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 1.8307 -0.5262 0.7814 26 1 2.1844 1.0830 -2.1513 27 1 1.2446 2.5322 -1.6839 28 1 4.6771 1.1199 -1.2587 29 1 5.0680 2.5899 -0.3164 30 1 5.5434 1.9974 1.9895 31 1 4.5938 4.3733 3.1860 32 1 4.2252 3.0119 4.2718 33 1 6.0055 5.4123 6.4242 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085379808.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:14 Heat of formation + Delta-G solvation = -84.960640 kcal Electronic energy + Delta-G solvation = -16051.577005 eV Core-core repulsion = 13305.064623 eV Total energy + Delta-G solvation = -2746.512382 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.19997 -37.94681 -35.54516 -34.24750 -32.46327 -31.15686 -28.66129 -27.13018 -25.02776 -23.75743 -22.36660 -20.88004 -19.57393 -17.51314 -16.44255 -16.18651 -15.62409 -15.48471 -15.03465 -14.84757 -14.30585 -14.13437 -13.56343 -13.43956 -12.80606 -12.38667 -12.05238 -11.93973 -11.69313 -11.31489 -11.23376 -11.03648 -10.95807 -10.86989 -10.35687 -9.87106 -9.45012 -9.08364 -8.77074 -8.60417 -7.95975 -6.19246 -4.26792 3.19998 3.23842 3.28653 3.30050 3.78671 4.00533 4.25898 4.34473 4.45337 4.90659 5.08671 5.16886 5.24373 5.31854 5.33451 5.46866 5.56374 5.70597 5.75781 5.76910 5.78524 5.97964 6.63502 6.93658 7.16436 7.26048 7.35484 7.46930 7.61538 7.93192 8.54419 8.72448 9.00730 9.39825 10.90926 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.046646 B = 0.005556 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.117730 B = 5037.939976 C = 5281.593990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.685 5.685 3 C 0.058 3.942 4 H 0.089 0.911 5 C 0.057 3.943 6 O -0.370 6.370 7 C 0.061 3.939 8 C -0.150 4.150 9 H 0.111 0.889 10 C 0.507 3.493 11 O -0.552 6.552 12 N -0.708 5.708 13 C 0.250 3.750 14 C -0.545 4.545 15 H 0.063 0.937 16 C 0.064 3.936 17 N -0.886 5.886 18 Si 0.905 3.095 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.027 0.973 25 H 0.344 0.656 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.391 0.609 31 H 0.028 0.972 32 H 0.027 0.973 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.941 -9.742 -11.653 15.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.317 5.317 3 C -0.053 4.053 4 H 0.107 0.893 5 C -0.021 4.021 6 O -0.288 6.288 7 C -0.016 4.016 8 C -0.172 4.172 9 H 0.129 0.871 10 C 0.291 3.709 11 O -0.431 6.431 12 N -0.356 5.356 13 C 0.129 3.871 14 C -0.583 4.583 15 H 0.081 0.919 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.201 1.201 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.046 0.954 25 H 0.163 0.837 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.224 0.776 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.570 -9.011 -11.951 15.970 hybrid contribution 1.092 -0.162 1.363 1.754 sum -4.478 -9.173 -10.588 14.708 Atomic orbital electron populations 1.22249 0.87585 1.01780 1.00815 1.60556 1.08156 1.13085 1.49888 1.22985 0.94608 0.90589 0.97097 0.89350 1.23437 0.88124 0.94992 0.95522 1.89156 1.22578 1.44558 1.72521 1.23332 0.92419 0.96183 0.89697 1.22838 0.97199 1.01073 0.96086 0.87096 1.20077 0.84140 0.82726 0.84000 1.90637 1.37546 1.48951 1.65948 1.46430 1.09092 1.47039 1.33038 1.19132 0.97135 0.88888 0.81948 1.21175 0.93849 1.28426 1.14886 0.91896 1.24952 0.98063 0.94849 0.96089 1.69960 1.33663 1.27452 1.21207 0.86459 0.83940 0.78077 0.78348 1.20004 1.21046 1.20062 0.91381 0.91711 0.95388 0.83732 0.91210 0.89406 0.91159 0.88374 0.77642 0.95426 0.95550 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.55 60.07 0.63 0.89 16 2 N -0.68 -7.78 6.63 -112.34 -0.74 -8.53 16 3 C 0.06 0.80 3.01 -66.15 -0.20 0.60 16 4 H 0.09 1.49 6.24 -51.93 -0.32 1.17 16 5 C 0.06 0.74 7.28 37.94 0.28 1.02 16 6 O -0.37 -5.77 11.65 -35.23 -0.41 -6.18 16 7 C 0.06 0.82 7.16 37.93 0.27 1.09 16 8 C -0.15 -2.16 3.18 -90.21 -0.29 -2.44 16 9 H 0.11 1.32 7.62 -51.93 -0.40 0.92 16 10 C 0.51 10.04 7.07 -10.99 -0.08 9.97 16 11 O -0.55 -13.26 15.29 5.55 0.08 -13.18 16 12 N -0.71 -14.68 5.37 -61.47 -0.33 -15.01 16 13 C 0.25 6.59 5.43 -5.19 -0.03 6.56 16 14 C -0.55 -14.67 9.28 -34.44 -0.32 -14.99 16 15 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 18 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 24 H 0.03 0.30 8.08 -51.93 -0.42 -0.12 16 25 H 0.34 3.68 8.26 -39.29 -0.32 3.36 16 26 H 0.07 0.81 8.06 -51.92 -0.42 0.39 16 27 H 0.09 1.06 8.14 -51.94 -0.42 0.64 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.10 1.36 7.72 -51.93 -0.40 0.96 16 30 H 0.39 6.84 8.32 -40.82 -0.34 6.51 16 31 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 280.53 15.07 4.23 4.23 Total: -1.00 -32.12 280.53 -5.98 -38.10 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.69 Total: 5.80 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 0.17 Total: 4.37 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.34 Total: -48.84 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.33 Total: -19.36 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.12 -5.98 -38.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085379808.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.861 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds