Wall clock time and date at job start Mon Mar 30 2020 02:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47213 * 2 1 4 4 C 1.37199 * 119.99652 * 280.25490 * 3 2 1 5 5 H 1.08000 * 119.99617 * 158.45584 * 4 3 2 6 6 C 1.38872 * 120.00378 * 338.46474 * 4 3 2 7 7 N 1.31480 * 119.99869 * 35.22462 * 6 4 3 8 8 Si 1.86790 * 120.00055 * 215.22699 * 6 4 3 9 9 H 1.48506 * 109.47302 * 89.99944 * 8 6 4 10 10 H 1.48508 * 109.47360 * 209.99732 * 8 6 4 11 11 H 1.48497 * 109.47443 * 329.99730 * 8 6 4 12 12 C 1.34776 * 120.00195 * 100.26034 * 3 2 1 13 13 O 1.21586 * 119.99565 * 176.89250 * 12 3 2 14 14 N 1.34772 * 120.00133 * 356.88387 * 12 3 2 15 15 C 1.47164 * 120.93955 * 149.60521 * 14 12 3 16 16 C 1.53297 * 108.37758 * 230.51965 * 15 14 12 17 17 O 1.42968 * 109.26378 * 307.77713 * 16 15 14 18 18 C 1.42962 * 114.16581 * 62.55341 * 17 16 15 19 19 C 1.47152 * 120.98255 * 329.67589 * 14 12 3 20 20 H 1.08995 * 109.47101 * 90.12562 * 1 2 3 21 21 H 1.09001 * 109.47300 * 210.12346 * 1 2 3 22 22 H 1.08998 * 109.47347 * 330.12691 * 1 2 3 23 23 H 1.09001 * 109.47655 * 239.99665 * 2 1 3 24 24 H 1.09005 * 109.47353 * 119.99721 * 2 1 3 25 25 H 0.97005 * 119.99911 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.64743 * 110.82844 * 15 14 12 27 27 H 1.09002 * 109.73321 * 350.26499 * 15 14 12 28 28 H 1.08998 * 109.51538 * 187.82801 * 16 15 14 29 29 H 1.08997 * 109.51541 * 67.72268 * 16 15 14 30 30 H 1.09007 * 109.51446 * 57.34196 * 18 17 16 31 31 H 1.08999 * 109.51273 * 177.44348 * 18 17 16 32 32 H 1.09003 * 109.68039 * 9.70967 * 19 14 12 33 33 H 1.08992 * 109.67960 * 249.15033 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0475 2.0984 -1.1692 5 1 2.0645 3.1779 -1.1402 6 6 2.0550 1.4364 -2.3900 7 7 1.3820 0.3162 -2.5345 8 14 3.0213 2.1374 -3.8267 9 1 4.4035 1.5947 -3.8055 10 1 2.3598 1.7572 -5.1008 11 1 3.0689 3.6175 -3.7162 12 6 2.4389 1.9473 1.1485 13 8 2.8969 3.0736 1.1390 14 7 2.3518 1.2650 2.3075 15 6 3.3205 1.4897 3.3924 16 6 3.8644 0.1295 3.8440 17 8 2.7700 -0.7418 4.1390 18 6 1.9308 -1.0278 3.0175 19 6 1.2868 0.2730 2.5243 20 1 -0.3633 -0.0023 -1.0276 21 1 -0.3634 -0.8889 0.5157 22 1 -0.3634 0.8911 0.5118 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.3875 -0.1464 -3.3871 26 1 2.8258 1.9833 4.2289 27 1 4.1399 2.1112 3.0313 28 1 4.4765 0.2602 4.7364 29 1 4.4698 -0.3032 3.0476 30 1 2.5287 -1.4643 2.2173 31 1 1.1524 -1.7303 3.3150 32 1 0.7597 0.0897 1.5880 33 1 0.5873 0.6433 3.2736 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085963150.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:04 Heat of formation + Delta-G solvation = -21.638004 kcal Electronic energy + Delta-G solvation = -17288.610537 eV Core-core repulsion = 14544.844031 eV Total energy + Delta-G solvation = -2743.766506 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.71424 -39.30232 -37.40199 -35.70047 -33.87294 -32.47162 -31.20470 -28.72307 -26.59944 -25.01007 -23.85234 -22.93693 -20.68104 -18.93595 -18.41029 -17.44631 -17.20535 -16.52255 -16.30527 -16.17908 -16.02619 -15.29572 -15.09050 -14.66585 -14.19619 -13.67725 -13.39161 -13.20789 -12.90640 -12.71825 -12.30923 -12.25887 -12.21327 -12.06954 -11.53193 -11.42884 -11.09184 -10.69416 -10.51791 -9.84341 -9.30155 -8.40968 -5.74527 1.35321 1.43455 1.52146 1.97334 2.22462 2.42381 2.90266 2.97120 3.42117 3.84193 4.07000 4.07824 4.14603 4.29619 4.39619 4.58872 4.67197 4.71883 4.77638 4.83005 4.92363 4.97747 5.05124 5.43711 5.58875 5.72122 5.84816 5.97360 6.12118 6.39717 6.77120 7.23104 7.61288 8.18315 8.60494 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.037193 B = 0.009494 C = 0.008409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.640054 B = 2948.617443 C = 3328.895611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.081 3.919 3 N -0.470 5.470 4 C -0.350 4.350 5 H 0.063 0.937 6 C 0.024 3.976 7 N -0.852 5.852 8 Si 0.960 3.040 9 H -0.277 1.277 10 H -0.270 1.270 11 H -0.282 1.282 12 C 0.651 3.349 13 O -0.666 6.666 14 N -0.653 5.653 15 C 0.101 3.899 16 C 0.055 3.945 17 O -0.388 6.388 18 C 0.049 3.951 19 C 0.024 3.976 20 H 0.064 0.936 21 H 0.083 0.917 22 H 0.027 0.973 23 H 0.095 0.905 24 H 0.081 0.919 25 H 0.275 0.725 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.135 0.865 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.126 -7.918 8.186 11.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.041 4.041 3 N -0.193 5.193 4 C -0.477 4.477 5 H 0.081 0.919 6 C -0.181 4.181 7 N -0.488 5.488 8 Si 0.784 3.216 9 H -0.203 1.203 10 H -0.195 1.195 11 H -0.207 1.207 12 C 0.356 3.644 13 O -0.552 6.552 14 N -0.394 5.394 15 C -0.022 4.022 16 C -0.022 4.022 17 O -0.306 6.306 18 C -0.028 4.028 19 C -0.098 4.098 20 H 0.083 0.917 21 H 0.101 0.899 22 H 0.046 0.954 23 H 0.112 0.888 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.152 0.848 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.243 -7.569 8.158 11.131 hybrid contribution 0.339 0.931 -1.101 1.481 sum 0.582 -6.638 7.057 9.706 Atomic orbital electron populations 1.21975 0.95728 0.99850 1.02631 1.22701 0.95031 0.83198 1.03141 1.43270 1.58364 1.12796 1.04895 1.19091 1.54118 0.91160 0.83339 0.91894 1.25665 0.95825 0.96662 0.99934 1.70126 1.33053 1.19258 1.26403 0.85483 0.79498 0.78581 0.77999 1.20266 1.19493 1.20734 1.16088 0.83007 0.84238 0.81107 1.90648 1.57410 1.20508 1.86619 1.46910 1.33177 1.45424 1.13933 1.22078 0.92396 0.98568 0.89191 1.23068 0.88581 0.88074 1.02492 1.87887 1.41059 1.66800 1.34887 1.23155 0.94897 0.95560 0.89161 1.23721 0.90902 0.89526 1.05649 0.91738 0.89863 0.95428 0.88753 0.90113 0.91474 0.91231 0.90934 0.84766 0.93266 0.92700 0.84711 0.84439 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.54 8.21 71.98 0.59 -4.95 16 2 C 0.08 3.51 4.82 86.38 0.42 3.93 16 3 N -0.47 -24.78 2.59 -662.37 -1.72 -26.49 16 4 C -0.35 -20.25 9.08 84.01 0.76 -19.49 16 5 H 0.06 4.01 7.59 -2.91 -0.02 3.99 16 6 C 0.02 1.24 5.19 84.90 0.44 1.68 16 7 N -0.85 -42.31 8.91 21.65 0.19 -42.12 16 8 Si 0.96 42.63 29.67 68.60 2.04 44.66 16 9 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 C 0.65 34.24 7.75 179.06 1.39 35.63 16 13 O -0.67 -40.55 16.04 -3.99 -0.06 -40.62 16 14 N -0.65 -26.70 2.85 -835.32 -2.38 -29.08 16 15 C 0.10 3.42 6.53 86.35 0.56 3.98 16 16 C 0.06 1.45 6.98 72.08 0.50 1.95 16 17 O -0.39 -10.56 10.74 -148.98 -1.60 -12.16 16 18 C 0.05 1.27 6.56 72.08 0.47 1.75 16 19 C 0.02 0.77 5.58 86.35 0.48 1.25 16 20 H 0.06 2.78 6.78 -2.39 -0.02 2.76 16 21 H 0.08 2.39 7.91 -2.39 -0.02 2.37 16 22 H 0.03 1.12 7.59 -2.39 -0.02 1.10 16 23 H 0.09 4.47 5.47 -2.39 -0.01 4.46 16 24 H 0.08 2.99 3.08 -2.38 -0.01 2.98 16 25 H 0.27 12.71 8.31 -92.70 -0.77 11.94 16 26 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 27 H 0.07 2.67 7.56 -2.39 -0.02 2.66 16 28 H 0.13 2.55 8.14 -2.39 -0.02 2.54 16 29 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 1.46 6.86 -2.38 -0.02 1.44 16 31 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.14 4.68 1.27 -11.30 -0.01 4.67 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -68.68 255.97 3.19 -65.48 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 1.11 Total: 14.60 kcal Atomic # 6 Polarization: 20.11 SS G_CDS: 5.62 Total: 25.73 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -3.91 Total: -97.69 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: -1.66 Total: -52.78 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.04 Total: 44.66 kcal Total: -68.68 3.19 -65.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085963150.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.844 kcal (2) G-P(sol) polarization free energy of solvation -68.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds