Wall clock time and date at job start Mon Mar 30 2020 02:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47104 * 110.98575 * 2 1 4 4 C 1.53103 * 109.20909 * 177.62986 * 3 2 1 5 5 O 1.43012 * 109.29295 * 56.82966 * 4 3 2 6 6 C 1.43020 * 113.73782 * 301.30495 * 5 4 3 7 7 H 1.08996 * 109.51098 * 298.69660 * 6 5 4 8 8 C 1.52998 * 109.50539 * 178.60394 * 6 5 4 9 9 N 1.46503 * 109.47160 * 65.00711 * 8 6 5 10 10 C 1.34770 * 120.00373 * 179.97438 * 9 8 6 11 11 O 1.21690 * 120.00091 * 359.97438 * 10 9 8 12 12 C 1.46373 * 120.00132 * 179.97438 * 10 9 8 13 13 H 1.08001 * 120.00357 * 359.97438 * 12 10 9 14 14 C 1.40051 * 119.99944 * 179.97438 * 12 10 9 15 15 N 1.30668 * 120.00039 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99897 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47430 * 90.00120 * 16 14 12 18 18 H 1.48507 * 109.47323 * 210.00036 * 16 14 12 19 19 H 1.48499 * 109.47527 * 330.00005 * 16 14 12 20 20 C 1.47011 * 110.99678 * 236.34638 * 2 1 3 21 21 H 1.09003 * 109.47173 * 183.65736 * 1 2 3 22 22 H 1.09004 * 109.46843 * 303.65735 * 1 2 3 23 23 H 1.08997 * 109.47328 * 63.65380 * 1 2 3 24 24 H 1.09004 * 109.56899 * 57.68979 * 3 2 1 25 25 H 1.08998 * 109.49713 * 297.52779 * 3 2 1 26 26 H 1.09002 * 109.50635 * 296.87124 * 4 3 2 27 27 H 1.09003 * 109.50698 * 176.78735 * 4 3 2 28 28 H 1.08998 * 109.47106 * 184.99907 * 8 6 5 29 29 H 1.08998 * 109.47543 * 305.00635 * 8 6 5 30 30 H 0.97003 * 119.99843 * 359.97438 * 9 8 6 31 31 H 0.97003 * 119.99865 * 179.97438 * 15 14 12 32 32 H 1.08998 * 109.50606 * 62.45941 * 20 2 1 33 33 H 1.08995 * 109.54395 * 302.34289 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3735 0.0000 4 6 3.5249 1.3264 0.0598 5 8 4.0174 0.5571 -1.0406 6 6 3.5249 -0.7853 -1.0707 7 1 3.8391 -1.3087 -0.1677 8 6 4.0824 -1.5065 -2.2995 9 7 5.5368 -1.6306 -2.1749 10 6 6.2472 -2.2367 -3.1466 11 8 5.6805 -2.6814 -4.1274 12 6 7.7004 -2.3601 -3.0223 13 1 8.2035 -1.9651 -2.1521 14 6 8.4385 -2.9904 -4.0319 15 7 7.8300 -3.4679 -5.0850 16 14 10.2932 -3.1473 -3.8736 17 1 10.6252 -4.4181 -3.1808 18 1 10.9074 -3.1456 -5.2257 19 1 10.8216 -2.0029 -3.0886 20 6 1.9957 -0.7606 -1.1425 21 1 -0.3634 -1.0256 0.0656 22 1 -0.3633 0.5696 0.8554 23 1 -0.3634 0.4561 -0.9209 24 1 1.6140 1.9110 0.8681 25 1 1.6827 1.8832 -0.9112 26 1 3.8385 0.8647 0.9961 27 1 3.9228 2.3397 0.0025 28 1 3.6380 -2.4992 -2.3708 29 1 3.8420 -0.9354 -3.1962 30 1 5.9886 -1.2764 -1.3929 31 1 8.3413 -3.9042 -5.7845 32 1 1.6826 -0.2849 -2.0719 33 1 1.6134 -1.7807 -1.1088 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085790769.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:44 Heat of formation + Delta-G solvation = -109.225504 kcal Electronic energy + Delta-G solvation = -15984.350617 eV Core-core repulsion = 13236.786032 eV Total energy + Delta-G solvation = -2747.564585 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.77944 -39.22803 -36.76004 -35.41958 -34.48473 -32.38339 -29.96801 -28.75434 -26.78213 -25.06835 -23.37175 -21.80593 -21.32669 -19.25412 -17.60159 -17.52148 -17.08281 -16.72184 -16.07932 -15.94522 -15.64928 -15.29862 -15.03630 -14.70982 -14.23316 -13.53118 -13.31864 -13.21509 -13.09037 -12.87858 -12.70350 -12.61631 -12.34734 -12.11217 -11.99124 -11.52848 -10.92190 -10.67699 -9.88144 -9.50773 -9.45460 -8.28554 -6.85082 1.41382 1.43414 1.58842 2.26021 2.47122 2.65347 2.76798 3.17077 3.62723 3.88315 3.89372 3.96467 4.02719 4.20866 4.37026 4.48543 4.59440 4.62232 4.65527 4.67391 4.82487 4.91581 4.97672 5.02192 5.32762 5.82870 5.88143 5.93810 6.16955 6.23518 6.28620 6.87208 7.54107 8.48783 8.67816 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.060010 B = 0.005239 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.474460 B = 5343.545203 C = 5675.728340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.550 5.550 3 C 0.018 3.982 4 C 0.055 3.945 5 O -0.400 6.400 6 C 0.100 3.900 7 H 0.077 0.923 8 C 0.144 3.856 9 N -0.750 5.750 10 C 0.536 3.464 11 O -0.634 6.634 12 C -0.574 4.574 13 H 0.087 0.913 14 C 0.028 3.972 15 N -0.823 5.823 16 Si 1.001 2.999 17 H -0.260 1.260 18 H -0.272 1.272 19 H -0.250 1.250 20 C 0.031 3.969 21 H 0.076 0.924 22 H 0.087 0.913 23 H 0.026 0.974 24 H 0.111 0.889 25 H 0.036 0.964 26 H 0.065 0.935 27 H 0.115 0.885 28 H 0.060 0.940 29 H 0.031 0.969 30 H 0.395 0.605 31 H 0.275 0.725 32 H 0.037 0.963 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.928 8.623 12.932 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.275 5.275 3 C -0.110 4.110 4 C -0.021 4.021 5 O -0.320 6.320 6 C 0.041 3.959 7 H 0.094 0.906 8 C 0.019 3.981 9 N -0.404 5.404 10 C 0.340 3.660 11 O -0.522 6.522 12 C -0.610 4.610 13 H 0.105 0.895 14 C -0.187 4.187 15 N -0.452 5.452 16 Si 0.820 3.180 17 H -0.184 1.184 18 H -0.197 1.197 19 H -0.173 1.173 20 C -0.098 4.098 21 H 0.095 0.905 22 H 0.106 0.894 23 H 0.045 0.955 24 H 0.130 0.870 25 H 0.054 0.946 26 H 0.083 0.917 27 H 0.133 0.867 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.229 0.771 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.102 8.076 12.363 17.892 hybrid contribution 0.233 0.275 -0.606 0.705 sum -9.869 8.352 11.757 17.475 Atomic orbital electron populations 1.22459 0.85279 1.03283 1.01331 1.62260 1.09677 1.13996 1.41569 1.22894 0.96197 0.89505 1.02428 1.22905 0.92762 0.96972 0.89469 1.88072 1.70557 1.23641 1.49711 1.22197 0.92818 0.83494 0.97354 0.90556 1.20901 0.82820 0.98146 0.96263 1.45696 1.06036 1.64097 1.24583 1.18647 0.88855 0.77198 0.81251 1.90541 1.73159 1.54653 1.33838 1.21433 0.90847 1.40838 1.07889 0.89494 1.27009 1.06467 0.92030 0.93195 1.70193 1.39441 1.28139 1.07464 0.84978 0.74442 0.80015 0.78564 1.18403 1.19723 1.17298 1.22622 0.94246 1.00466 0.92417 0.90519 0.89416 0.95539 0.87048 0.94587 0.91692 0.86686 0.92234 0.95027 0.77130 0.91525 0.94522 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.60 127.69 1.23 1.61 16 2 N -0.55 -11.81 4.99 -921.18 -4.59 -16.40 16 3 C 0.02 0.34 5.67 86.30 0.49 0.83 16 4 C 0.06 1.22 7.01 72.02 0.50 1.72 16 5 O -0.40 -12.76 10.42 -148.98 -1.55 -14.31 16 6 C 0.10 3.11 2.84 30.63 0.09 3.20 16 7 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 8 C 0.14 5.96 5.35 86.38 0.46 6.42 16 9 N -0.75 -36.15 5.50 -467.42 -2.57 -38.72 16 10 C 0.54 32.60 7.75 86.36 0.67 33.26 16 11 O -0.63 -44.09 15.02 -4.32 -0.06 -44.16 16 12 C -0.57 -33.69 9.54 24.83 0.24 -33.45 16 13 H 0.09 4.59 7.85 -2.91 -0.02 4.57 16 14 C 0.03 1.59 5.50 85.31 0.47 2.06 16 15 N -0.82 -51.58 11.83 21.84 0.26 -51.32 16 16 Si 1.00 41.79 29.56 68.60 2.03 43.82 16 17 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 18 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 19 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 20 C 0.03 0.81 4.95 86.32 0.43 1.24 16 21 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 23 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 24 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 25 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.40 16.94 8.45 -92.71 -0.78 16.16 16 31 H 0.27 15.53 8.29 -92.71 -0.77 14.76 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -78.25 279.12 -1.61 -79.86 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.31 Total: 24.34 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 4.57 Total: 16.89 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -6.91 Total: -106.44 kcal Atomic # 8 Polarization: -56.85 SS G_CDS: -1.62 Total: -58.47 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -78.25 -1.61 -79.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085790769.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.369 kcal (2) G-P(sol) polarization free energy of solvation -78.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds