Wall clock time and date at job start Mon Mar 30 2020 03:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.48539 * 2 1 4 4 C 1.53093 * 109.48756 * 239.97352 * 2 1 3 5 5 C 1.53188 * 109.16163 * 182.40286 * 4 2 1 6 6 H 1.09001 * 109.61000 * 176.89333 * 5 4 2 7 7 O 1.42895 * 109.54422 * 297.11514 * 5 4 2 8 8 C 1.42904 * 113.99914 * 269.55833 * 7 5 4 9 9 C 1.53001 * 109.47293 * 179.97438 * 8 7 5 10 10 C 1.50694 * 109.47168 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00563 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.53174 * 109.03559 * 56.98202 * 5 4 2 19 19 C 1.53100 * 109.16304 * 303.01804 * 18 5 4 20 20 H 1.08994 * 109.48008 * 297.62784 * 19 18 5 21 21 C 1.53001 * 109.47925 * 177.59248 * 19 18 5 22 22 O 1.42903 * 109.41296 * 57.61068 * 19 18 5 23 23 H 1.09003 * 109.47142 * 299.97273 * 1 2 3 24 24 H 1.08994 * 109.47142 * 59.97390 * 1 2 3 25 25 H 1.09003 * 109.47427 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.52556 * 62.50116 * 4 2 1 27 27 H 1.08993 * 109.52307 * 302.30436 * 4 2 1 28 28 H 1.09002 * 109.47155 * 59.99999 * 8 7 5 29 29 H 1.08998 * 109.46998 * 299.99564 * 8 7 5 30 30 H 1.09007 * 109.46922 * 59.99502 * 9 8 7 31 31 H 1.09003 * 109.46836 * 300.00257 * 9 8 7 32 32 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 33 33 H 1.09002 * 109.52360 * 62.92311 * 18 5 4 34 34 H 1.08995 * 109.52377 * 183.05080 * 18 5 4 35 35 H 1.08999 * 109.47118 * 60.00076 * 21 19 18 36 36 H 1.09000 * 109.46881 * 179.97438 * 21 19 18 37 37 H 1.09005 * 109.47309 * 300.00078 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0407 -0.7222 -1.2495 5 6 3.5713 -0.7706 -1.2120 6 1 3.9408 -1.3314 -2.0705 7 8 4.0927 0.5593 -1.2495 8 6 4.3446 1.0479 -2.5686 9 6 4.8968 2.4725 -2.4880 10 6 5.1630 2.9875 -3.8790 11 1 4.9584 2.3616 -4.7350 12 6 5.6678 4.2579 -4.0589 13 7 5.9165 5.0204 -3.0166 14 14 5.9984 4.8960 -5.7831 15 1 7.3889 4.5562 -6.1786 16 1 5.0459 4.2687 -6.7342 17 1 5.8233 6.3705 -5.8073 18 6 4.0178 -1.4597 0.0810 19 6 3.4307 -0.7090 1.2792 20 1 3.8191 0.3092 1.2960 21 6 3.8227 -1.4263 2.5726 22 8 2.0066 -0.6742 1.1664 23 1 -0.3633 0.5134 0.8902 24 1 -0.3633 0.5142 -0.8897 25 1 -0.3634 -1.0277 -0.0005 26 1 1.7151 -0.1843 -2.1399 27 1 1.6446 -1.7374 -1.2709 28 1 3.4155 1.0505 -3.1386 29 1 5.0719 0.4034 -3.0620 30 1 5.8258 2.4704 -1.9177 31 1 4.1691 3.1169 -1.9946 32 1 6.2720 5.9140 -3.1432 33 1 3.6616 -2.4899 0.0865 34 1 5.1060 -1.4503 0.1418 35 1 4.9090 -1.4537 2.6579 36 1 3.4050 -0.8914 3.4256 37 1 3.4337 -2.4444 2.5557 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252791163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:22 Heat of formation + Delta-G solvation = -122.236206 kcal Electronic energy + Delta-G solvation = -16463.336428 eV Core-core repulsion = 13818.747999 eV Total energy + Delta-G solvation = -2644.588428 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.67246 -36.89316 -33.58159 -33.40303 -32.18372 -29.89039 -28.92703 -26.34242 -24.58235 -22.56544 -21.68665 -20.87230 -19.81664 -16.59012 -16.30164 -15.71164 -15.48089 -15.18300 -14.80997 -14.37482 -13.67786 -13.39352 -12.98941 -12.56751 -12.37171 -12.19609 -11.98403 -11.91856 -11.73049 -11.63469 -11.22275 -10.97617 -10.77907 -10.73751 -10.51395 -10.25863 -10.07753 -9.47942 -9.24755 -9.12115 -8.84698 -8.37439 -6.04988 -4.08738 3.29446 3.35425 3.38471 3.83788 4.22127 4.48577 4.83984 4.99541 5.02918 5.03256 5.31126 5.35323 5.37233 5.55734 5.65016 5.66125 5.70402 5.75560 5.82282 5.92807 6.04997 6.07999 6.11822 6.18464 6.25819 6.31642 6.35173 6.40155 6.87204 7.49204 7.52867 7.76737 7.81241 8.09229 8.34200 8.97856 9.55137 11.06657 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.038312 B = 0.005446 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.674240 B = 5140.466844 C = 5363.497577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.092 3.908 3 H 0.069 0.931 4 C -0.169 4.169 5 C 0.083 3.917 6 H 0.058 0.942 7 O -0.383 6.383 8 C 0.069 3.931 9 C 0.026 3.974 10 C -0.524 4.524 11 H 0.056 0.944 12 C 0.059 3.941 13 N -0.891 5.891 14 Si 0.896 3.104 15 H -0.280 1.280 16 H -0.273 1.273 17 H -0.285 1.285 18 C -0.143 4.143 19 C 0.090 3.910 20 H 0.069 0.931 21 C -0.143 4.143 22 O -0.384 6.384 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.262 0.738 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.916 -12.654 6.682 15.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.034 3.966 3 H 0.087 0.913 4 C -0.207 4.207 5 C 0.024 3.976 6 H 0.076 0.924 7 O -0.303 6.303 8 C -0.007 4.007 9 C -0.011 4.011 10 C -0.563 4.563 11 H 0.074 0.926 12 C -0.142 4.142 13 N -0.530 5.530 14 Si 0.724 3.276 15 H -0.206 1.206 16 H -0.198 1.198 17 H -0.211 1.211 18 C -0.181 4.181 19 C 0.032 3.968 20 H 0.087 0.913 21 C -0.200 4.200 22 O -0.304 6.304 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.940 -12.444 7.030 15.889 hybrid contribution 0.371 0.363 -1.506 1.593 sum -6.569 -12.081 5.524 14.820 Atomic orbital electron populations 1.21760 0.93612 1.02278 1.02314 1.21947 0.94144 0.96083 0.84389 0.91313 1.22671 0.97056 1.01527 0.99438 1.22005 0.92368 0.85836 0.97363 0.92355 1.87955 1.84047 1.28025 1.30249 1.22913 0.97706 0.98440 0.81608 1.19058 0.96732 0.87908 0.97403 1.21053 1.43569 0.99612 0.92045 0.92602 1.24995 0.95440 0.96774 0.97038 1.69982 1.44307 1.09333 1.29348 0.86531 0.78655 0.78046 0.84396 1.20561 1.19835 1.21091 1.22289 1.01825 0.99162 0.94817 1.21976 0.81102 0.99517 0.94173 0.91279 1.21766 1.01203 1.00635 0.96382 1.87820 1.21030 1.78191 1.43327 0.92054 0.91185 0.92309 0.90672 0.90999 0.94815 0.94761 0.95818 0.95819 0.92832 0.90630 0.90377 0.91200 0.92048 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.56 37.16 0.36 -1.35 16 2 C 0.09 1.35 3.12 -26.69 -0.08 1.27 16 3 H 0.07 1.16 7.82 -51.93 -0.41 0.76 16 4 C -0.17 -2.40 5.12 -26.59 -0.14 -2.54 16 5 C 0.08 1.30 2.95 -26.54 -0.08 1.22 16 6 H 0.06 0.87 7.79 -51.93 -0.40 0.46 16 7 O -0.38 -7.63 8.95 -35.23 -0.32 -7.94 16 8 C 0.07 1.51 5.69 37.16 0.21 1.72 16 9 C 0.03 0.70 5.34 -27.89 -0.15 0.55 16 10 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 11 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 12 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 13 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 14 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 C -0.14 -1.95 5.14 -26.59 -0.14 -2.09 16 19 C 0.09 1.27 3.12 -26.68 -0.08 1.19 16 20 H 0.07 1.12 7.82 -51.93 -0.41 0.72 16 21 C -0.14 -1.60 9.56 37.16 0.36 -1.24 16 22 O -0.38 -5.81 10.05 -35.23 -0.35 -6.16 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.08 7.87 -51.93 -0.41 0.68 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.03 0.71 7.87 -51.93 -0.41 0.30 16 29 H 0.03 0.72 8.09 -51.93 -0.42 0.30 16 30 H 0.02 0.68 8.14 -51.92 -0.42 0.25 16 31 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 300.17 15.07 4.52 4.52 Total: -1.00 -30.54 300.17 -7.23 -37.77 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -6.64 Total: -3.57 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -0.15 Total: -14.93 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: 0.74 Total: -26.24 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.67 Total: -14.11 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.54 -7.23 -37.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252791163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.470 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds