Wall clock time and date at job start Mon Mar 30 2020 03:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.52996 * 109.47127 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47308 * 64.99842 * 4 3 2 6 6 C 1.46011 * 118.53369 * 90.00173 * 5 4 3 7 7 C 1.52983 * 110.04059 * 161.81770 * 6 5 4 8 8 N 1.47192 * 108.72818 * 50.29017 * 7 6 5 9 9 C 1.46901 * 110.17384 * 290.99716 * 8 7 6 10 10 H 1.08991 * 109.39136 * 290.14596 * 9 8 7 11 11 C 1.50703 * 109.38521 * 170.35197 * 9 8 7 12 12 H 1.08000 * 119.99955 * 240.00489 * 11 9 8 13 13 C 1.37880 * 119.99582 * 60.00261 * 11 9 8 14 14 N 1.31511 * 120.00211 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 119.99399 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46903 * 90.00642 * 15 13 11 17 17 H 1.48504 * 109.47098 * 209.99776 * 15 13 11 18 18 H 1.48498 * 109.47582 * 329.99948 * 15 13 11 19 19 C 1.33713 * 118.53588 * 269.73340 * 5 4 3 20 20 O 1.21280 * 118.62536 * 1.70282 * 19 5 4 21 21 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 23 23 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 24 24 H 1.09001 * 109.46707 * 299.99906 * 3 2 1 25 25 H 1.08999 * 109.46695 * 60.00012 * 3 2 1 26 26 H 1.09001 * 109.46958 * 185.00183 * 4 3 2 27 27 H 1.08998 * 109.46981 * 304.99923 * 4 3 2 28 28 H 1.09002 * 109.37210 * 281.98978 * 6 5 4 29 29 H 1.09000 * 109.37424 * 41.63936 * 6 5 4 30 30 H 1.08997 * 109.59242 * 170.06407 * 7 6 5 31 31 H 1.08999 * 109.59290 * 290.51793 * 7 6 5 32 32 H 1.00900 * 111.00056 * 54.37029 * 8 7 6 33 33 H 0.96998 * 119.99720 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.2770 1.4280 -2.3908 7 6 5.1255 0.6704 -3.4138 8 7 4.4802 -0.6213 -3.6993 9 6 4.5623 -1.4993 -2.5244 10 1 5.5961 -1.8117 -2.3777 11 6 3.6993 -2.7146 -2.7468 12 1 2.8824 -2.9274 -2.0731 13 6 3.9526 -3.5547 -3.8104 14 7 4.9470 -3.2952 -4.6310 15 14 2.8833 -5.0614 -4.0856 16 1 1.7393 -4.7030 -4.9620 17 1 3.6881 -6.1279 -4.7337 18 1 2.3724 -5.5510 -2.7800 19 6 4.0890 -0.7672 -1.3007 20 8 3.7931 -1.4113 -0.3166 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 1.6887 1.8463 -0.8900 25 1 1.6887 1.8463 0.8900 26 1 3.9786 2.1764 0.0890 27 1 3.8514 0.5681 0.8409 28 1 3.3458 1.7472 -2.8589 29 1 4.8248 2.3044 -2.0446 30 1 5.1984 1.2535 -4.3318 31 1 6.1221 0.4991 -3.0068 32 1 3.5219 -0.4910 -3.9871 33 1 5.1253 -3.8864 -5.3790 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219592226.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:28 Heat of formation + Delta-G solvation = -89.697814 kcal Electronic energy + Delta-G solvation = -16876.786128 eV Core-core repulsion = 14130.068327 eV Total energy + Delta-G solvation = -2746.717801 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.24424 -38.69324 -37.40389 -36.01260 -34.10660 -31.04431 -30.30584 -27.64233 -27.23484 -25.12992 -23.76361 -23.15592 -19.70417 -18.82691 -17.79734 -17.52414 -17.07285 -16.72202 -16.31442 -15.93777 -15.61393 -15.37484 -15.13319 -14.41676 -13.69927 -13.54177 -13.50577 -13.06292 -13.03084 -12.74431 -12.66032 -12.61256 -12.11396 -11.99578 -11.94140 -11.30687 -10.89627 -10.58732 -10.55499 -9.52574 -8.67268 -8.05954 -6.24785 1.41620 1.43077 1.54547 1.98360 2.21826 2.48917 2.98391 3.16380 3.78918 3.97871 4.10515 4.18082 4.32684 4.37227 4.40637 4.45816 4.49590 4.52139 4.65388 4.79201 4.88747 4.95267 5.08927 5.19466 5.65546 5.75484 5.91178 6.37400 6.38441 6.74649 6.91473 6.93024 7.44135 7.57514 8.98542 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.025564 B = 0.010333 C = 0.008167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.033252 B = 2709.195134 C = 3427.613242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.411 6.411 3 C 0.044 3.956 4 C 0.106 3.894 5 N -0.614 5.614 6 C 0.082 3.918 7 C 0.035 3.965 8 N -0.658 5.658 9 C 0.219 3.781 10 H 0.029 0.971 11 C -0.542 4.542 12 H 0.037 0.963 13 C 0.040 3.960 14 N -0.873 5.873 15 Si 0.953 3.047 16 H -0.269 1.269 17 H -0.275 1.275 18 H -0.283 1.283 19 C 0.489 3.511 20 O -0.580 6.580 21 H 0.072 0.928 22 H 0.046 0.954 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.080 0.920 26 H 0.131 0.869 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.060 0.940 32 H 0.329 0.671 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.572 14.224 3.924 15.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.330 6.330 3 C -0.033 4.033 4 C -0.017 4.017 5 N -0.348 5.348 6 C -0.042 4.042 7 C -0.095 4.095 8 N -0.287 5.287 9 C 0.108 3.892 10 H 0.047 0.953 11 C -0.581 4.581 12 H 0.055 0.945 13 C -0.164 4.164 14 N -0.508 5.508 15 Si 0.778 3.222 16 H -0.194 1.194 17 H -0.201 1.201 18 H -0.208 1.208 19 C 0.277 3.723 20 O -0.458 6.458 21 H 0.091 0.909 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.098 0.902 26 H 0.149 0.851 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.079 0.921 32 H 0.147 0.853 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.923 13.384 3.928 14.490 hybrid contribution -1.265 -0.443 0.501 1.431 sum -5.187 12.941 4.429 14.629 Atomic orbital electron populations 1.22803 0.80609 1.02586 1.00685 1.88189 1.20559 1.28874 1.95425 1.23093 0.94205 0.84707 1.01330 1.21715 0.93151 0.99710 0.87108 1.47642 1.67427 1.05673 1.14069 1.22412 1.00563 0.94121 0.87091 1.22546 0.97561 0.90806 0.98543 1.60997 1.21818 1.10901 1.34989 1.18931 0.96151 0.91343 0.82812 0.95318 1.20855 1.16006 1.08780 1.12477 0.94510 1.25587 0.96134 0.99561 0.95140 1.70192 1.28640 1.37325 1.14652 0.85664 0.79181 0.79522 0.77787 1.19397 1.20059 1.20848 1.22096 0.76276 0.82579 0.91352 1.90523 1.50405 1.66551 1.38291 0.90919 0.93574 0.92172 0.92548 0.90244 0.85079 0.92252 0.91329 0.87391 0.87238 0.92098 0.85343 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.41 -15.53 9.25 -136.06 -1.26 -16.79 16 3 C 0.04 1.21 6.28 71.98 0.45 1.66 16 4 C 0.11 3.10 5.78 86.38 0.50 3.60 16 5 N -0.61 -22.24 2.82 -825.25 -2.32 -24.56 16 6 C 0.08 2.21 6.53 86.47 0.56 2.78 16 7 C 0.04 1.16 6.65 86.24 0.57 1.73 16 8 N -0.66 -30.03 6.00 -499.45 -3.00 -33.03 16 9 C 0.22 11.78 2.55 43.28 0.11 11.89 16 10 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16 11 C -0.54 -32.51 8.31 25.60 0.21 -32.30 16 12 H 0.04 2.37 7.41 -2.91 -0.02 2.35 16 13 C 0.04 2.32 5.39 84.66 0.46 2.77 16 14 N -0.87 -50.91 12.77 21.45 0.27 -50.64 16 15 Si 0.95 45.74 29.54 68.60 2.03 47.76 16 16 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 19 C 0.49 24.12 6.75 87.68 0.59 24.71 16 20 O -0.58 -33.06 14.50 9.89 0.14 -32.92 16 21 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 22 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.13 2.45 7.92 -2.39 -0.02 2.44 16 27 H 0.06 2.10 7.25 -2.39 -0.02 2.08 16 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.11 2.01 7.98 -2.39 -0.02 1.99 16 30 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 31 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 32 H 0.33 15.06 8.56 -89.69 -0.77 14.30 16 33 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -76.27 276.09 0.90 -75.37 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.33 Total: 15.90 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: 4.71 Total: 18.92 kcal Atomic # 7 Polarization: -103.19 SS G_CDS: -5.05 Total: -108.23 kcal Atomic # 8 Polarization: -48.60 SS G_CDS: -1.12 Total: -49.71 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -76.27 0.90 -75.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219592226.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.331 kcal (2) G-P(sol) polarization free energy of solvation -76.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds