Wall clock time and date at job start Mon Mar 30 2020 03:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.48605 * 2 1 4 4 C 1.53092 * 109.48361 * 239.97396 * 2 1 3 5 5 C 1.53174 * 109.16663 * 182.40872 * 4 2 1 6 6 O 1.42906 * 109.54597 * 176.84772 * 5 4 2 7 7 C 1.42890 * 114.00267 * 150.17656 * 6 5 4 8 8 C 1.52997 * 109.47489 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47460 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00179 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00472 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99350 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00608 * 179.97438 * 11 9 8 14 14 H 1.48490 * 109.47339 * 179.97438 * 13 11 9 15 15 H 1.48493 * 109.47239 * 300.00306 * 13 11 9 16 16 H 1.48504 * 109.46636 * 59.99865 * 13 11 9 17 17 C 1.53173 * 109.10869 * 56.94230 * 5 4 2 18 18 C 1.53113 * 109.15399 * 303.14995 * 17 5 4 19 19 H 1.08998 * 109.49044 * 177.51011 * 18 17 5 20 20 C 1.52998 * 109.40720 * 297.49191 * 18 17 5 21 21 O 1.42902 * 109.48478 * 57.47666 * 18 17 5 22 22 H 1.08994 * 109.47700 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47023 * 300.02421 * 1 2 3 24 24 H 1.09000 * 109.47054 * 60.01971 * 1 2 3 25 25 H 1.09007 * 109.51772 * 62.50424 * 4 2 1 26 26 H 1.08999 * 109.52453 * 302.31958 * 4 2 1 27 27 H 1.08997 * 109.54621 * 297.02277 * 5 4 2 28 28 H 1.09003 * 109.47346 * 60.00159 * 7 6 5 29 29 H 1.08999 * 109.47661 * 300.00456 * 7 6 5 30 30 H 1.09005 * 109.46800 * 60.00665 * 8 7 6 31 31 H 1.08998 * 109.47382 * 300.00464 * 8 7 6 32 32 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 33 33 H 1.09001 * 109.52652 * 62.96178 * 17 5 4 34 34 H 1.09002 * 109.52771 * 183.16055 * 17 5 4 35 35 H 1.09001 * 109.47127 * 179.97438 * 20 18 17 36 36 H 1.08996 * 109.47302 * 299.98888 * 20 18 17 37 37 H 1.09004 * 109.46964 * 59.98764 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2496 5 6 3.5710 -0.7708 -1.2122 6 8 4.0536 -1.5073 -2.3377 7 6 5.3408 -1.0900 -2.7969 8 6 5.7546 -1.9419 -3.9985 9 6 7.1124 -1.5022 -4.4823 10 1 7.6284 -0.6954 -3.9830 11 6 7.6955 -2.1290 -5.5631 12 7 7.0669 -3.1111 -6.1713 13 14 9.3782 -1.5835 -6.1633 14 1 9.7799 -2.4105 -7.3294 15 1 9.3214 -0.1551 -6.5649 16 1 10.3714 -1.7518 -5.0721 17 6 4.0194 -1.4590 0.0807 18 6 3.4306 -0.7095 1.2790 19 1 3.7098 -1.2204 2.2005 20 6 3.9761 0.7198 1.3027 21 8 2.0065 -0.6744 1.1663 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5142 0.8898 24 1 -0.3633 0.5135 -0.8902 25 1 1.7148 -0.1841 -2.1398 26 1 1.6442 -1.7374 -1.2711 27 1 3.9690 0.2435 -1.2424 28 1 6.0697 -1.2126 -1.9958 29 1 5.2989 -0.0416 -3.0925 30 1 5.0257 -1.8187 -4.7995 31 1 5.7965 -2.9903 -3.7034 32 1 7.4770 -3.5519 -6.9319 33 1 3.6643 -2.4895 0.0870 34 1 5.1077 -1.4473 0.1412 35 1 3.5572 1.2544 2.1552 36 1 5.0623 0.6927 1.3886 37 1 3.6971 1.2304 0.3810 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159563007.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:34 Heat of formation + Delta-G solvation = -119.421628 kcal Electronic energy + Delta-G solvation = -16330.408167 eV Core-core repulsion = 13685.941788 eV Total energy + Delta-G solvation = -2644.466379 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.00526 -37.13535 -33.44600 -33.42105 -32.34569 -29.97932 -28.71248 -26.69682 -24.61118 -22.91105 -22.02518 -20.85625 -19.32452 -16.88010 -16.38091 -16.06232 -15.57728 -14.95746 -14.61981 -14.51078 -14.03485 -13.65207 -13.10260 -12.85213 -12.61267 -12.23399 -12.13029 -11.97598 -11.73512 -11.46409 -11.22020 -11.04894 -10.93567 -10.72514 -10.46545 -10.26244 -10.01199 -9.66566 -9.35063 -9.22014 -8.84385 -8.36243 -6.03805 -4.07737 3.31279 3.35602 3.37621 3.68033 4.13565 4.46017 4.71774 4.81387 4.91147 5.04337 5.09791 5.26948 5.29446 5.32061 5.35408 5.44682 5.48858 5.68320 5.79152 5.81942 5.91951 5.98747 6.04018 6.14023 6.18622 6.23285 6.34601 6.41519 6.87848 7.22844 7.54478 7.78127 7.82434 8.10993 8.35136 8.98589 9.55938 11.07810 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.049159 B = 0.004899 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.448159 B = 5713.903328 C = 6009.917152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.086 3.914 3 H 0.060 0.940 4 C -0.147 4.147 5 C 0.087 3.913 6 O -0.383 6.383 7 C 0.069 3.931 8 C 0.025 3.975 9 C -0.525 4.525 10 H 0.055 0.945 11 C 0.060 3.940 12 N -0.891 5.891 13 Si 0.897 3.103 14 H -0.286 1.286 15 H -0.276 1.276 16 H -0.276 1.276 17 C -0.172 4.172 18 C 0.091 3.909 19 H 0.102 0.898 20 C -0.189 4.189 21 O -0.376 6.376 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.263 0.737 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.548 7.090 13.740 18.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.028 3.972 3 H 0.078 0.922 4 C -0.184 4.184 5 C 0.029 3.971 6 O -0.302 6.302 7 C -0.007 4.007 8 C -0.012 4.012 9 C -0.563 4.563 10 H 0.073 0.927 11 C -0.142 4.142 12 N -0.530 5.530 13 Si 0.724 3.276 14 H -0.211 1.211 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.210 4.210 18 C 0.034 3.966 19 H 0.120 0.880 20 C -0.246 4.246 21 O -0.296 6.296 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.755 6.727 13.627 18.058 hybrid contribution 1.411 0.536 -0.509 1.593 sum -8.344 7.264 13.119 17.160 Atomic orbital electron populations 1.21748 0.93000 1.03028 1.02241 1.22070 0.94967 0.95305 0.84836 0.92197 1.22318 0.95026 1.02772 0.98333 1.21980 0.93760 0.94716 0.86659 1.87977 1.36283 1.59802 1.46184 1.22910 0.81691 0.98335 0.97732 1.19061 0.95959 0.95305 0.90839 1.21013 1.02463 1.18453 1.14420 0.92652 1.24993 0.97894 0.94928 0.96418 1.69975 1.38248 1.23057 1.21673 0.86585 0.84069 0.78630 0.78289 1.21147 1.20171 1.20172 1.22727 1.01745 1.01369 0.95167 1.22128 0.80674 0.95376 0.98462 0.87994 1.22491 1.02037 0.97501 1.02570 1.87947 1.20805 1.77773 1.43034 0.91711 0.91981 0.91049 0.90434 0.90248 0.92594 0.94798 0.94814 0.95779 0.95760 0.92777 0.90283 0.90601 0.91914 0.91287 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.56 37.15 0.36 -1.01 16 2 C 0.09 1.01 2.94 -26.69 -0.08 0.93 16 3 H 0.06 0.65 6.34 -51.93 -0.33 0.33 16 4 C -0.15 -2.02 5.07 -26.59 -0.13 -2.16 16 5 C 0.09 1.39 2.38 -26.55 -0.06 1.32 16 6 O -0.38 -7.92 10.00 -35.23 -0.35 -8.28 16 7 C 0.07 1.53 5.69 37.16 0.21 1.75 16 8 C 0.03 0.69 5.34 -27.89 -0.15 0.55 16 9 C -0.53 -15.09 9.11 -34.44 -0.31 -15.40 16 10 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -27.10 13.29 55.43 0.74 -26.37 16 13 Si 0.90 21.64 29.54 -169.99 -5.02 16.61 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 C -0.17 -2.44 5.26 -26.58 -0.14 -2.58 16 18 C 0.09 1.08 3.91 -26.67 -0.10 0.98 16 19 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 20 C -0.19 -1.96 8.65 37.16 0.32 -1.64 16 21 O -0.38 -4.89 10.24 -35.23 -0.36 -5.25 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.06 0.85 6.27 -51.93 -0.33 0.52 16 28 H 0.03 0.72 7.97 -51.93 -0.41 0.31 16 29 H 0.03 0.72 8.09 -51.93 -0.42 0.30 16 30 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.08 1.08 7.97 -51.93 -0.41 0.66 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.68 4.98 -51.93 -0.26 0.42 16 LS Contribution 295.01 15.07 4.45 4.45 Total: -1.00 -31.01 295.01 -7.10 -38.11 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -6.35 Total: -3.62 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -0.19 Total: -15.65 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.74 Total: -26.37 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.71 Total: -13.53 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.01 -7.10 -38.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159563007.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.316 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds