Wall clock time and date at job start Mon Mar 30 2020 02:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46896 * 2 1 4 4 C 1.50704 * 109.46917 * 240.00056 * 2 1 3 5 5 H 1.07995 * 119.99811 * 274.99880 * 4 2 1 6 6 C 1.37875 * 119.99684 * 94.99965 * 4 2 1 7 7 N 1.31519 * 119.99917 * 184.91219 * 6 4 2 8 8 Si 1.86798 * 120.00399 * 4.91741 * 6 4 2 9 9 H 1.48504 * 109.47190 * 84.83189 * 8 6 4 10 10 H 1.48496 * 109.47200 * 204.83046 * 8 6 4 11 11 H 1.48499 * 109.47112 * 324.83331 * 8 6 4 12 12 N 1.46493 * 109.47220 * 119.99925 * 2 1 3 13 13 C 1.34775 * 120.00477 * 274.99610 * 12 2 1 14 14 O 1.21285 * 119.99743 * 0.02562 * 13 12 2 15 15 C 1.50691 * 120.00575 * 180.02562 * 13 12 2 16 16 H 1.08998 * 110.59596 * 43.00509 * 15 13 12 17 17 C 1.54943 * 110.66738 * 280.00681 * 15 13 12 18 18 C 1.54596 * 102.91864 * 204.14948 * 17 15 13 19 19 H 1.09003 * 110.31247 * 140.87449 * 18 17 15 20 20 O 1.42909 * 110.39283 * 262.99334 * 18 17 15 21 21 C 1.53994 * 105.14428 * 21.95353 * 18 17 15 22 22 N 1.47906 * 107.05342 * 1.22572 * 21 18 17 23 23 H 1.09000 * 109.47235 * 175.03671 * 1 2 3 24 24 H 1.09004 * 109.47145 * 295.03570 * 1 2 3 25 25 H 1.09005 * 109.47651 * 55.03579 * 1 2 3 26 26 H 0.96998 * 120.00399 * 180.02562 * 7 6 4 27 27 H 0.97003 * 119.99873 * 94.99810 * 12 2 1 28 28 H 1.08997 * 110.72740 * 85.79053 * 17 15 13 29 29 H 1.08997 * 110.87719 * 322.57290 * 17 15 13 30 30 H 0.96693 * 114.00075 * 177.22097 * 20 18 17 31 31 H 1.09001 * 109.91883 * 120.57548 * 21 18 17 32 32 H 1.08996 * 109.91746 * 241.87066 * 21 18 17 33 33 H 1.00906 * 110.99578 * 95.18871 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1354 -1.7854 -1.2291 6 6 2.3601 0.0121 -2.3581 7 7 2.7059 -0.6131 -3.4623 8 14 2.3135 1.8791 -2.3174 9 1 3.5991 2.3949 -1.7822 10 1 2.1057 2.3991 -3.6928 11 1 1.1986 2.3275 -1.4450 12 7 2.0183 -0.6906 1.1961 13 6 2.1472 -0.0183 2.3571 14 8 1.8583 1.1584 2.4117 15 6 2.6500 -0.7285 3.5873 16 1 3.4929 -1.3737 3.3400 17 6 1.5126 -1.5451 4.2507 18 6 1.9794 -1.6574 5.7202 19 1 1.1305 -1.5532 6.3959 20 8 2.6364 -2.9074 5.9398 21 6 2.9669 -0.4926 5.9188 22 7 3.0253 0.2493 4.6406 23 1 -0.3634 -1.0238 -0.0889 24 1 -0.3634 0.4349 0.9311 25 1 -0.3634 0.5889 -0.8422 26 1 2.9369 -0.1048 -4.2555 27 1 2.2490 -1.6317 1.1525 28 1 1.4303 -2.5321 3.7956 29 1 0.5638 -1.0123 4.1871 30 1 2.9881 -3.0151 6.8340 31 1 2.6118 0.1639 6.7132 32 1 3.9542 -0.8812 6.1681 33 1 2.3907 1.0337 4.6485 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224486302.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:20 Heat of formation + Delta-G solvation = -118.280285 kcal Electronic energy + Delta-G solvation = -16191.011340 eV Core-core repulsion = 13443.054110 eV Total energy + Delta-G solvation = -2747.957230 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.21304 -39.33832 -36.84874 -36.09059 -34.41386 -32.04998 -30.35291 -29.33904 -27.34866 -24.48343 -22.27692 -21.87175 -21.19483 -19.62389 -18.59509 -17.96302 -17.33072 -16.55687 -16.17403 -15.55575 -15.28100 -15.20643 -14.69670 -14.59185 -14.39620 -13.92821 -13.78956 -13.21086 -13.05069 -12.84256 -12.73025 -12.63300 -12.45226 -11.88813 -11.77174 -11.25847 -11.14091 -10.87901 -10.70117 -9.87064 -9.65454 -8.40388 -6.46846 1.28317 1.33025 1.43109 1.64270 2.25633 2.32785 2.99632 3.14285 3.32233 3.60435 3.83941 3.84361 4.23149 4.28080 4.38005 4.45544 4.63151 4.71110 4.80676 4.84164 4.90249 5.04007 5.07167 5.34595 5.43487 5.60328 5.70591 6.10309 6.25839 6.58048 6.84663 6.91608 7.18703 7.38176 8.74641 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.045950 B = 0.006388 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.215880 B = 4382.140133 C = 4572.318655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.233 3.767 3 H 0.029 0.971 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.033 3.967 7 N -0.929 5.929 8 Si 0.927 3.073 9 H -0.276 1.276 10 H -0.276 1.276 11 H -0.256 1.256 12 N -0.699 5.699 13 C 0.506 3.494 14 O -0.589 6.589 15 C 0.063 3.937 16 H 0.115 0.885 17 C -0.138 4.138 18 C 0.084 3.916 19 H 0.088 0.912 20 O -0.577 6.577 21 C 0.013 3.987 22 N -0.670 5.670 23 H 0.058 0.942 24 H 0.038 0.962 25 H 0.048 0.952 26 H 0.271 0.729 27 H 0.405 0.595 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.398 0.602 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.024 -2.163 19.576 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.129 3.871 3 H 0.047 0.953 4 C -0.566 4.566 5 H 0.075 0.925 6 C -0.167 4.167 7 N -0.567 5.567 8 Si 0.752 3.248 9 H -0.202 1.202 10 H -0.201 1.201 11 H -0.180 1.180 12 N -0.348 5.348 13 C 0.292 3.708 14 O -0.471 6.471 15 C -0.050 4.050 16 H 0.132 0.868 17 C -0.177 4.177 18 C 0.023 3.977 19 H 0.105 0.895 20 O -0.385 6.385 21 C -0.116 4.116 22 N -0.301 5.301 23 H 0.077 0.923 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.241 0.759 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.249 0.751 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.606 -1.416 18.682 18.805 hybrid contribution -0.507 0.353 0.001 0.618 sum -2.113 -1.062 18.683 18.833 Atomic orbital electron populations 1.22098 0.96865 1.01339 0.99549 1.18914 0.92148 0.93064 0.82958 0.95263 1.21196 1.44480 0.94836 0.96118 0.92493 1.25610 0.93704 1.02437 0.94971 1.69977 1.46529 1.37776 1.02468 0.86046 0.79640 0.81358 0.77731 1.20176 1.20093 1.17980 1.46375 1.64766 1.14420 1.09195 1.20980 0.77332 0.87024 0.85444 1.90608 1.53125 1.17609 1.85713 1.22655 0.98605 0.93734 0.89984 0.86757 1.23028 0.97572 1.01687 0.95445 1.22993 0.94905 0.84190 0.95577 0.89463 1.86511 1.77288 1.36352 1.38395 1.23706 1.00659 0.95478 0.91801 1.62635 1.55887 1.08778 1.02766 0.92286 0.94264 0.93339 0.91974 0.75949 0.88791 0.89869 0.75117 0.88605 0.89096 0.83453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.96 9.47 71.98 0.68 -5.28 16 2 C 0.23 11.06 2.22 44.25 0.10 11.16 16 3 H 0.03 1.53 4.73 -2.39 -0.01 1.52 16 4 C -0.53 -28.74 9.05 25.60 0.23 -28.50 16 5 H 0.06 3.29 8.06 -2.91 -0.02 3.27 16 6 C 0.03 1.89 5.47 84.65 0.46 2.35 16 7 N -0.93 -55.63 13.96 21.45 0.30 -55.33 16 8 Si 0.93 44.99 26.99 68.60 1.85 46.85 16 9 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.26 -12.08 6.82 99.48 0.68 -11.40 16 12 N -0.70 -27.86 5.07 -446.11 -2.26 -30.12 16 13 C 0.51 19.07 7.12 87.65 0.62 19.70 16 14 O -0.59 -26.29 15.50 -3.05 -0.05 -26.34 16 15 C 0.06 1.79 3.70 44.52 0.16 1.96 16 16 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 17 C -0.14 -3.11 6.23 31.80 0.20 -2.91 16 18 C 0.08 1.41 4.35 31.47 0.14 1.55 16 19 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 20 O -0.58 -9.70 13.26 -148.98 -1.98 -11.67 16 21 C 0.01 0.23 7.33 86.45 0.63 0.86 16 22 N -0.67 -17.71 7.24 -484.16 -3.51 -21.22 16 23 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 24 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 25 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 26 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 27 H 0.41 14.37 8.59 -92.71 -0.80 13.57 16 28 H 0.09 2.11 8.08 -2.39 -0.02 2.09 16 29 H 0.08 1.90 8.05 -2.39 -0.02 1.88 16 30 H 0.40 2.88 9.11 -74.06 -0.67 2.20 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 1.50 7.96 -2.39 -0.02 1.48 16 33 H 0.35 9.80 7.77 -89.69 -0.70 9.10 16 Total: -1.00 -68.77 277.50 -3.46 -72.24 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -1.06 Total: 24.72 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 3.23 Total: 0.88 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -5.47 Total: -106.67 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -2.02 Total: -38.02 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.85 Total: 46.85 kcal Total: -68.77 -3.46 -72.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224486302.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.045 kcal (2) G-P(sol) polarization free energy of solvation -68.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds