Wall clock time and date at job start Mon Mar 30 2020 02:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47213 * 2 1 4 4 C 1.37199 * 119.99652 * 280.25490 * 3 2 1 5 5 H 1.08000 * 119.99617 * 158.45584 * 4 3 2 6 6 C 1.38872 * 120.00378 * 338.46474 * 4 3 2 7 7 N 1.31480 * 119.99869 * 35.22462 * 6 4 3 8 8 Si 1.86790 * 120.00055 * 215.22699 * 6 4 3 9 9 H 1.48506 * 109.47302 * 89.99944 * 8 6 4 10 10 H 1.48508 * 109.47360 * 209.99732 * 8 6 4 11 11 H 1.48497 * 109.47443 * 329.99730 * 8 6 4 12 12 C 1.34776 * 120.00195 * 100.26034 * 3 2 1 13 13 O 1.21586 * 119.99565 * 176.89250 * 12 3 2 14 14 N 1.34772 * 120.00133 * 356.88387 * 12 3 2 15 15 C 1.47164 * 120.93955 * 149.60521 * 14 12 3 16 16 C 1.53297 * 108.37758 * 230.51965 * 15 14 12 17 17 O 1.42968 * 109.26378 * 307.77713 * 16 15 14 18 18 C 1.42962 * 114.16581 * 62.55341 * 17 16 15 19 19 C 1.47152 * 120.98255 * 329.67589 * 14 12 3 20 20 H 1.08995 * 109.47101 * 90.12562 * 1 2 3 21 21 H 1.09001 * 109.47300 * 210.12346 * 1 2 3 22 22 H 1.08998 * 109.47347 * 330.12691 * 1 2 3 23 23 H 1.09001 * 109.47655 * 239.99665 * 2 1 3 24 24 H 1.09005 * 109.47353 * 119.99721 * 2 1 3 25 25 H 0.97005 * 119.99911 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.64743 * 110.82844 * 15 14 12 27 27 H 1.09002 * 109.73321 * 350.26499 * 15 14 12 28 28 H 1.08998 * 109.51538 * 187.82801 * 16 15 14 29 29 H 1.08997 * 109.51541 * 67.72268 * 16 15 14 30 30 H 1.09007 * 109.51446 * 57.34196 * 18 17 16 31 31 H 1.08999 * 109.51273 * 177.44348 * 18 17 16 32 32 H 1.09003 * 109.68039 * 9.70967 * 19 14 12 33 33 H 1.08992 * 109.67960 * 249.15033 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0475 2.0984 -1.1692 5 1 2.0645 3.1779 -1.1402 6 6 2.0550 1.4364 -2.3900 7 7 1.3820 0.3162 -2.5345 8 14 3.0213 2.1374 -3.8267 9 1 4.4035 1.5947 -3.8055 10 1 2.3598 1.7572 -5.1008 11 1 3.0689 3.6175 -3.7162 12 6 2.4389 1.9473 1.1485 13 8 2.8969 3.0736 1.1390 14 7 2.3518 1.2650 2.3075 15 6 3.3205 1.4897 3.3924 16 6 3.8644 0.1295 3.8440 17 8 2.7700 -0.7418 4.1390 18 6 1.9308 -1.0278 3.0175 19 6 1.2868 0.2730 2.5243 20 1 -0.3633 -0.0023 -1.0276 21 1 -0.3634 -0.8889 0.5157 22 1 -0.3634 0.8911 0.5118 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.3875 -0.1464 -3.3871 26 1 2.8258 1.9833 4.2289 27 1 4.1399 2.1112 3.0313 28 1 4.4765 0.2602 4.7364 29 1 4.4698 -0.3032 3.0476 30 1 2.5287 -1.4643 2.2173 31 1 1.1524 -1.7303 3.3150 32 1 0.7597 0.0897 1.5880 33 1 0.5873 0.6433 3.2736 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085963150.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:04 Heat of formation + Delta-G solvation = -0.607854 kcal Electronic energy + Delta-G solvation = -17287.698602 eV Core-core repulsion = 14544.844031 eV Total energy + Delta-G solvation = -2742.854571 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.08179 -37.81176 -35.48694 -34.09603 -32.08361 -30.81375 -29.60670 -27.18839 -24.75956 -23.68537 -22.11983 -21.41434 -19.04323 -17.06674 -16.69371 -15.92288 -15.67529 -15.04725 -14.70152 -14.61284 -14.42767 -13.60065 -13.43853 -12.84261 -12.63715 -12.06447 -11.82726 -11.47913 -11.17278 -11.09265 -10.91426 -10.75152 -10.38004 -10.25342 -10.06316 -9.84433 -9.57062 -8.74717 -8.55827 -7.89032 -7.71499 -6.41089 -3.68340 3.21399 3.32131 3.35637 3.60880 4.03914 4.13781 4.30301 4.96310 5.12129 5.18389 5.28848 5.37691 5.51240 5.56378 5.65836 5.82825 5.96446 6.10790 6.22669 6.27225 6.44532 6.52510 6.55696 7.24745 7.28251 7.32747 7.45811 7.69510 7.71658 8.40613 8.70755 9.23878 9.54427 10.13931 10.62709 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.037193 B = 0.009494 C = 0.008409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.640054 B = 2948.617443 C = 3328.895611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.080 3.920 3 N -0.461 5.461 4 C -0.305 4.305 5 H 0.100 0.900 6 C 0.044 3.956 7 N -0.857 5.857 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.270 1.270 12 C 0.663 3.337 13 O -0.615 6.615 14 N -0.651 5.651 15 C 0.108 3.892 16 C 0.046 3.954 17 O -0.386 6.386 18 C 0.045 3.955 19 C 0.030 3.970 20 H 0.087 0.913 21 H 0.036 0.964 22 H 0.041 0.959 23 H 0.115 0.885 24 H 0.053 0.947 25 H 0.266 0.734 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.146 0.854 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.267 -5.753 7.566 9.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.043 4.043 3 N -0.184 5.184 4 C -0.432 4.432 5 H 0.118 0.882 6 C -0.159 4.159 7 N -0.496 5.496 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.215 1.215 11 H -0.195 1.195 12 C 0.368 3.632 13 O -0.497 6.497 14 N -0.393 5.393 15 C -0.016 4.016 16 C -0.031 4.031 17 O -0.305 6.305 18 C -0.032 4.032 19 C -0.093 4.093 20 H 0.106 0.894 21 H 0.055 0.945 22 H 0.060 0.940 23 H 0.133 0.867 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.107 0.893 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.163 0.837 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.413 -5.334 7.520 9.229 hybrid contribution 0.335 0.278 -0.908 1.006 sum 0.747 -5.057 6.613 8.358 Atomic orbital electron populations 1.22137 0.97345 0.98345 1.03683 1.22636 0.93711 0.85173 1.02806 1.43163 1.58231 1.11722 1.05323 1.19344 1.50127 0.92233 0.81473 0.88233 1.25139 0.96243 0.96020 0.98539 1.70086 1.34567 1.19408 1.25495 0.86322 0.80850 0.79959 0.80011 1.20524 1.21456 1.19457 1.15747 0.83375 0.84315 0.79792 1.90710 1.55273 1.18165 1.85549 1.46864 1.32027 1.45474 1.14940 1.21830 0.93266 0.96458 0.90075 1.23028 0.88751 0.90361 1.01001 1.87874 1.40920 1.67015 1.34674 1.23070 0.94203 0.96782 0.89183 1.23544 0.91346 0.88830 1.05578 0.89405 0.94468 0.94036 0.86744 0.92954 0.92367 0.92275 0.89266 0.88381 0.92959 0.92501 0.88410 0.83676 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 8.21 37.15 0.31 -2.82 16 2 C 0.08 1.75 4.82 -4.04 -0.02 1.73 16 3 N -0.46 -11.87 2.59 -123.33 -0.32 -12.19 16 4 C -0.30 -8.50 9.08 -14.91 -0.14 -8.64 16 5 H 0.10 2.97 7.59 -52.49 -0.40 2.57 16 6 C 0.04 1.14 5.19 -17.47 -0.09 1.05 16 7 N -0.86 -21.56 8.91 55.49 0.49 -21.06 16 8 Si 0.90 20.68 29.67 -169.99 -5.04 15.64 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 C 0.66 16.95 7.75 -86.92 -0.67 16.27 16 13 O -0.62 -17.84 16.04 5.29 0.08 -17.76 16 14 N -0.65 -13.44 2.85 -177.99 -0.51 -13.95 16 15 C 0.11 1.88 6.53 -3.53 -0.02 1.85 16 16 C 0.05 0.67 6.98 37.31 0.26 0.93 16 17 O -0.39 -5.98 10.74 -35.23 -0.38 -6.36 16 18 C 0.05 0.67 6.56 37.31 0.24 0.91 16 19 C 0.03 0.52 5.58 -3.53 -0.02 0.50 16 20 H 0.09 1.93 6.78 -51.93 -0.35 1.58 16 21 H 0.04 0.59 7.91 -51.93 -0.41 0.18 16 22 H 0.04 0.86 7.59 -51.93 -0.39 0.46 16 23 H 0.12 2.75 5.47 -51.93 -0.28 2.47 16 24 H 0.05 1.02 3.08 -51.93 -0.16 0.86 16 25 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.09 1.62 7.56 -51.93 -0.39 1.22 16 28 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.86 6.86 -51.92 -0.36 0.50 16 31 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.15 2.62 1.27 -61.42 -0.08 2.54 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 255.97 15.07 3.86 3.86 Total: -1.00 -30.79 255.97 -6.04 -36.83 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.07 Total: 3.21 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: -0.15 Total: 11.79 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.33 Total: -47.20 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.29 Total: -24.12 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.04 Total: 15.64 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.79 -6.04 -36.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085963150.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.219 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds