Wall clock time and date at job start Mon Mar 30 2020 02:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.50696 * 109.47087 * 120.00096 * 2 1 3 5 5 H 1.08003 * 120.00092 * 120.00284 * 4 2 1 6 6 C 1.37879 * 120.00258 * 299.99637 * 4 2 1 7 7 N 1.31512 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00053 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47198 * 90.00383 * 8 6 4 10 10 H 1.48506 * 109.47350 * 210.00533 * 8 6 4 11 11 H 1.48502 * 109.47345 * 330.00247 * 8 6 4 12 12 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 84.72116 * 12 2 1 14 14 O 1.21593 * 119.99949 * 0.28071 * 13 12 2 15 15 N 1.34777 * 120.00128 * 180.27942 * 13 12 2 16 16 C 1.46499 * 120.00065 * 180.02562 * 15 13 12 17 17 H 1.08997 * 110.43748 * 323.91106 * 16 15 13 18 18 C 1.54806 * 110.48758 * 201.21632 * 16 15 13 19 19 C 1.54993 * 102.09627 * 220.44472 * 18 16 15 20 20 O 1.44382 * 103.48883 * 37.02487 * 19 18 16 21 21 C 1.43742 * 106.97337 * 319.93794 * 20 19 18 22 22 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 23 23 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 24 24 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 25 25 H 0.96996 * 120.00441 * 179.97438 * 7 6 4 26 26 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 27 27 H 0.97000 * 119.99549 * 359.97438 * 15 13 12 28 28 H 1.09002 * 110.90986 * 338.64470 * 18 16 15 29 29 H 1.09006 * 110.90628 * 102.24683 * 18 16 15 30 30 H 1.09006 * 110.61908 * 278.52866 * 19 18 16 31 31 H 1.08993 * 110.62428 * 155.52640 * 19 18 16 32 32 H 1.08995 * 109.88097 * 267.08689 * 21 20 19 33 33 H 1.09006 * 109.87748 * 145.93700 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6035 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5461 4.4123 10 1 1.3431 -0.9494 5.1120 11 1 2.4858 -2.5663 3.7119 12 7 2.0184 -0.6906 -1.1962 13 6 2.1417 -0.0196 -2.3585 14 8 1.8526 1.1602 -2.4130 15 7 2.5857 -0.6562 -3.4603 16 6 2.7203 0.0733 -4.7236 17 1 1.9194 0.8052 -4.8277 18 6 2.7190 -0.9095 -5.9197 19 6 3.8106 -0.3043 -6.8386 20 8 4.8043 0.1779 -5.9086 21 6 4.0956 0.7638 -4.8038 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 0.7083 1.1608 3.4844 26 1 2.2490 -1.6318 -1.1527 27 1 2.8167 -1.5973 -3.4167 28 1 2.9943 -1.9140 -5.5981 29 1 1.7496 -0.9142 -6.4182 30 1 3.4043 0.5185 -7.4268 31 1 4.2331 -1.0703 -7.4887 32 1 3.9645 1.8326 -4.9725 33 1 4.6483 0.5976 -3.8790 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087312209.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:56 Heat of formation + Delta-G solvation = -104.447815 kcal Electronic energy + Delta-G solvation = -16006.245853 eV Core-core repulsion = 13258.888443 eV Total energy + Delta-G solvation = -2747.357409 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.25111 -39.90011 -36.84410 -35.49752 -34.29423 -32.01880 -30.60443 -29.13913 -27.31839 -24.18678 -23.20844 -22.05805 -21.47622 -19.79251 -18.14911 -17.80006 -17.29290 -16.90169 -16.37972 -15.98729 -15.83682 -15.10824 -14.89475 -14.33390 -13.95069 -13.72435 -13.20980 -13.03888 -12.87520 -12.79149 -12.67134 -12.45783 -12.24691 -12.11672 -11.88129 -11.17041 -11.09167 -10.81445 -10.59085 -10.18240 -9.55220 -8.16221 -6.33454 1.46270 1.47004 1.57591 1.88210 2.27541 2.43694 2.98736 3.14405 3.48297 3.60681 3.86206 4.09427 4.16546 4.33320 4.66080 4.73670 4.77622 4.85651 4.95024 4.97251 5.01686 5.11957 5.41879 5.58144 5.62123 5.69568 5.82569 5.89552 6.12187 6.33578 6.74990 7.33594 7.36711 7.78528 8.90442 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.054682 B = 0.005312 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.929779 B = 5270.311900 C = 5439.506101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.287 3.713 3 H -0.004 1.004 4 C -0.546 4.546 5 H 0.073 0.927 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.259 1.259 12 N -0.721 5.721 13 C 0.692 3.308 14 O -0.645 6.645 15 N -0.726 5.726 16 C 0.129 3.871 17 H 0.085 0.915 18 C -0.147 4.147 19 C 0.042 3.958 20 O -0.397 6.397 21 C 0.038 3.962 22 H 0.066 0.934 23 H 0.011 0.989 24 H 0.040 0.960 25 H 0.265 0.735 26 H 0.402 0.598 27 H 0.410 0.590 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.061 0.939 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.571 -7.377 -15.577 17.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.183 3.817 3 H 0.014 0.986 4 C -0.584 4.584 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.183 1.183 12 N -0.373 5.373 13 C 0.392 3.608 14 O -0.528 6.528 15 N -0.384 5.384 16 C 0.022 3.978 17 H 0.103 0.897 18 C -0.185 4.185 19 C -0.034 4.034 20 O -0.316 6.316 21 C -0.041 4.041 22 H 0.085 0.915 23 H 0.030 0.970 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.236 0.764 27 H 0.247 0.753 28 H 0.116 0.884 29 H 0.127 0.873 30 H 0.092 0.908 31 H 0.137 0.863 32 H 0.079 0.921 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.443 -6.212 -15.494 17.044 hybrid contribution 0.099 -0.578 1.142 1.284 sum 3.542 -6.790 -14.351 16.267 Atomic orbital electron populations 1.21907 0.98431 0.99385 0.99453 1.18217 0.90910 0.91571 0.80967 0.98592 1.21534 1.32551 1.13576 0.90725 0.90880 1.25805 0.94867 0.95614 1.02317 1.70056 1.36960 1.24000 1.24615 0.85316 0.77706 0.79161 0.77943 1.20462 1.20922 1.18345 1.45423 1.69453 1.13928 1.08519 1.16337 0.78257 0.84851 0.81367 1.90840 1.59718 1.16761 1.85462 1.45021 1.71535 1.14069 1.07781 1.22212 0.97010 0.95256 0.83280 0.89734 1.23410 1.01869 0.99268 0.93986 1.23804 0.88237 0.99247 0.92095 1.88871 1.31646 1.78556 1.32521 1.23576 0.92924 0.97340 0.90252 0.91516 0.97033 0.94090 0.92539 0.76364 0.75262 0.88398 0.87292 0.90770 0.86256 0.92094 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.83 9.26 71.98 0.67 -6.17 16 2 C 0.29 15.17 2.56 44.24 0.11 15.28 16 3 H 0.00 -0.24 7.58 -2.39 -0.02 -0.26 16 4 C -0.55 -29.06 8.73 25.60 0.22 -28.83 16 5 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 6 C 0.01 0.75 5.30 84.66 0.45 1.20 16 7 N -0.92 -53.00 11.32 21.45 0.24 -52.76 16 8 Si 0.97 42.06 29.54 68.60 2.03 44.08 16 9 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 12 N -0.72 -30.38 5.07 -461.42 -2.34 -32.72 16 13 C 0.69 28.40 8.52 179.05 1.53 29.92 16 14 O -0.65 -32.77 15.72 -4.01 -0.06 -32.84 16 15 N -0.73 -20.80 5.05 -453.08 -2.29 -23.09 16 16 C 0.13 3.24 3.35 45.98 0.15 3.40 16 17 H 0.08 2.44 7.66 -2.39 -0.02 2.42 16 18 C -0.15 -2.26 6.87 31.89 0.22 -2.04 16 19 C 0.04 0.65 7.72 72.66 0.56 1.21 16 20 O -0.40 -9.75 11.52 -148.98 -1.72 -11.47 16 21 C 0.04 1.02 7.50 72.36 0.54 1.57 16 22 H 0.07 3.75 6.07 -2.39 -0.01 3.73 16 23 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 26 H 0.40 14.04 8.55 -92.71 -0.79 13.25 16 27 H 0.41 8.90 8.37 -92.71 -0.78 8.13 16 28 H 0.10 1.26 7.75 -2.39 -0.02 1.24 16 29 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 2.17 7.93 -2.38 -0.02 2.15 16 Total: -1.00 -69.99 278.15 -0.13 -70.13 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -0.45 Total: 23.11 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: 4.45 Total: 15.55 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -4.39 Total: -108.56 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -1.78 Total: -44.30 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -69.99 -0.13 -70.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087312209.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.320 kcal (2) G-P(sol) polarization free energy of solvation -69.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds