Wall clock time and date at job start Mon Mar 30 2020 02:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.46880 * 2 1 4 4 C 1.50700 * 109.47050 * 120.00003 * 2 1 3 5 5 H 1.08000 * 120.00604 * 119.99748 * 4 2 1 6 6 C 1.37880 * 119.99901 * 299.99936 * 4 2 1 7 7 N 1.31523 * 119.99970 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00223 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46792 * 89.99991 * 8 6 4 10 10 H 1.48494 * 109.47212 * 209.99916 * 8 6 4 11 11 H 1.48499 * 109.47073 * 330.00324 * 8 6 4 12 12 N 1.46893 * 109.47026 * 239.99597 * 2 1 3 13 13 C 1.47440 * 111.00083 * 63.00801 * 12 2 1 14 14 C 1.54318 * 107.23729 * 123.25622 * 13 12 2 15 15 C 1.55133 * 103.01904 * 22.28104 * 14 13 12 16 16 N 1.46907 * 110.99257 * 82.47946 * 15 14 13 17 17 C 1.50703 * 110.99253 * 206.25728 * 15 14 13 18 18 O 1.20827 * 119.99826 * 93.54874 * 17 15 14 19 19 O 1.34228 * 119.99983 * 273.54636 * 17 15 14 20 20 C 1.47851 * 110.99847 * 183.84464 * 12 2 1 21 21 H 1.08998 * 109.46582 * 175.86977 * 1 2 3 22 22 H 1.09000 * 109.46648 * 55.87341 * 1 2 3 23 23 H 1.09003 * 109.46891 * 295.86607 * 1 2 3 24 24 H 0.96992 * 119.99879 * 180.02562 * 7 6 4 25 25 H 1.09006 * 109.88748 * 242.66087 * 13 12 2 26 26 H 1.08995 * 109.88852 * 3.84399 * 13 12 2 27 27 H 1.08995 * 110.70809 * 140.66896 * 14 13 12 28 28 H 1.09002 * 110.69999 * 263.89982 * 14 13 12 29 29 H 1.00901 * 110.99429 * 61.44856 * 16 15 14 30 30 H 1.00893 * 111.00058 * 185.40729 * 16 15 14 31 31 H 0.96697 * 117.00031 * 179.97438 * 19 17 15 32 32 H 1.09000 * 110.37366 * 332.47243 * 20 12 2 33 33 H 1.09006 * 110.36931 * 94.81197 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8298 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.6296 -0.5458 4.4124 10 1 1.3431 -0.9491 5.1120 11 1 2.4858 -2.5661 3.7121 12 7 2.0197 -0.6925 -1.1993 13 6 1.6068 0.0164 -2.4244 14 6 2.8896 0.3464 -3.2162 15 6 3.9096 -0.6909 -2.6771 16 7 3.7546 -1.9838 -3.3572 17 6 5.3210 -0.1798 -2.8104 18 8 5.8434 0.3994 -1.8877 19 8 5.9977 -0.3680 -3.9543 20 6 3.4947 -0.7929 -1.1881 21 1 -0.3632 -1.0250 -0.0740 22 1 -0.3632 0.5766 -0.8507 23 1 -0.3633 0.4484 0.9247 24 1 0.7087 1.1613 3.4843 25 1 0.9567 -0.6231 -3.0216 26 1 1.0857 0.9370 -2.1623 27 1 2.7287 0.2089 -4.2854 28 1 3.2235 1.3619 -3.0030 29 1 3.9266 -1.8943 -4.3474 30 1 4.3563 -2.6823 -2.9473 31 1 6.8999 -0.0221 -3.9926 32 1 3.9267 0.0286 -0.6166 33 1 3.8067 -1.7510 -0.7721 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229283396.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:41 Heat of formation + Delta-G solvation = -80.981759 kcal Electronic energy + Delta-G solvation = -16683.436962 eV Core-core repulsion = 13937.097118 eV Total energy + Delta-G solvation = -2746.339845 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.56592 -38.23659 -36.11082 -34.60056 -32.45939 -30.10830 -28.46463 -27.05962 -25.02287 -23.48971 -21.70383 -19.66484 -19.35038 -17.95257 -16.95947 -16.18486 -15.74759 -15.31937 -15.04491 -14.55449 -13.94233 -13.38752 -13.05635 -12.72260 -12.49732 -11.85136 -11.73687 -11.51190 -11.05876 -10.97215 -10.87072 -10.86461 -10.58886 -10.43238 -10.13980 -10.04257 -9.78687 -8.86378 -8.70479 -8.38392 -7.12785 -5.97108 -4.01630 2.18582 2.96549 3.34402 3.40443 3.44820 4.43004 4.45958 4.67898 4.87672 5.19942 5.30368 5.38139 5.62154 5.79493 5.91674 6.26186 6.38687 6.42385 6.56179 6.65383 6.86630 7.05798 7.12388 7.13317 7.43768 7.53706 7.70947 7.87192 7.87848 8.20001 8.37168 8.60619 9.04694 9.63496 11.09559 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.032177 B = 0.008260 C = 0.007260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.989414 B = 3388.928820 C = 3856.018759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.205 3.795 3 H -0.001 1.001 4 C -0.502 4.502 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.511 5.511 13 C 0.054 3.946 14 C -0.121 4.121 15 C 0.117 3.883 16 N -0.801 5.801 17 C 0.449 3.551 18 O -0.504 6.504 19 O -0.523 6.523 20 C 0.088 3.912 21 H 0.034 0.966 22 H 0.007 0.993 23 H 0.087 0.913 24 H 0.260 0.740 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.345 0.655 30 H 0.346 0.654 31 H 0.404 0.596 32 H 0.067 0.933 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.172 -1.979 -12.605 14.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.099 3.901 3 H 0.017 0.983 4 C -0.541 4.541 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.235 5.235 13 C -0.074 4.074 14 C -0.160 4.160 15 C 0.021 3.979 16 N -0.332 5.332 17 C 0.287 3.713 18 O -0.389 6.389 19 O -0.335 6.335 20 C -0.040 4.040 21 H 0.054 0.946 22 H 0.026 0.974 23 H 0.105 0.895 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.158 0.842 30 H 0.160 0.840 31 H 0.262 0.738 32 H 0.085 0.915 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.831 -2.320 -11.894 13.046 hybrid contribution 2.407 0.799 0.580 2.601 sum 7.238 -1.521 -11.315 13.518 Atomic orbital electron populations 1.21813 0.97445 0.99176 1.00530 1.19498 0.92624 0.91880 0.86118 0.98325 1.21137 1.30867 1.12279 0.89819 0.92039 1.24928 0.95198 0.95098 0.99026 1.69887 1.36937 1.23099 1.23375 0.86530 0.78442 0.80119 0.82538 1.20824 1.21268 1.19822 1.63729 1.07213 1.50223 1.02382 1.22696 0.94975 0.97474 0.92291 1.22849 0.95615 0.96617 1.00886 1.22219 0.84762 0.91086 0.99842 1.58612 1.61904 1.05382 1.07335 1.25236 0.90322 0.76521 0.79177 1.90737 1.69520 1.38623 1.40006 1.84542 1.32602 1.76043 1.40305 1.22759 0.90350 1.02733 0.88194 0.94639 0.97396 0.89493 0.93014 0.90977 0.92898 0.90235 0.91169 0.84156 0.84019 0.73761 0.91453 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 8.87 37.16 0.33 -2.92 16 2 C 0.20 5.25 1.61 -68.86 -0.11 5.14 16 3 H 0.00 -0.02 8.14 -51.93 -0.42 -0.45 16 4 C -0.50 -14.01 7.99 -34.44 -0.28 -14.28 16 5 H 0.06 1.72 7.04 -52.49 -0.37 1.35 16 6 C 0.06 1.64 5.30 -17.81 -0.09 1.55 16 7 N -0.89 -25.83 11.30 55.43 0.63 -25.20 16 8 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.51 -11.11 5.02 -224.68 -1.13 -12.24 16 13 C 0.05 0.98 6.20 -2.84 -0.02 0.96 16 14 C -0.12 -1.83 6.09 -24.91 -0.15 -1.98 16 15 C 0.12 1.82 1.06 -130.61 -0.14 1.68 16 16 N -0.80 -10.45 8.94 1.54 0.01 -10.44 16 17 C 0.45 6.73 7.32 36.01 0.26 6.99 16 18 O -0.50 -9.41 16.50 -18.75 -0.31 -9.72 16 19 O -0.52 -5.61 13.00 -39.25 -0.51 -6.12 16 20 C 0.09 1.78 4.57 -2.29 -0.01 1.77 16 21 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.01 0.16 6.80 -51.93 -0.35 -0.19 16 23 H 0.09 2.35 5.97 -51.93 -0.31 2.04 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.05 0.99 6.54 -51.93 -0.34 0.65 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.08 8.03 -51.93 -0.42 0.66 16 29 H 0.34 3.71 8.78 -39.29 -0.34 3.37 16 30 H 0.35 4.17 9.06 -39.30 -0.36 3.81 16 31 H 0.40 2.70 9.10 45.56 0.41 3.12 16 32 H 0.07 1.56 6.81 -51.93 -0.35 1.20 16 33 H 0.08 1.60 7.81 -51.93 -0.41 1.20 16 LS Contribution 271.46 15.07 4.09 4.09 Total: -1.00 -31.54 271.46 -6.10 -37.64 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -3.66 Total: 6.33 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -0.21 Total: -1.09 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: -0.49 Total: -47.88 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.82 Total: -15.84 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.54 -6.10 -37.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229283396.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.337 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds