Wall clock time and date at job start Mon Mar 30 2020 02:55:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 N 1.46501 * 109.47213 * 2 1
4 4 C 1.37199 * 119.99652 * 280.25490 * 3 2 1
5 5 H 1.08000 * 119.99617 * 158.45584 * 4 3 2
6 6 C 1.38872 * 120.00378 * 338.46474 * 4 3 2
7 7 N 1.31480 * 119.99869 * 35.22462 * 6 4 3
8 8 Si 1.86790 * 120.00055 * 215.22699 * 6 4 3
9 9 H 1.48506 * 109.47302 * 89.99944 * 8 6 4
10 10 H 1.48508 * 109.47360 * 209.99732 * 8 6 4
11 11 H 1.48497 * 109.47443 * 329.99730 * 8 6 4
12 12 C 1.34776 * 120.00195 * 100.26034 * 3 2 1
13 13 O 1.21586 * 119.99565 * 176.89250 * 12 3 2
14 14 N 1.34772 * 120.00133 * 356.88387 * 12 3 2
15 15 C 1.47164 * 120.93955 * 149.60521 * 14 12 3
16 16 C 1.53297 * 108.37758 * 230.51965 * 15 14 12
17 17 O 1.42968 * 109.26378 * 307.77713 * 16 15 14
18 18 C 1.42962 * 114.16581 * 62.55341 * 17 16 15
19 19 C 1.47152 * 120.98255 * 329.67589 * 14 12 3
20 20 H 1.08995 * 109.47101 * 90.12562 * 1 2 3
21 21 H 1.09001 * 109.47300 * 210.12346 * 1 2 3
22 22 H 1.08998 * 109.47347 * 330.12691 * 1 2 3
23 23 H 1.09001 * 109.47655 * 239.99665 * 2 1 3
24 24 H 1.09005 * 109.47353 * 119.99721 * 2 1 3
25 25 H 0.97005 * 119.99911 * 180.02562 * 7 6 4
26 26 H 1.09000 * 109.64743 * 110.82844 * 15 14 12
27 27 H 1.09002 * 109.73321 * 350.26499 * 15 14 12
28 28 H 1.08998 * 109.51538 * 187.82801 * 16 15 14
29 29 H 1.08997 * 109.51541 * 67.72268 * 16 15 14
30 30 H 1.09007 * 109.51446 * 57.34196 * 18 17 16
31 31 H 1.08999 * 109.51273 * 177.44348 * 18 17 16
32 32 H 1.09003 * 109.68039 * 9.70967 * 19 14 12
33 33 H 1.08992 * 109.67960 * 249.15033 * 19 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.0475 2.0984 -1.1692
5 1 2.0645 3.1779 -1.1402
6 6 2.0550 1.4364 -2.3900
7 7 1.3820 0.3162 -2.5345
8 14 3.0213 2.1374 -3.8267
9 1 4.4035 1.5947 -3.8055
10 1 2.3598 1.7572 -5.1008
11 1 3.0689 3.6175 -3.7162
12 6 2.4389 1.9473 1.1485
13 8 2.8969 3.0736 1.1390
14 7 2.3518 1.2650 2.3075
15 6 3.3205 1.4897 3.3924
16 6 3.8644 0.1295 3.8440
17 8 2.7700 -0.7418 4.1390
18 6 1.9308 -1.0278 3.0175
19 6 1.2868 0.2730 2.5243
20 1 -0.3633 -0.0023 -1.0276
21 1 -0.3634 -0.8889 0.5157
22 1 -0.3634 0.8911 0.5118
23 1 1.8934 -0.5139 -0.8899
24 1 1.8933 -0.5138 0.8900
25 1 1.3875 -0.1464 -3.3871
26 1 2.8258 1.9833 4.2289
27 1 4.1399 2.1112 3.0313
28 1 4.4765 0.2602 4.7364
29 1 4.4698 -0.3032 3.0476
30 1 2.5287 -1.4643 2.2173
31 1 1.1524 -1.7303 3.3150
32 1 0.7597 0.0897 1.5880
33 1 0.5873 0.6433 3.2736
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000085963150.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:55:04
Heat of formation + Delta-G solvation = -0.607854 kcal
Electronic energy + Delta-G solvation = -17287.698602 eV
Core-core repulsion = 14544.844031 eV
Total energy + Delta-G solvation = -2742.854571 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 228.126 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.08179 -37.81176 -35.48694 -34.09603 -32.08361 -30.81375 -29.60670 -27.18839
-24.75956 -23.68537 -22.11983 -21.41434 -19.04323 -17.06674 -16.69371 -15.92288
-15.67529 -15.04725 -14.70152 -14.61284 -14.42767 -13.60065 -13.43853 -12.84261
-12.63715 -12.06447 -11.82726 -11.47913 -11.17278 -11.09265 -10.91426 -10.75152
-10.38004 -10.25342 -10.06316 -9.84433 -9.57062 -8.74717 -8.55827 -7.89032
-7.71499 -6.41089 -3.68340 3.21399 3.32131 3.35637 3.60880 4.03914
4.13781 4.30301 4.96310 5.12129 5.18389 5.28848 5.37691 5.51240
5.56378 5.65836 5.82825 5.96446 6.10790 6.22669 6.27225 6.44532
6.52510 6.55696 7.24745 7.28251 7.32747 7.45811 7.69510 7.71658
8.40613 8.70755 9.23878 9.54427 10.13931 10.62709
Molecular weight = 228.13amu
Principal moments of inertia in cm(-1)
A = 0.037193 B = 0.009494 C = 0.008409
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 752.640054 B = 2948.617443 C = 3328.895611
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.080 3.920
3 N -0.461 5.461
4 C -0.305 4.305
5 H 0.100 0.900
6 C 0.044 3.956
7 N -0.857 5.857
8 Si 0.902 3.098
9 H -0.279 1.279
10 H -0.288 1.288
11 H -0.270 1.270
12 C 0.663 3.337
13 O -0.615 6.615
14 N -0.651 5.651
15 C 0.108 3.892
16 C 0.046 3.954
17 O -0.386 6.386
18 C 0.045 3.955
19 C 0.030 3.970
20 H 0.087 0.913
21 H 0.036 0.964
22 H 0.041 0.959
23 H 0.115 0.885
24 H 0.053 0.947
25 H 0.266 0.734
26 H 0.059 0.941
27 H 0.089 0.911
28 H 0.098 0.902
29 H 0.052 0.948
30 H 0.057 0.943
31 H 0.098 0.902
32 H 0.146 0.854
33 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.267 -5.753 7.566 9.508
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C -0.043 4.043
3 N -0.184 5.184
4 C -0.432 4.432
5 H 0.118 0.882
6 C -0.159 4.159
7 N -0.496 5.496
8 Si 0.729 3.271
9 H -0.205 1.205
10 H -0.215 1.215
11 H -0.195 1.195
12 C 0.368 3.632
13 O -0.497 6.497
14 N -0.393 5.393
15 C -0.016 4.016
16 C -0.031 4.031
17 O -0.305 6.305
18 C -0.032 4.032
19 C -0.093 4.093
20 H 0.106 0.894
21 H 0.055 0.945
22 H 0.060 0.940
23 H 0.133 0.867
24 H 0.070 0.930
25 H 0.076 0.924
26 H 0.077 0.923
27 H 0.107 0.893
28 H 0.116 0.884
29 H 0.070 0.930
30 H 0.075 0.925
31 H 0.116 0.884
32 H 0.163 0.837
33 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 0.413 -5.334 7.520 9.229
hybrid contribution 0.335 0.278 -0.908 1.006
sum 0.747 -5.057 6.613 8.358
Atomic orbital electron populations
1.22137 0.97345 0.98345 1.03683 1.22636 0.93711 0.85173 1.02806
1.43163 1.58231 1.11722 1.05323 1.19344 1.50127 0.92233 0.81473
0.88233 1.25139 0.96243 0.96020 0.98539 1.70086 1.34567 1.19408
1.25495 0.86322 0.80850 0.79959 0.80011 1.20524 1.21456 1.19457
1.15747 0.83375 0.84315 0.79792 1.90710 1.55273 1.18165 1.85549
1.46864 1.32027 1.45474 1.14940 1.21830 0.93266 0.96458 0.90075
1.23028 0.88751 0.90361 1.01001 1.87874 1.40920 1.67015 1.34674
1.23070 0.94203 0.96782 0.89183 1.23544 0.91346 0.88830 1.05578
0.89405 0.94468 0.94036 0.86744 0.92954 0.92367 0.92275 0.89266
0.88381 0.92959 0.92501 0.88410 0.83676 0.92776
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.12 8.21 37.15 0.31 -2.82 16
2 C 0.08 1.75 4.82 -4.04 -0.02 1.73 16
3 N -0.46 -11.87 2.59 -123.33 -0.32 -12.19 16
4 C -0.30 -8.50 9.08 -14.91 -0.14 -8.64 16
5 H 0.10 2.97 7.59 -52.49 -0.40 2.57 16
6 C 0.04 1.14 5.19 -17.47 -0.09 1.05 16
7 N -0.86 -21.56 8.91 55.49 0.49 -21.06 16
8 Si 0.90 20.68 29.67 -169.99 -5.04 15.64 16
9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
10 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16
11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16
12 C 0.66 16.95 7.75 -86.92 -0.67 16.27 16
13 O -0.62 -17.84 16.04 5.29 0.08 -17.76 16
14 N -0.65 -13.44 2.85 -177.99 -0.51 -13.95 16
15 C 0.11 1.88 6.53 -3.53 -0.02 1.85 16
16 C 0.05 0.67 6.98 37.31 0.26 0.93 16
17 O -0.39 -5.98 10.74 -35.23 -0.38 -6.36 16
18 C 0.05 0.67 6.56 37.31 0.24 0.91 16
19 C 0.03 0.52 5.58 -3.53 -0.02 0.50 16
20 H 0.09 1.93 6.78 -51.93 -0.35 1.58 16
21 H 0.04 0.59 7.91 -51.93 -0.41 0.18 16
22 H 0.04 0.86 7.59 -51.93 -0.39 0.46 16
23 H 0.12 2.75 5.47 -51.93 -0.28 2.47 16
24 H 0.05 1.02 3.08 -51.93 -0.16 0.86 16
25 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16
26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
27 H 0.09 1.62 7.56 -51.93 -0.39 1.22 16
28 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16
29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
30 H 0.06 0.86 6.86 -51.92 -0.36 0.50 16
31 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16
32 H 0.15 2.62 1.27 -61.42 -0.08 2.54 16
33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16
LS Contribution 255.97 15.07 3.86 3.86
Total: -1.00 -30.79 255.97 -6.04 -36.83
By element:
Atomic # 1 Polarization: 7.29 SS G_CDS: -4.07 Total: 3.21 kcal
Atomic # 6 Polarization: 11.94 SS G_CDS: -0.15 Total: 11.79 kcal
Atomic # 7 Polarization: -46.87 SS G_CDS: -0.33 Total: -47.20 kcal
Atomic # 8 Polarization: -23.83 SS G_CDS: -0.29 Total: -24.12 kcal
Atomic # 14 Polarization: 20.68 SS G_CDS: -5.04 Total: 15.64 kcal
Total LS contribution 3.86 Total: 3.86 kcal
Total: -30.79 -6.04 -36.83 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000085963150.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.219 kcal
(2) G-P(sol) polarization free energy of solvation -30.788 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.431 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.039 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.827 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.608 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds