Wall clock time and date at job start Mon Mar 30 2020 02:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46896 * 2 1 4 4 C 1.50704 * 109.46917 * 240.00056 * 2 1 3 5 5 H 1.07995 * 119.99811 * 274.99880 * 4 2 1 6 6 C 1.37875 * 119.99684 * 94.99965 * 4 2 1 7 7 N 1.31519 * 119.99917 * 184.91219 * 6 4 2 8 8 Si 1.86798 * 120.00399 * 4.91741 * 6 4 2 9 9 H 1.48504 * 109.47190 * 84.83189 * 8 6 4 10 10 H 1.48496 * 109.47200 * 204.83046 * 8 6 4 11 11 H 1.48499 * 109.47112 * 324.83331 * 8 6 4 12 12 N 1.46493 * 109.47220 * 119.99925 * 2 1 3 13 13 C 1.34775 * 120.00477 * 274.99610 * 12 2 1 14 14 O 1.21285 * 119.99743 * 0.02562 * 13 12 2 15 15 C 1.50691 * 120.00575 * 180.02562 * 13 12 2 16 16 H 1.08998 * 110.59596 * 43.00509 * 15 13 12 17 17 C 1.54943 * 110.66738 * 280.00681 * 15 13 12 18 18 C 1.54596 * 102.91864 * 204.14948 * 17 15 13 19 19 H 1.09003 * 110.31247 * 140.87449 * 18 17 15 20 20 O 1.42909 * 110.39283 * 262.99334 * 18 17 15 21 21 C 1.53994 * 105.14428 * 21.95353 * 18 17 15 22 22 N 1.47906 * 107.05342 * 1.22572 * 21 18 17 23 23 H 1.09000 * 109.47235 * 175.03671 * 1 2 3 24 24 H 1.09004 * 109.47145 * 295.03570 * 1 2 3 25 25 H 1.09005 * 109.47651 * 55.03579 * 1 2 3 26 26 H 0.96998 * 120.00399 * 180.02562 * 7 6 4 27 27 H 0.97003 * 119.99873 * 94.99810 * 12 2 1 28 28 H 1.08997 * 110.72740 * 85.79053 * 17 15 13 29 29 H 1.08997 * 110.87719 * 322.57290 * 17 15 13 30 30 H 0.96693 * 114.00075 * 177.22097 * 20 18 17 31 31 H 1.09001 * 109.91883 * 120.57548 * 21 18 17 32 32 H 1.08996 * 109.91746 * 241.87066 * 21 18 17 33 33 H 1.00906 * 110.99578 * 95.18871 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1354 -1.7854 -1.2291 6 6 2.3601 0.0121 -2.3581 7 7 2.7059 -0.6131 -3.4623 8 14 2.3135 1.8791 -2.3174 9 1 3.5991 2.3949 -1.7822 10 1 2.1057 2.3991 -3.6928 11 1 1.1986 2.3275 -1.4450 12 7 2.0183 -0.6906 1.1961 13 6 2.1472 -0.0183 2.3571 14 8 1.8583 1.1584 2.4117 15 6 2.6500 -0.7285 3.5873 16 1 3.4929 -1.3737 3.3400 17 6 1.5126 -1.5451 4.2507 18 6 1.9794 -1.6574 5.7202 19 1 1.1305 -1.5532 6.3959 20 8 2.6364 -2.9074 5.9398 21 6 2.9669 -0.4926 5.9188 22 7 3.0253 0.2493 4.6406 23 1 -0.3634 -1.0238 -0.0889 24 1 -0.3634 0.4349 0.9311 25 1 -0.3634 0.5889 -0.8422 26 1 2.9369 -0.1048 -4.2555 27 1 2.2490 -1.6317 1.1525 28 1 1.4303 -2.5321 3.7956 29 1 0.5638 -1.0123 4.1871 30 1 2.9881 -3.0151 6.8340 31 1 2.6118 0.1639 6.7132 32 1 3.9542 -0.8812 6.1681 33 1 2.3907 1.0337 4.6485 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224486302.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:20 Heat of formation + Delta-G solvation = -89.354155 kcal Electronic energy + Delta-G solvation = -16189.757009 eV Core-core repulsion = 13443.054110 eV Total energy + Delta-G solvation = -2746.702899 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.91061 -38.13586 -35.48530 -34.73149 -32.38974 -30.44234 -29.23353 -28.26113 -25.32401 -23.18069 -21.05646 -20.59789 -19.58052 -18.21027 -17.37305 -16.42890 -15.71191 -15.01133 -14.86951 -14.44306 -14.04283 -13.76576 -13.50875 -12.84496 -12.71203 -12.51425 -12.28778 -11.87446 -11.63062 -11.43433 -11.11899 -10.98034 -10.81362 -10.58769 -10.33593 -9.88007 -9.21608 -9.15689 -8.70811 -8.66170 -8.11779 -6.23469 -4.27402 3.12639 3.27738 3.34752 3.41772 3.79077 3.95800 4.28245 4.32850 4.51444 4.76253 4.93321 5.13872 5.15893 5.26954 5.42189 5.54827 5.72304 5.79515 5.94244 6.31729 6.48864 6.58764 6.65773 6.91540 7.17169 7.30678 7.36749 7.42220 7.53594 8.12110 8.55005 8.76638 8.92895 9.38361 10.88221 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.045950 B = 0.006388 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.215880 B = 4382.140133 C = 4572.318655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.230 3.770 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.888 5.888 8 Si 0.875 3.125 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.698 5.698 13 C 0.506 3.494 14 O -0.556 6.556 15 C 0.055 3.945 16 H 0.112 0.888 17 C -0.139 4.139 18 C 0.074 3.926 19 H 0.063 0.937 20 O -0.560 6.560 21 C 0.012 3.988 22 N -0.652 5.652 23 H 0.047 0.953 24 H 0.027 0.973 25 H 0.052 0.948 26 H 0.268 0.732 27 H 0.395 0.605 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.377 0.623 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.651 -2.213 17.439 17.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.128 3.872 3 H 0.068 0.932 4 C -0.569 4.569 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.702 3.298 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.346 5.346 13 C 0.290 3.710 14 O -0.435 6.435 15 C -0.058 4.058 16 H 0.130 0.870 17 C -0.178 4.178 18 C 0.014 3.986 19 H 0.081 0.919 20 O -0.366 6.366 21 C -0.119 4.119 22 N -0.283 5.283 23 H 0.066 0.934 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.228 0.772 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.225 0.775 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.242 -1.434 16.503 16.612 hybrid contribution -0.654 0.440 0.586 0.982 sum -1.896 -0.994 17.089 17.222 Atomic orbital electron populations 1.22217 0.98590 1.00582 0.99184 1.19149 0.90902 0.94390 0.82767 0.93178 1.21006 1.45318 0.95660 0.94907 0.90277 1.24943 0.93567 0.98663 0.95145 1.69882 1.44661 1.36216 1.01698 0.86884 0.79833 0.85809 0.77310 1.19790 1.21175 1.18548 1.46617 1.64420 1.13924 1.09639 1.20284 0.78485 0.87417 0.84794 1.90631 1.51798 1.15992 1.85092 1.22762 0.97699 0.93698 0.91660 0.87036 1.23031 0.98654 1.02338 0.93805 1.23112 0.94275 0.84266 0.96989 0.91868 1.86560 1.77076 1.36605 1.36324 1.23599 0.99991 0.95240 0.93071 1.62606 1.55869 1.08563 1.01310 0.93379 0.95355 0.92872 0.92217 0.77196 0.88842 0.89715 0.77550 0.91010 0.89667 0.82847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.47 37.16 0.35 -2.86 16 2 C 0.23 5.51 2.22 -69.08 -0.15 5.36 16 3 H 0.05 1.32 4.73 -51.93 -0.25 1.07 16 4 C -0.53 -14.34 9.05 -34.44 -0.31 -14.65 16 5 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 6 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 7 N -0.89 -26.26 13.96 55.43 0.77 -25.48 16 8 Si 0.88 21.77 26.99 -169.99 -4.59 17.18 16 9 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.26 -6.39 6.82 56.52 0.39 -6.01 16 12 N -0.70 -14.11 5.07 -54.94 -0.28 -14.39 16 13 C 0.51 9.75 7.12 -10.99 -0.08 9.67 16 14 O -0.56 -12.56 15.50 5.55 0.09 -12.47 16 15 C 0.06 0.82 3.70 -66.94 -0.25 0.57 16 16 H 0.11 1.64 8.14 -51.93 -0.42 1.21 16 17 C -0.14 -1.72 6.23 -24.87 -0.15 -1.88 16 18 C 0.07 0.75 4.35 -25.37 -0.11 0.64 16 19 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 20 O -0.56 -5.63 13.26 -35.23 -0.47 -6.10 16 21 C 0.01 0.12 7.33 -2.75 -0.02 0.10 16 22 N -0.65 -9.24 7.24 -104.38 -0.76 -10.00 16 23 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.39 7.09 8.59 -40.82 -0.35 6.74 16 28 H 0.09 1.15 8.08 -51.93 -0.42 0.73 16 29 H 0.08 1.06 8.05 -51.93 -0.42 0.64 16 30 H 0.38 2.03 9.11 45.56 0.41 2.45 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.84 7.96 -51.93 -0.41 0.43 16 33 H 0.35 5.23 7.77 -39.29 -0.31 4.92 16 LS Contribution 277.50 15.07 4.18 4.18 Total: -1.00 -32.32 277.50 -5.72 -38.04 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -3.85 Total: 9.90 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -0.82 Total: -0.86 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.26 Total: -49.87 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.38 Total: -18.57 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.59 Total: 17.18 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.32 -5.72 -38.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224486302.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.313 kcal (2) G-P(sol) polarization free energy of solvation -32.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds