Wall clock time and date at job start Mon Mar 30 2020 03:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00235 * 2 1 4 4 C 1.53002 * 109.47522 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.46831 * 66.67940 * 4 3 2 6 6 C 1.47190 * 111.00158 * 46.22853 * 5 4 3 7 7 C 1.52987 * 108.72829 * 167.63644 * 6 5 4 8 8 N 1.46008 * 110.04367 * 50.29214 * 7 6 5 9 9 C 1.33712 * 122.92806 * 341.83341 * 8 7 6 10 10 O 1.21280 * 118.62670 * 181.69058 * 9 8 7 11 11 C 1.46900 * 110.99985 * 283.33422 * 5 4 3 12 12 H 1.09005 * 109.38861 * 53.61448 * 11 5 4 13 13 C 1.50704 * 109.38940 * 293.82282 * 11 5 4 14 14 H 1.08000 * 119.99437 * 359.97438 * 13 11 5 15 15 C 1.37868 * 120.00216 * 179.97438 * 13 11 5 16 16 N 1.31517 * 120.00340 * 0.02562 * 15 13 11 17 17 Si 1.86807 * 120.00098 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47136 * 270.00316 * 17 15 13 19 19 H 1.48499 * 109.46666 * 30.00805 * 17 15 13 20 20 H 1.48500 * 109.46990 * 150.00165 * 17 15 13 21 21 H 1.09002 * 109.47245 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46727 * 299.99784 * 1 2 3 23 23 H 1.08997 * 109.47167 * 59.99691 * 1 2 3 24 24 H 1.09003 * 109.47166 * 60.00074 * 3 2 1 25 25 H 1.09002 * 109.47272 * 300.00467 * 3 2 1 26 26 H 1.09000 * 109.47174 * 306.67723 * 4 3 2 27 27 H 1.08997 * 109.47201 * 186.67652 * 4 3 2 28 28 H 1.08996 * 109.59386 * 287.40335 * 6 5 4 29 29 H 1.08995 * 109.59680 * 47.86220 * 6 5 4 30 30 H 1.09004 * 109.37348 * 170.46585 * 7 6 5 31 31 H 1.09004 * 109.37443 * 290.11565 * 7 6 5 32 32 H 0.97003 * 118.53855 * 161.84641 * 8 7 6 33 33 H 0.96996 * 120.00837 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9797 0.5996 -1.2728 6 6 3.3076 1.2438 -2.4128 7 6 4.0183 0.8265 -3.7018 8 7 4.1651 -0.6255 -3.7447 9 6 4.0592 -1.3992 -2.6593 10 8 4.2261 -2.5945 -2.7792 11 6 3.7418 -0.8498 -1.2972 12 1 2.6960 -1.0488 -1.0631 13 6 4.6201 -1.5183 -0.2711 14 1 5.2874 -0.9256 0.3368 15 6 4.5716 -2.8865 -0.1086 16 7 3.7592 -3.6084 -0.8493 17 14 5.6607 -3.7153 1.1628 18 1 6.9568 -4.0847 0.5391 19 1 5.9028 -2.7811 2.2915 20 1 4.9882 -4.9389 1.6686 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.6886 1.8463 0.8900 25 1 1.6886 1.8464 -0.8899 26 1 3.8496 0.5439 0.8233 27 1 3.9783 2.1734 0.1188 28 1 2.2658 0.9254 -2.4504 29 1 3.3573 2.3269 -2.3022 30 1 3.4332 1.1563 -4.5603 31 1 5.0038 1.2909 -3.7379 32 1 4.3479 -1.0478 -4.5987 33 1 3.7253 -4.5711 -0.7353 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219592475.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:33 Heat of formation + Delta-G solvation = -40.978252 kcal Electronic energy + Delta-G solvation = -17288.007780 eV Core-core repulsion = 14543.402618 eV Total energy + Delta-G solvation = -2744.605163 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.18560 -37.45244 -35.60128 -33.84965 -32.01809 -29.13923 -28.81045 -26.26754 -25.23891 -23.54150 -22.27836 -20.46706 -18.11156 -16.51131 -16.21593 -16.04631 -15.43639 -15.15041 -14.56684 -14.14506 -14.02629 -13.42542 -13.17611 -12.61929 -12.28108 -11.95165 -11.69276 -11.51523 -11.23186 -10.95066 -10.82785 -10.63875 -10.48215 -10.30820 -9.70667 -9.26609 -9.08187 -8.26916 -7.86245 -7.80199 -7.23509 -5.66655 -3.73384 3.46614 3.52300 3.54060 4.19423 4.41883 4.54940 4.67836 4.88206 5.39320 5.52887 5.57355 5.58984 5.64753 5.71734 5.72705 5.78724 5.93399 5.99901 6.04384 6.21746 6.42637 6.56696 6.82295 7.49720 7.57686 7.70467 7.98059 8.13097 8.20848 8.53720 8.78011 9.19163 9.83272 10.03776 11.33610 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.021770 B = 0.013093 C = 0.010220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.893934 B = 2137.974968 C = 2739.132117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.023 3.977 4 C 0.060 3.940 5 N -0.524 5.524 6 C 0.033 3.967 7 C 0.128 3.872 8 N -0.754 5.754 9 C 0.504 3.496 10 O -0.490 6.490 11 C 0.205 3.795 12 H 0.068 0.932 13 C -0.527 4.527 14 H 0.063 0.937 15 C 0.074 3.926 16 N -0.822 5.822 17 Si 0.891 3.109 18 H -0.284 1.284 19 H -0.275 1.275 20 H -0.289 1.289 21 H 0.083 0.917 22 H 0.032 0.968 23 H 0.031 0.969 24 H 0.040 0.960 25 H 0.043 0.957 26 H 0.099 0.901 27 H 0.074 0.926 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.373 0.627 33 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.891 11.349 -1.427 12.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C -0.055 4.055 4 C -0.069 4.069 5 N -0.249 5.249 6 C -0.096 4.096 7 C 0.002 3.998 8 N -0.412 5.412 9 C 0.291 3.709 10 O -0.359 6.359 11 C 0.097 3.903 12 H 0.085 0.915 13 C -0.565 4.565 14 H 0.081 0.919 15 C -0.134 4.134 16 N -0.455 5.455 17 Si 0.719 3.281 18 H -0.210 1.210 19 H -0.200 1.200 20 H -0.215 1.215 21 H 0.101 0.899 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.118 0.882 27 H 0.092 0.908 28 H 0.053 0.947 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.207 0.793 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.299 10.439 -1.335 11.368 hybrid contribution -0.455 -0.342 0.207 0.606 sum -4.753 10.097 -1.128 11.217 Atomic orbital electron populations 1.22700 0.83045 1.02432 0.98664 1.88303 1.18010 1.26502 1.94835 1.23447 0.97300 0.85670 0.99090 1.22283 0.89331 1.00155 0.95153 1.62719 1.55061 1.06799 1.00281 1.22385 0.96176 0.98689 0.92302 1.21123 0.99373 0.82691 0.96586 1.46369 1.77281 1.06673 1.10910 1.22097 0.75694 0.87141 0.85987 1.90769 1.46362 1.14659 1.84089 1.19689 0.99667 0.81007 0.89986 0.91483 1.20500 1.24914 0.91651 1.19423 0.91918 1.24910 0.95628 0.97435 0.95450 1.70249 1.34928 1.05339 1.34986 0.86639 0.80781 0.78929 0.81741 1.20995 1.20044 1.21537 0.89895 0.94902 0.95073 0.94133 0.93932 0.88223 0.90759 0.94715 0.90887 0.92644 0.92849 0.79317 0.93700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.36 -7.06 7.83 -35.23 -0.28 -7.33 16 3 C 0.02 0.38 5.50 37.16 0.20 0.58 16 4 C 0.06 1.08 5.85 -3.82 -0.02 1.06 16 5 N -0.52 -10.96 4.68 -229.46 -1.07 -12.04 16 6 C 0.03 0.57 4.26 -3.67 -0.02 0.55 16 7 C 0.13 2.10 7.39 -4.31 -0.03 2.07 16 8 N -0.75 -15.82 5.52 -61.06 -0.34 -16.16 16 9 C 0.50 13.43 7.36 -11.67 -0.09 13.35 16 10 O -0.49 -15.14 13.74 5.56 0.08 -15.07 16 11 C 0.21 5.33 1.79 -70.23 -0.13 5.21 16 12 H 0.07 1.90 5.23 -51.93 -0.27 1.63 16 13 C -0.53 -15.14 7.69 -34.44 -0.26 -15.41 16 14 H 0.06 1.78 7.27 -52.49 -0.38 1.40 16 15 C 0.07 2.20 4.97 -17.82 -0.09 2.11 16 16 N -0.82 -25.67 10.23 55.43 0.57 -25.10 16 17 Si 0.89 22.72 29.54 -169.99 -5.02 17.70 16 18 H -0.28 -7.31 7.11 56.52 0.40 -6.90 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 22 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.04 0.63 6.14 -51.93 -0.32 0.31 16 26 H 0.10 2.07 6.59 -51.93 -0.34 1.73 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.03 0.62 6.87 -51.93 -0.36 0.26 16 29 H 0.07 0.99 8.02 -51.93 -0.42 0.58 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.37 7.18 8.84 -40.82 -0.36 6.81 16 33 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 262.94 15.07 3.96 3.96 Total: -1.00 -34.81 262.94 -5.96 -40.77 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -4.54 Total: 2.20 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 0.68 Total: 11.07 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.84 Total: -53.30 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.20 Total: -22.40 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -34.81 -5.96 -40.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219592475.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.208 kcal (2) G-P(sol) polarization free energy of solvation -34.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds