Wall clock time and date at job start Mon Mar 30 2020 02:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.46880 * 2 1 4 4 C 1.50700 * 109.47050 * 120.00003 * 2 1 3 5 5 H 1.08000 * 120.00604 * 119.99748 * 4 2 1 6 6 C 1.37880 * 119.99901 * 299.99936 * 4 2 1 7 7 N 1.31523 * 119.99970 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00223 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46792 * 89.99991 * 8 6 4 10 10 H 1.48494 * 109.47212 * 209.99916 * 8 6 4 11 11 H 1.48499 * 109.47073 * 330.00324 * 8 6 4 12 12 N 1.46893 * 109.47026 * 239.99597 * 2 1 3 13 13 C 1.47440 * 111.00083 * 63.00801 * 12 2 1 14 14 C 1.54318 * 107.23729 * 123.25622 * 13 12 2 15 15 C 1.55133 * 103.01904 * 22.28104 * 14 13 12 16 16 N 1.46907 * 110.99257 * 82.47946 * 15 14 13 17 17 C 1.50703 * 110.99253 * 206.25728 * 15 14 13 18 18 O 1.20827 * 119.99826 * 93.54874 * 17 15 14 19 19 O 1.34228 * 119.99983 * 273.54636 * 17 15 14 20 20 C 1.47851 * 110.99847 * 183.84464 * 12 2 1 21 21 H 1.08998 * 109.46582 * 175.86977 * 1 2 3 22 22 H 1.09000 * 109.46648 * 55.87341 * 1 2 3 23 23 H 1.09003 * 109.46891 * 295.86607 * 1 2 3 24 24 H 0.96992 * 119.99879 * 180.02562 * 7 6 4 25 25 H 1.09006 * 109.88748 * 242.66087 * 13 12 2 26 26 H 1.08995 * 109.88852 * 3.84399 * 13 12 2 27 27 H 1.08995 * 110.70809 * 140.66896 * 14 13 12 28 28 H 1.09002 * 110.69999 * 263.89982 * 14 13 12 29 29 H 1.00901 * 110.99429 * 61.44856 * 16 15 14 30 30 H 1.00893 * 111.00058 * 185.40729 * 16 15 14 31 31 H 0.96697 * 117.00031 * 179.97438 * 19 17 15 32 32 H 1.09000 * 110.37366 * 332.47243 * 20 12 2 33 33 H 1.09006 * 110.36931 * 94.81197 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8298 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.6296 -0.5458 4.4124 10 1 1.3431 -0.9491 5.1120 11 1 2.4858 -2.5661 3.7121 12 7 2.0197 -0.6925 -1.1993 13 6 1.6068 0.0164 -2.4244 14 6 2.8896 0.3464 -3.2162 15 6 3.9096 -0.6909 -2.6771 16 7 3.7546 -1.9838 -3.3572 17 6 5.3210 -0.1798 -2.8104 18 8 5.8434 0.3994 -1.8877 19 8 5.9977 -0.3680 -3.9543 20 6 3.4947 -0.7929 -1.1881 21 1 -0.3632 -1.0250 -0.0740 22 1 -0.3632 0.5766 -0.8507 23 1 -0.3633 0.4484 0.9247 24 1 0.7087 1.1613 3.4843 25 1 0.9567 -0.6231 -3.0216 26 1 1.0857 0.9370 -2.1623 27 1 2.7287 0.2089 -4.2854 28 1 3.2235 1.3619 -3.0030 29 1 3.9266 -1.8943 -4.3474 30 1 4.3563 -2.6823 -2.9473 31 1 6.8999 -0.0221 -3.9926 32 1 3.9267 0.0286 -0.6166 33 1 3.8067 -1.7510 -0.7721 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229283396.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:41 Heat of formation + Delta-G solvation = -107.611731 kcal Electronic energy + Delta-G solvation = -16684.591725 eV Core-core repulsion = 13937.097118 eV Total energy + Delta-G solvation = -2747.494607 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.80735 -39.69476 -37.22967 -36.29003 -34.25153 -31.74337 -30.09823 -28.54222 -27.07297 -24.85619 -23.35985 -21.14333 -20.90992 -19.12072 -18.46292 -18.02560 -17.07419 -16.72656 -16.45881 -16.18585 -15.51503 -14.88170 -14.60592 -14.42270 -14.07798 -13.58322 -13.30741 -12.89291 -12.72285 -12.65497 -12.60829 -12.33547 -12.17740 -12.12324 -11.96248 -11.86438 -11.65068 -10.92036 -10.52572 -9.79754 -8.91311 -8.11785 -6.23539 0.99333 1.40823 1.40995 1.52209 1.85783 2.42004 3.15945 3.25468 3.35770 3.56364 3.63311 4.12479 4.38876 4.47837 4.71983 4.78629 4.79976 4.84771 4.93682 5.07237 5.16293 5.24791 5.45104 5.49290 5.72300 5.78649 5.99649 6.25319 6.35769 6.53977 6.70262 6.85550 6.90699 7.45546 8.94093 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.032177 B = 0.008260 C = 0.007260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.989414 B = 3388.928820 C = 3856.018759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.211 3.789 3 H -0.039 1.039 4 C -0.520 4.520 5 H 0.054 0.946 6 C 0.010 3.990 7 N -0.919 5.919 8 Si 0.958 3.042 9 H -0.280 1.280 10 H -0.279 1.279 11 H -0.267 1.267 12 N -0.517 5.517 13 C 0.049 3.951 14 C -0.112 4.112 15 C 0.128 3.872 16 N -0.797 5.797 17 C 0.461 3.539 18 O -0.548 6.548 19 O -0.501 6.501 20 C 0.087 3.913 21 H 0.034 0.966 22 H 0.030 0.970 23 H 0.061 0.939 24 H 0.262 0.738 25 H 0.089 0.911 26 H 0.042 0.958 27 H 0.118 0.882 28 H 0.064 0.936 29 H 0.363 0.637 30 H 0.353 0.647 31 H 0.427 0.573 32 H 0.029 0.971 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.773 -2.979 -14.374 16.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.103 3.897 3 H -0.022 1.022 4 C -0.558 4.558 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.559 5.559 8 Si 0.783 3.217 9 H -0.206 1.206 10 H -0.205 1.205 11 H -0.192 1.192 12 N -0.241 5.241 13 C -0.079 4.079 14 C -0.151 4.151 15 C 0.032 3.968 16 N -0.332 5.332 17 C 0.301 3.699 18 O -0.437 6.437 19 O -0.314 6.314 20 C -0.042 4.042 21 H 0.053 0.947 22 H 0.049 0.951 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.107 0.893 26 H 0.061 0.939 27 H 0.137 0.863 28 H 0.083 0.917 29 H 0.180 0.820 30 H 0.168 0.832 31 H 0.289 0.711 32 H 0.048 0.952 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.453 -3.336 -13.724 15.140 hybrid contribution 2.258 1.097 1.031 2.714 sum 7.711 -2.239 -12.693 15.020 Atomic orbital electron populations 1.21621 0.96822 0.99129 1.00184 1.19274 0.93051 0.89859 0.87472 1.02200 1.21409 1.30950 1.12239 0.91195 0.92755 1.25713 0.95396 0.95831 1.01911 1.70009 1.37714 1.24174 1.24047 0.85556 0.77918 0.79172 0.79019 1.20581 1.20485 1.19175 1.63626 1.08165 1.50038 1.02318 1.22793 0.96749 0.97073 0.91258 1.22814 0.93541 0.96121 1.02590 1.21809 0.85627 0.92594 0.96773 1.58543 1.62246 1.03958 1.08407 1.24932 0.90108 0.75415 0.79420 1.90742 1.70466 1.40662 1.41791 1.84458 1.34048 1.75302 1.37606 1.22568 0.89441 1.00631 0.91530 0.94704 0.95075 0.92075 0.92904 0.89253 0.93927 0.86344 0.91722 0.82050 0.83211 0.71107 0.95226 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.99 8.87 71.98 0.64 -5.35 16 2 C 0.21 11.12 1.61 44.17 0.07 11.19 16 3 H -0.04 -2.34 8.14 -2.39 -0.02 -2.36 16 4 C -0.52 -29.75 7.99 25.60 0.20 -29.54 16 5 H 0.05 3.11 7.04 -2.91 -0.02 3.09 16 6 C 0.01 0.57 5.30 84.65 0.45 1.02 16 7 N -0.92 -54.39 11.30 21.45 0.24 -54.15 16 8 Si 0.96 45.19 29.54 68.60 2.03 47.22 16 9 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 N -0.52 -22.60 5.02 -864.74 -4.34 -26.95 16 13 C 0.05 1.71 6.20 86.65 0.54 2.25 16 14 C -0.11 -3.14 6.09 31.77 0.19 -2.94 16 15 C 0.13 3.78 1.06 4.16 0.00 3.78 16 16 N -0.80 -18.40 8.94 -149.04 -1.33 -19.73 16 17 C 0.46 12.98 7.32 71.24 0.52 13.50 16 18 O -0.55 -20.35 16.50 21.96 0.36 -19.99 16 19 O -0.50 -8.95 13.00 -51.40 -0.67 -9.62 16 20 C 0.09 3.58 4.57 86.77 0.40 3.97 16 21 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.03 1.36 6.80 -2.39 -0.02 1.34 16 23 H 0.06 3.39 5.97 -2.39 -0.01 3.37 16 24 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 25 H 0.09 2.84 8.14 -2.38 -0.02 2.82 16 26 H 0.04 1.57 6.54 -2.39 -0.02 1.56 16 27 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.06 1.90 8.03 -2.39 -0.02 1.88 16 29 H 0.36 6.25 8.78 -89.69 -0.79 5.46 16 30 H 0.35 7.55 9.06 -89.70 -0.81 6.74 16 31 H 0.43 4.13 9.10 -74.06 -0.67 3.46 16 32 H 0.03 1.43 6.81 -2.39 -0.02 1.42 16 33 H 0.07 2.86 7.81 -2.38 -0.02 2.84 16 Total: -1.00 -69.82 271.46 -1.82 -71.64 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -1.12 Total: 13.69 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 3.02 Total: -2.11 kcal Atomic # 7 Polarization: -95.39 SS G_CDS: -5.43 Total: -100.82 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.31 Total: -29.60 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -69.82 -1.82 -71.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229283396.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.972 kcal (2) G-P(sol) polarization free energy of solvation -69.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds