Wall clock time and date at job start Mon Mar 30 2020 02:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.50696 * 109.47087 * 120.00096 * 2 1 3 5 5 H 1.08003 * 120.00092 * 120.00284 * 4 2 1 6 6 C 1.37879 * 120.00258 * 299.99637 * 4 2 1 7 7 N 1.31512 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00053 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47198 * 90.00383 * 8 6 4 10 10 H 1.48506 * 109.47350 * 210.00533 * 8 6 4 11 11 H 1.48502 * 109.47345 * 330.00247 * 8 6 4 12 12 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 84.72116 * 12 2 1 14 14 O 1.21593 * 119.99949 * 0.28071 * 13 12 2 15 15 N 1.34777 * 120.00128 * 180.27942 * 13 12 2 16 16 C 1.46499 * 120.00065 * 180.02562 * 15 13 12 17 17 H 1.08997 * 110.43748 * 323.91106 * 16 15 13 18 18 C 1.54806 * 110.48758 * 201.21632 * 16 15 13 19 19 C 1.54993 * 102.09627 * 220.44472 * 18 16 15 20 20 O 1.44382 * 103.48883 * 37.02487 * 19 18 16 21 21 C 1.43742 * 106.97337 * 319.93794 * 20 19 18 22 22 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 23 23 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 24 24 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 25 25 H 0.96996 * 120.00441 * 179.97438 * 7 6 4 26 26 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 27 27 H 0.97000 * 119.99549 * 359.97438 * 15 13 12 28 28 H 1.09002 * 110.90986 * 338.64470 * 18 16 15 29 29 H 1.09006 * 110.90628 * 102.24683 * 18 16 15 30 30 H 1.09006 * 110.61908 * 278.52866 * 19 18 16 31 31 H 1.08993 * 110.62428 * 155.52640 * 19 18 16 32 32 H 1.08995 * 109.88097 * 267.08689 * 21 20 19 33 33 H 1.09006 * 109.87748 * 145.93700 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6035 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5461 4.4123 10 1 1.3431 -0.9494 5.1120 11 1 2.4858 -2.5663 3.7119 12 7 2.0184 -0.6906 -1.1962 13 6 2.1417 -0.0196 -2.3585 14 8 1.8526 1.1602 -2.4130 15 7 2.5857 -0.6562 -3.4603 16 6 2.7203 0.0733 -4.7236 17 1 1.9194 0.8052 -4.8277 18 6 2.7190 -0.9095 -5.9197 19 6 3.8106 -0.3043 -6.8386 20 8 4.8043 0.1779 -5.9086 21 6 4.0956 0.7638 -4.8038 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 0.7083 1.1608 3.4844 26 1 2.2490 -1.6318 -1.1527 27 1 2.8167 -1.5973 -3.4167 28 1 2.9943 -1.9140 -5.5981 29 1 1.7496 -0.9142 -6.4182 30 1 3.4043 0.5185 -7.4268 31 1 4.2331 -1.0703 -7.4887 32 1 3.9645 1.8326 -4.9725 33 1 4.6483 0.5976 -3.8790 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087312209.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:56 Heat of formation + Delta-G solvation = -79.850204 kcal Electronic energy + Delta-G solvation = -16005.179220 eV Core-core repulsion = 13258.888443 eV Total energy + Delta-G solvation = -2746.290777 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.93249 -38.57011 -35.03527 -34.02425 -32.37009 -30.84726 -29.09104 -27.77772 -25.22189 -23.05272 -21.86859 -20.71568 -19.73250 -18.12890 -16.78222 -16.50290 -15.80792 -15.44496 -14.96275 -14.44274 -14.36128 -13.55596 -13.32763 -12.96572 -12.35873 -12.27197 -11.85254 -11.62553 -11.57867 -11.06448 -11.03696 -10.95994 -10.69423 -10.28575 -10.20768 -9.82994 -9.38642 -9.02447 -8.73936 -8.52222 -7.80564 -6.10239 -4.19095 3.25717 3.27818 3.33117 3.36769 3.83745 3.96263 4.34307 4.45281 4.79221 4.90075 5.02632 5.15583 5.22805 5.25942 5.50382 5.59397 5.70616 5.86233 5.99419 6.75184 6.83553 6.85920 7.01492 7.17190 7.31077 7.54223 7.65687 7.89050 8.07118 8.19141 8.79089 8.95032 9.35308 9.51686 10.95914 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.054682 B = 0.005312 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.929779 B = 5270.311900 C = 5439.506101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.280 3.720 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.725 5.725 13 C 0.694 3.306 14 O -0.600 6.600 15 N -0.750 5.750 16 C 0.136 3.864 17 H 0.100 0.900 18 C -0.162 4.162 19 C 0.047 3.953 20 O -0.380 6.380 21 C 0.034 3.966 22 H 0.089 0.911 23 H 0.014 0.986 24 H 0.025 0.975 25 H 0.264 0.736 26 H 0.384 0.616 27 H 0.392 0.608 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.043 -5.105 -14.629 15.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.178 3.822 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.376 5.376 13 C 0.394 3.606 14 O -0.479 6.479 15 N -0.407 5.407 16 C 0.029 3.971 17 H 0.118 0.882 18 C -0.200 4.200 19 C -0.030 4.030 20 O -0.299 6.299 21 C -0.045 4.045 22 H 0.108 0.892 23 H 0.033 0.967 24 H 0.044 0.956 25 H 0.074 0.926 26 H 0.216 0.784 27 H 0.226 0.774 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.888 -3.872 -14.484 15.269 hybrid contribution 0.241 -1.317 0.955 1.644 sum 3.129 -5.189 -13.530 14.825 Atomic orbital electron populations 1.22095 0.98701 0.98975 1.00828 1.18628 0.90752 0.93723 0.79085 0.93428 1.21221 1.32343 1.13199 0.90320 0.92143 1.24882 0.94837 0.94993 0.99019 1.69905 1.35858 1.22521 1.23843 0.86439 0.78588 0.79800 0.82190 1.20574 1.21086 1.19895 1.45814 1.69201 1.13274 1.09299 1.16191 0.78450 0.85417 0.80576 1.90869 1.57810 1.14528 1.84645 1.45259 1.73355 1.13337 1.08771 1.22025 0.97906 0.94253 0.82887 0.88175 1.23416 1.00562 0.99885 0.96141 1.23503 0.88864 0.98106 0.92492 1.88885 1.30339 1.78453 1.32253 1.23764 0.92910 0.97339 0.90449 0.89204 0.96657 0.95611 0.92593 0.78369 0.77389 0.89880 0.89447 0.91953 0.88886 0.91580 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.38 16 2 C 0.28 7.26 2.56 -69.09 -0.18 7.08 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -14.23 8.73 -34.44 -0.30 -14.53 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.08 11.32 55.43 0.63 -24.45 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.72 -15.35 5.07 -59.82 -0.30 -15.65 16 13 C 0.69 14.20 8.52 -86.92 -0.74 13.46 16 14 O -0.60 -14.77 15.72 5.28 0.08 -14.69 16 15 N -0.75 -11.20 5.05 -57.18 -0.29 -11.49 16 16 C 0.14 1.80 3.35 -66.40 -0.22 1.58 16 17 H 0.10 1.46 7.66 -51.93 -0.40 1.06 16 18 C -0.16 -1.50 6.87 -24.73 -0.17 -1.67 16 19 C 0.05 0.44 7.72 38.21 0.29 0.73 16 20 O -0.38 -4.99 11.52 -35.23 -0.41 -5.39 16 21 C 0.03 0.46 7.50 37.73 0.28 0.75 16 22 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.38 7.00 8.55 -40.82 -0.35 6.65 16 27 H 0.39 4.74 8.37 -40.82 -0.34 4.40 16 28 H 0.08 0.71 7.75 -51.93 -0.40 0.30 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.09 1.38 7.93 -51.93 -0.41 0.97 16 LS Contribution 278.15 15.07 4.19 4.19 Total: -1.00 -31.72 278.15 -6.59 -38.31 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -4.69 Total: 7.77 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -0.78 Total: 5.69 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: 0.03 Total: -51.60 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.32 Total: -20.08 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.72 -6.59 -38.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087312209.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.538 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds