Wall clock time and date at job start Mon Mar 30 2020 02:48:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 H 1.08995 * 109.46880 * 2 1
4 4 C 1.50700 * 109.47050 * 120.00003 * 2 1 3
5 5 H 1.08000 * 120.00604 * 119.99748 * 4 2 1
6 6 C 1.37880 * 119.99901 * 299.99936 * 4 2 1
7 7 N 1.31523 * 119.99970 * 0.02562 * 6 4 2
8 8 Si 1.86801 * 120.00223 * 179.97438 * 6 4 2
9 9 H 1.48503 * 109.46792 * 89.99991 * 8 6 4
10 10 H 1.48494 * 109.47212 * 209.99916 * 8 6 4
11 11 H 1.48499 * 109.47073 * 330.00324 * 8 6 4
12 12 N 1.46893 * 109.47026 * 239.99597 * 2 1 3
13 13 C 1.47440 * 111.00083 * 63.00801 * 12 2 1
14 14 C 1.54318 * 107.23729 * 123.25622 * 13 12 2
15 15 C 1.55133 * 103.01904 * 22.28104 * 14 13 12
16 16 N 1.46907 * 110.99257 * 82.47946 * 15 14 13
17 17 C 1.50703 * 110.99253 * 206.25728 * 15 14 13
18 18 O 1.20827 * 119.99826 * 93.54874 * 17 15 14
19 19 O 1.34228 * 119.99983 * 273.54636 * 17 15 14
20 20 C 1.47851 * 110.99847 * 183.84464 * 12 2 1
21 21 H 1.08998 * 109.46582 * 175.86977 * 1 2 3
22 22 H 1.09000 * 109.46648 * 55.87341 * 1 2 3
23 23 H 1.09003 * 109.46891 * 295.86607 * 1 2 3
24 24 H 0.96992 * 119.99879 * 180.02562 * 7 6 4
25 25 H 1.09006 * 109.88748 * 242.66087 * 13 12 2
26 26 H 1.08995 * 109.88852 * 3.84399 * 13 12 2
27 27 H 1.08995 * 110.70809 * 140.66896 * 14 13 12
28 28 H 1.09002 * 110.69999 * 263.89982 * 14 13 12
29 29 H 1.00901 * 110.99429 * 61.44856 * 16 15 14
30 30 H 1.00893 * 111.00058 * 185.40729 * 16 15 14
31 31 H 0.96697 * 117.00031 * 179.97438 * 19 17 15
32 32 H 1.09000 * 110.37366 * 332.47243 * 20 12 2
33 33 H 1.09006 * 110.36931 * 94.81197 * 20 12 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0324 -0.7104 1.2305
5 1 2.6533 -1.5885 1.1315
6 6 1.6993 -0.2393 2.4827
7 7 0.9427 0.8298 2.6034
8 14 2.3213 -1.1203 4.0080
9 1 3.6296 -0.5458 4.4124
10 1 1.3431 -0.9491 5.1120
11 1 2.4858 -2.5661 3.7121
12 7 2.0197 -0.6925 -1.1993
13 6 1.6068 0.0164 -2.4244
14 6 2.8896 0.3464 -3.2162
15 6 3.9096 -0.6909 -2.6771
16 7 3.7546 -1.9838 -3.3572
17 6 5.3210 -0.1798 -2.8104
18 8 5.8434 0.3994 -1.8877
19 8 5.9977 -0.3680 -3.9543
20 6 3.4947 -0.7929 -1.1881
21 1 -0.3632 -1.0250 -0.0740
22 1 -0.3632 0.5766 -0.8507
23 1 -0.3633 0.4484 0.9247
24 1 0.7087 1.1613 3.4843
25 1 0.9567 -0.6231 -3.0216
26 1 1.0857 0.9370 -2.1623
27 1 2.7287 0.2089 -4.2854
28 1 3.2235 1.3619 -3.0030
29 1 3.9266 -1.8943 -4.3474
30 1 4.3563 -2.6823 -2.9473
31 1 6.8999 -0.0221 -3.9926
32 1 3.9267 0.0286 -0.6166
33 1 3.8067 -1.7510 -0.7721
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000229283396.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:48:41
Heat of formation + Delta-G solvation = -80.981759 kcal
Electronic energy + Delta-G solvation = -16683.436962 eV
Core-core repulsion = 13937.097118 eV
Total energy + Delta-G solvation = -2746.339845 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 228.126 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-40.56592 -38.23659 -36.11082 -34.60056 -32.45939 -30.10830 -28.46463 -27.05962
-25.02287 -23.48971 -21.70383 -19.66484 -19.35038 -17.95257 -16.95947 -16.18486
-15.74759 -15.31937 -15.04491 -14.55449 -13.94233 -13.38752 -13.05635 -12.72260
-12.49732 -11.85136 -11.73687 -11.51190 -11.05876 -10.97215 -10.87072 -10.86461
-10.58886 -10.43238 -10.13980 -10.04257 -9.78687 -8.86378 -8.70479 -8.38392
-7.12785 -5.97108 -4.01630 2.18582 2.96549 3.34402 3.40443 3.44820
4.43004 4.45958 4.67898 4.87672 5.19942 5.30368 5.38139 5.62154
5.79493 5.91674 6.26186 6.38687 6.42385 6.56179 6.65383 6.86630
7.05798 7.12388 7.13317 7.43768 7.53706 7.70947 7.87192 7.87848
8.20001 8.37168 8.60619 9.04694 9.63496 11.09559
Molecular weight = 228.13amu
Principal moments of inertia in cm(-1)
A = 0.032177 B = 0.008260 C = 0.007260
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 869.989414 B = 3388.928820 C = 3856.018759
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.205 3.795
3 H -0.001 1.001
4 C -0.502 4.502
5 H 0.061 0.939
6 C 0.058 3.942
7 N -0.894 5.894
8 Si 0.896 3.104
9 H -0.282 1.282
10 H -0.287 1.287
11 H -0.273 1.273
12 N -0.511 5.511
13 C 0.054 3.946
14 C -0.121 4.121
15 C 0.117 3.883
16 N -0.801 5.801
17 C 0.449 3.551
18 O -0.504 6.504
19 O -0.523 6.523
20 C 0.088 3.912
21 H 0.034 0.966
22 H 0.007 0.993
23 H 0.087 0.913
24 H 0.260 0.740
25 H 0.072 0.928
26 H 0.053 0.947
27 H 0.079 0.921
28 H 0.070 0.930
29 H 0.345 0.655
30 H 0.346 0.654
31 H 0.404 0.596
32 H 0.067 0.933
33 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.172 -1.979 -12.605 14.173
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.099 3.901
3 H 0.017 0.983
4 C -0.541 4.541
5 H 0.080 0.920
6 C -0.143 4.143
7 N -0.533 5.533
8 Si 0.724 3.276
9 H -0.208 1.208
10 H -0.213 1.213
11 H -0.198 1.198
12 N -0.235 5.235
13 C -0.074 4.074
14 C -0.160 4.160
15 C 0.021 3.979
16 N -0.332 5.332
17 C 0.287 3.713
18 O -0.389 6.389
19 O -0.335 6.335
20 C -0.040 4.040
21 H 0.054 0.946
22 H 0.026 0.974
23 H 0.105 0.895
24 H 0.070 0.930
25 H 0.090 0.910
26 H 0.071 0.929
27 H 0.098 0.902
28 H 0.088 0.912
29 H 0.158 0.842
30 H 0.160 0.840
31 H 0.262 0.738
32 H 0.085 0.915
33 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 4.831 -2.320 -11.894 13.046
hybrid contribution 2.407 0.799 0.580 2.601
sum 7.238 -1.521 -11.315 13.518
Atomic orbital electron populations
1.21813 0.97445 0.99176 1.00530 1.19498 0.92624 0.91880 0.86118
0.98325 1.21137 1.30867 1.12279 0.89819 0.92039 1.24928 0.95198
0.95098 0.99026 1.69887 1.36937 1.23099 1.23375 0.86530 0.78442
0.80119 0.82538 1.20824 1.21268 1.19822 1.63729 1.07213 1.50223
1.02382 1.22696 0.94975 0.97474 0.92291 1.22849 0.95615 0.96617
1.00886 1.22219 0.84762 0.91086 0.99842 1.58612 1.61904 1.05382
1.07335 1.25236 0.90322 0.76521 0.79177 1.90737 1.69520 1.38623
1.40006 1.84542 1.32602 1.76043 1.40305 1.22759 0.90350 1.02733
0.88194 0.94639 0.97396 0.89493 0.93014 0.90977 0.92898 0.90235
0.91169 0.84156 0.84019 0.73761 0.91453 0.90387
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.25 8.87 37.16 0.33 -2.92 16
2 C 0.20 5.25 1.61 -68.86 -0.11 5.14 16
3 H 0.00 -0.02 8.14 -51.93 -0.42 -0.45 16
4 C -0.50 -14.01 7.99 -34.44 -0.28 -14.28 16
5 H 0.06 1.72 7.04 -52.49 -0.37 1.35 16
6 C 0.06 1.64 5.30 -17.81 -0.09 1.55 16
7 N -0.89 -25.83 11.30 55.43 0.63 -25.20 16
8 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16
9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16
12 N -0.51 -11.11 5.02 -224.68 -1.13 -12.24 16
13 C 0.05 0.98 6.20 -2.84 -0.02 0.96 16
14 C -0.12 -1.83 6.09 -24.91 -0.15 -1.98 16
15 C 0.12 1.82 1.06 -130.61 -0.14 1.68 16
16 N -0.80 -10.45 8.94 1.54 0.01 -10.44 16
17 C 0.45 6.73 7.32 36.01 0.26 6.99 16
18 O -0.50 -9.41 16.50 -18.75 -0.31 -9.72 16
19 O -0.52 -5.61 13.00 -39.25 -0.51 -6.12 16
20 C 0.09 1.78 4.57 -2.29 -0.01 1.77 16
21 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16
22 H 0.01 0.16 6.80 -51.93 -0.35 -0.19 16
23 H 0.09 2.35 5.97 -51.93 -0.31 2.04 16
24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16
25 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16
26 H 0.05 0.99 6.54 -51.93 -0.34 0.65 16
27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16
28 H 0.07 1.08 8.03 -51.93 -0.42 0.66 16
29 H 0.34 3.71 8.78 -39.29 -0.34 3.37 16
30 H 0.35 4.17 9.06 -39.30 -0.36 3.81 16
31 H 0.40 2.70 9.10 45.56 0.41 3.12 16
32 H 0.07 1.56 6.81 -51.93 -0.35 1.20 16
33 H 0.08 1.60 7.81 -51.93 -0.41 1.20 16
LS Contribution 271.46 15.07 4.09 4.09
Total: -1.00 -31.54 271.46 -6.10 -37.64
By element:
Atomic # 1 Polarization: 9.99 SS G_CDS: -3.66 Total: 6.33 kcal
Atomic # 6 Polarization: -0.88 SS G_CDS: -0.21 Total: -1.09 kcal
Atomic # 7 Polarization: -47.39 SS G_CDS: -0.49 Total: -47.88 kcal
Atomic # 8 Polarization: -15.02 SS G_CDS: -0.82 Total: -15.84 kcal
Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal
Total LS contribution 4.09 Total: 4.09 kcal
Total: -31.54 -6.10 -37.64 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000229283396.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.337 kcal
(2) G-P(sol) polarization free energy of solvation -31.540 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.877 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.104 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.645 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.982 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds