Wall clock time and date at job start Mon Mar 30 2020 02:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47104 * 110.98575 * 2 1 4 4 C 1.53103 * 109.20909 * 177.62986 * 3 2 1 5 5 O 1.43012 * 109.29295 * 56.82966 * 4 3 2 6 6 C 1.43020 * 113.73782 * 301.30495 * 5 4 3 7 7 H 1.08996 * 109.51098 * 298.69660 * 6 5 4 8 8 C 1.52998 * 109.50539 * 178.60394 * 6 5 4 9 9 N 1.46503 * 109.47160 * 65.00711 * 8 6 5 10 10 C 1.34770 * 120.00373 * 179.97438 * 9 8 6 11 11 O 1.21690 * 120.00091 * 359.97438 * 10 9 8 12 12 C 1.46373 * 120.00132 * 179.97438 * 10 9 8 13 13 H 1.08001 * 120.00357 * 359.97438 * 12 10 9 14 14 C 1.40051 * 119.99944 * 179.97438 * 12 10 9 15 15 N 1.30668 * 120.00039 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99897 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47430 * 90.00120 * 16 14 12 18 18 H 1.48507 * 109.47323 * 210.00036 * 16 14 12 19 19 H 1.48499 * 109.47527 * 330.00005 * 16 14 12 20 20 C 1.47011 * 110.99678 * 236.34638 * 2 1 3 21 21 H 1.09003 * 109.47173 * 183.65736 * 1 2 3 22 22 H 1.09004 * 109.46843 * 303.65735 * 1 2 3 23 23 H 1.08997 * 109.47328 * 63.65380 * 1 2 3 24 24 H 1.09004 * 109.56899 * 57.68979 * 3 2 1 25 25 H 1.08998 * 109.49713 * 297.52779 * 3 2 1 26 26 H 1.09002 * 109.50635 * 296.87124 * 4 3 2 27 27 H 1.09003 * 109.50698 * 176.78735 * 4 3 2 28 28 H 1.08998 * 109.47106 * 184.99907 * 8 6 5 29 29 H 1.08998 * 109.47543 * 305.00635 * 8 6 5 30 30 H 0.97003 * 119.99843 * 359.97438 * 9 8 6 31 31 H 0.97003 * 119.99865 * 179.97438 * 15 14 12 32 32 H 1.08998 * 109.50606 * 62.45941 * 20 2 1 33 33 H 1.08995 * 109.54395 * 302.34289 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3735 0.0000 4 6 3.5249 1.3264 0.0598 5 8 4.0174 0.5571 -1.0406 6 6 3.5249 -0.7853 -1.0707 7 1 3.8391 -1.3087 -0.1677 8 6 4.0824 -1.5065 -2.2995 9 7 5.5368 -1.6306 -2.1749 10 6 6.2472 -2.2367 -3.1466 11 8 5.6805 -2.6814 -4.1274 12 6 7.7004 -2.3601 -3.0223 13 1 8.2035 -1.9651 -2.1521 14 6 8.4385 -2.9904 -4.0319 15 7 7.8300 -3.4679 -5.0850 16 14 10.2932 -3.1473 -3.8736 17 1 10.6252 -4.4181 -3.1808 18 1 10.9074 -3.1456 -5.2257 19 1 10.8216 -2.0029 -3.0886 20 6 1.9957 -0.7606 -1.1425 21 1 -0.3634 -1.0256 0.0656 22 1 -0.3633 0.5696 0.8554 23 1 -0.3634 0.4561 -0.9209 24 1 1.6140 1.9110 0.8681 25 1 1.6827 1.8832 -0.9112 26 1 3.8385 0.8647 0.9961 27 1 3.9228 2.3397 0.0025 28 1 3.6380 -2.4992 -2.3708 29 1 3.8420 -0.9354 -3.1962 30 1 5.9886 -1.2764 -1.3929 31 1 8.3413 -3.9042 -5.7845 32 1 1.6826 -0.2849 -2.0719 33 1 1.6134 -1.7807 -1.1088 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085790769.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:45 Heat of formation + Delta-G solvation = -79.751971 kcal Electronic energy + Delta-G solvation = -15983.072549 eV Core-core repulsion = 13236.786032 eV Total energy + Delta-G solvation = -2746.286517 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.64215 -37.13077 -35.67743 -33.61786 -32.31795 -30.88154 -28.94112 -26.88738 -25.18502 -24.13644 -22.00816 -20.44304 -19.51399 -17.22936 -16.39125 -16.10369 -15.44539 -15.23523 -14.92587 -14.87276 -13.96379 -13.69108 -13.63410 -13.16336 -12.50965 -12.42309 -12.09259 -12.03730 -11.49344 -11.30878 -11.07773 -10.99801 -10.85463 -10.44257 -10.30844 -10.14747 -9.55436 -8.79397 -8.55594 -7.55411 -7.41256 -6.12446 -4.56991 3.18641 3.25103 3.29079 3.65500 3.87683 4.16335 4.65740 4.66449 4.85989 4.91211 5.11706 5.19948 5.22785 5.33810 5.41647 5.46482 5.60466 5.64354 5.69991 5.80722 5.85213 5.93987 6.38756 6.54659 6.76983 6.77573 7.33797 7.49842 8.01967 8.17278 8.40656 9.08962 9.62340 10.66811 10.85640 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.060010 B = 0.005239 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.474460 B = 5343.545203 C = 5675.728340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.016 3.984 4 C 0.062 3.938 5 O -0.371 6.371 6 C 0.085 3.915 7 H 0.070 0.930 8 C 0.143 3.857 9 N -0.762 5.762 10 C 0.555 3.445 11 O -0.584 6.584 12 C -0.544 4.544 13 H 0.068 0.932 14 C 0.087 3.913 15 N -0.770 5.770 16 Si 0.908 3.092 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.265 1.265 20 C 0.025 3.975 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.026 0.974 24 H 0.083 0.917 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.383 0.617 31 H 0.267 0.733 32 H 0.046 0.954 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.503 7.807 10.989 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.112 4.112 4 C -0.015 4.015 5 O -0.290 6.290 6 C 0.027 3.973 7 H 0.088 0.912 8 C 0.017 3.983 9 N -0.417 5.417 10 C 0.359 3.641 11 O -0.467 6.467 12 C -0.581 4.581 13 H 0.086 0.914 14 C -0.132 4.132 15 N -0.399 5.399 16 Si 0.733 3.267 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.189 1.189 20 C -0.103 4.103 21 H 0.089 0.911 22 H 0.086 0.914 23 H 0.045 0.955 24 H 0.101 0.899 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.114 0.886 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.215 0.785 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.642 7.222 10.357 16.513 hybrid contribution 0.493 0.468 -0.044 0.681 sum -10.149 7.690 10.313 16.386 Atomic orbital electron populations 1.22374 0.87038 1.02430 1.00476 1.62229 1.08094 1.13605 1.42887 1.22845 0.97117 0.89795 1.01438 1.22620 0.91700 0.96638 0.90581 1.88129 1.69648 1.23516 1.47660 1.22484 0.91377 0.83586 0.99838 0.91221 1.20831 0.84838 0.97904 0.94695 1.46002 1.04534 1.65639 1.25550 1.18214 0.87865 0.77075 0.80948 1.90590 1.72133 1.52343 1.31642 1.20887 0.90494 1.40111 1.06640 0.91420 1.25707 0.99845 0.93384 0.94262 1.70029 1.36367 1.27285 1.06189 0.86377 0.83087 0.79223 0.78062 1.19781 1.20511 1.18913 1.22760 0.96128 0.99506 0.91924 0.91106 0.91367 0.95528 0.89893 0.93962 0.92426 0.88568 0.91833 0.92712 0.78530 0.92195 0.93542 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.60 60.06 0.58 0.81 16 2 N -0.54 -6.43 4.99 -242.51 -1.21 -7.64 16 3 C 0.02 0.18 5.67 -3.66 -0.02 0.16 16 4 C 0.06 0.75 7.01 37.21 0.26 1.01 16 5 O -0.37 -6.04 10.42 -35.23 -0.37 -6.41 16 6 C 0.09 1.35 2.84 -26.68 -0.08 1.27 16 7 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 8 C 0.14 2.88 5.35 -4.04 -0.02 2.85 16 9 N -0.76 -17.99 5.50 -61.72 -0.34 -18.33 16 10 C 0.56 16.39 7.75 -12.99 -0.10 16.29 16 11 O -0.58 -19.46 15.02 5.20 0.08 -19.38 16 12 C -0.54 -15.86 9.54 -35.63 -0.34 -16.20 16 13 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 14 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 15 N -0.77 -23.61 11.83 55.55 0.66 -22.95 16 16 Si 0.91 20.57 29.56 -169.99 -5.02 15.54 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 20 C 0.03 0.34 4.95 -3.71 -0.02 0.32 16 21 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.38 8.20 8.45 -40.82 -0.35 7.85 16 31 H 0.27 7.42 8.29 -40.82 -0.34 7.08 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 279.12 15.07 4.21 4.21 Total: -1.00 -35.30 279.12 -6.80 -42.10 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -4.96 Total: 3.95 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 0.16 Total: 8.92 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.89 Total: -48.92 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.29 Total: -25.79 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -35.30 -6.80 -42.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085790769.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.653 kcal (2) G-P(sol) polarization free energy of solvation -35.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds