Wall clock time and date at job start Mon Mar 30 2020 03:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46905 * 111.00045 * 2 1 4 4 C 1.50700 * 109.47134 * 66.04543 * 3 2 1 5 5 H 1.08002 * 119.99997 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99697 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00505 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99994 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46755 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47184 * 119.99704 * 8 6 4 11 11 H 1.48496 * 109.47189 * 240.00350 * 8 6 4 12 12 C 1.46896 * 111.00407 * 236.04327 * 2 1 3 13 13 C 1.52996 * 113.01045 * 75.58869 * 12 2 1 14 14 C 1.50696 * 109.47160 * 174.75652 * 13 12 2 15 15 O 1.20825 * 120.00428 * 7.81645 * 14 13 12 16 16 O 1.34234 * 119.99646 * 187.81756 * 14 13 12 17 17 C 1.53938 * 113.73165 * 303.95795 * 12 2 1 18 18 N 1.47965 * 86.17991 * 269.35784 * 17 12 2 19 19 C 1.47958 * 90.76126 * 335.31192 * 18 17 12 20 20 H 1.08995 * 109.46942 * 183.95706 * 1 2 3 21 21 H 1.09002 * 109.46730 * 303.95388 * 1 2 3 22 22 H 1.08998 * 109.46778 * 63.95203 * 1 2 3 23 23 H 1.08999 * 109.47108 * 186.04359 * 3 2 1 24 24 H 1.08991 * 109.46894 * 306.04211 * 3 2 1 25 25 H 0.97003 * 120.00641 * 180.02562 * 7 6 4 26 26 H 1.09007 * 109.47439 * 294.75654 * 13 12 2 27 27 H 1.09003 * 109.47054 * 54.75825 * 13 12 2 28 28 H 0.96703 * 116.99733 * 180.02562 * 16 14 13 29 29 H 1.09001 * 113.75991 * 23.67194 * 17 12 2 30 30 H 1.09002 * 113.76077 * 155.03856 * 17 12 2 31 31 H 1.00899 * 110.99617 * 88.20424 * 18 17 12 32 32 H 1.09004 * 113.75602 * 270.36997 * 19 18 17 33 33 H 1.08996 * 113.75857 * 139.01077 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0268 3.3495 1.5284 7 7 2.7111 4.0022 0.6145 8 14 1.5818 4.1874 3.1376 9 1 0.8147 3.2446 3.9909 10 1 2.8232 4.5949 3.8433 11 1 0.7542 5.3883 2.8581 12 6 1.9955 -0.7660 -1.1375 13 6 1.8827 -0.0167 -2.4666 14 6 2.5583 -0.8145 -3.5520 15 8 2.9520 -1.9337 -3.3231 16 8 2.7229 -0.2817 -4.7730 17 6 1.4827 -2.2162 -1.1984 18 7 2.6676 -2.5647 -0.3835 19 6 3.3873 -1.3731 -0.8846 20 1 -0.3633 -1.0252 0.0709 21 1 -0.3633 0.5740 0.8525 22 1 -0.3633 0.4513 -0.9233 23 1 3.0798 1.3444 -0.1082 24 1 1.5612 1.9273 -0.8309 25 1 2.9857 4.9184 0.7764 26 1 0.8310 0.1210 -2.7181 27 1 2.3653 0.9565 -2.3772 28 1 3.1614 -0.8318 -5.4365 29 1 0.5347 -2.3688 -0.6825 30 1 1.4970 -2.6454 -2.2002 31 1 2.4671 -2.4783 0.6016 32 1 3.9587 -1.5557 -1.7947 33 1 3.9611 -0.8521 -0.1182 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225720650.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:24 Heat of formation + Delta-G solvation = -61.172846 kcal Electronic energy + Delta-G solvation = -16762.377781 eV Core-core repulsion = 14016.896915 eV Total energy + Delta-G solvation = -2745.480866 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.26269 -40.20113 -37.19514 -36.57021 -34.45444 -31.85881 -29.48343 -27.54495 -26.35020 -25.52572 -23.34080 -22.68278 -19.65050 -19.17854 -18.49225 -17.62451 -17.18029 -16.99404 -16.64110 -15.80082 -15.54831 -15.17205 -14.50369 -14.42527 -14.06241 -13.94887 -13.85814 -13.19631 -13.01958 -12.73770 -12.58122 -12.46310 -12.19727 -12.12826 -11.90598 -11.36130 -11.22288 -11.15928 -10.62132 -9.44330 -9.04563 -8.21327 -6.30381 1.16320 1.40600 1.42514 1.54611 2.10317 2.39619 2.99555 3.12876 3.29295 3.40490 3.77442 4.26991 4.32598 4.41895 4.45500 4.60341 4.67457 4.80198 4.84958 4.88840 5.08657 5.15650 5.19692 5.22289 5.28832 5.63563 5.69234 6.03467 6.24060 6.46618 6.58875 6.85268 7.02761 7.39234 8.89518 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.035258 B = 0.007675 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.948496 B = 3647.292903 C = 4026.332315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.519 5.519 3 C 0.211 3.789 4 C -0.524 4.524 5 H 0.063 0.937 6 C 0.005 3.995 7 N -0.931 5.931 8 Si 0.965 3.035 9 H -0.264 1.264 10 H -0.282 1.282 11 H -0.279 1.279 12 C 0.048 3.952 13 C -0.139 4.139 14 C 0.493 3.507 15 O -0.516 6.516 16 O -0.514 6.514 17 C 0.038 3.962 18 N -0.647 5.647 19 C 0.029 3.971 20 H 0.081 0.919 21 H 0.062 0.938 22 H 0.022 0.978 23 H 0.002 0.998 24 H -0.022 1.022 25 H 0.264 0.736 26 H 0.116 0.884 27 H 0.091 0.909 28 H 0.428 0.572 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.338 0.662 32 H 0.109 0.891 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.196 -8.392 -7.433 11.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.242 5.242 3 C 0.085 3.915 4 C -0.562 4.562 5 H 0.081 0.919 6 C -0.194 4.194 7 N -0.571 5.571 8 Si 0.790 3.210 9 H -0.188 1.188 10 H -0.208 1.208 11 H -0.205 1.205 12 C -0.044 4.044 13 C -0.180 4.180 14 C 0.336 3.664 15 O -0.407 6.407 16 O -0.328 6.328 17 C -0.092 4.092 18 N -0.273 5.273 19 C -0.102 4.102 20 H 0.099 0.901 21 H 0.081 0.919 22 H 0.040 0.960 23 H 0.020 0.980 24 H -0.004 1.004 25 H 0.073 0.927 26 H 0.134 0.866 27 H 0.110 0.890 28 H 0.290 0.710 29 H 0.099 0.901 30 H 0.128 0.872 31 H 0.152 0.848 32 H 0.127 0.873 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.687 -9.224 -7.005 11.890 hybrid contribution -0.315 1.910 -0.035 1.936 sum -3.002 -7.313 -7.041 10.586 Atomic orbital electron populations 1.22309 0.86928 1.01706 1.00577 1.62228 1.08633 1.15927 1.37446 1.19355 0.93684 0.83135 0.95354 1.21489 1.34835 0.97390 1.02508 0.91897 1.25828 0.95060 0.98109 1.00370 1.70066 1.39265 1.11859 1.35928 0.85393 0.77949 0.78281 0.79338 1.18822 1.20770 1.20468 1.24043 0.98071 0.94662 0.87669 1.21843 1.02951 1.00452 0.92707 1.23067 0.75677 0.84997 0.82673 1.90685 1.47655 1.20879 1.81442 1.84531 1.74410 1.51580 1.22287 1.24004 0.94531 0.89928 1.00690 1.65047 1.12787 1.40411 1.09029 1.23926 0.94993 0.90296 1.00940 0.90091 0.91887 0.95963 0.98010 1.00402 0.92729 0.86618 0.89027 0.71001 0.90079 0.87167 0.84790 0.87297 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.12 9.05 127.69 1.16 2.28 16 2 N -0.52 -20.68 4.68 -881.45 -4.12 -24.80 16 3 C 0.21 10.47 3.67 85.56 0.31 10.79 16 4 C -0.52 -28.41 8.46 25.60 0.22 -28.20 16 5 H 0.06 3.36 7.12 -2.91 -0.02 3.34 16 6 C 0.00 0.26 5.46 84.65 0.46 0.72 16 7 N -0.93 -54.21 13.29 21.44 0.28 -53.93 16 8 Si 0.97 43.24 29.54 68.60 2.03 45.27 16 9 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 12 C 0.05 1.62 0.51 5.09 0.00 1.63 16 13 C -0.14 -4.35 4.86 29.85 0.14 -4.20 16 14 C 0.49 13.49 7.57 71.23 0.54 14.03 16 15 O -0.52 -15.71 11.74 21.97 0.26 -15.45 16 16 O -0.51 -11.08 13.42 -51.46 -0.69 -11.77 16 17 C 0.04 1.15 7.44 86.41 0.64 1.79 16 18 N -0.65 -21.41 8.56 -523.59 -4.48 -25.88 16 19 C 0.03 1.03 7.58 86.41 0.65 1.68 16 20 H 0.08 2.29 6.18 -2.39 -0.01 2.28 16 21 H 0.06 2.40 6.76 -2.39 -0.02 2.38 16 22 H 0.02 0.73 7.29 -2.39 -0.02 0.71 16 23 H 0.00 0.10 7.82 -2.39 -0.02 0.08 16 24 H -0.02 -1.14 7.02 -2.39 -0.02 -1.16 16 25 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 26 H 0.12 3.25 7.43 -2.38 -0.02 3.23 16 27 H 0.09 3.32 6.59 -2.39 -0.02 3.30 16 28 H 0.43 4.89 9.10 -74.06 -0.67 4.22 16 29 H 0.08 2.19 6.14 -2.39 -0.01 2.17 16 30 H 0.11 3.28 5.75 -2.39 -0.01 3.27 16 31 H 0.34 11.11 8.89 -89.69 -0.80 10.32 16 32 H 0.11 3.87 5.28 -2.39 -0.01 3.86 16 33 H 0.05 1.98 8.02 -2.39 -0.02 1.96 16 Total: -1.00 -63.35 264.84 -2.91 -66.26 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -0.32 Total: 19.78 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 4.13 Total: 0.52 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -8.32 Total: -104.61 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.43 Total: -27.22 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -63.35 -2.91 -66.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225720650.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.086 kcal (2) G-P(sol) polarization free energy of solvation -63.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds