Wall clock time and date at job start Mon Mar 30 2020 03:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.48539 * 2 1 4 4 C 1.53093 * 109.48756 * 239.97352 * 2 1 3 5 5 C 1.53188 * 109.16163 * 182.40286 * 4 2 1 6 6 H 1.09001 * 109.61000 * 176.89333 * 5 4 2 7 7 O 1.42895 * 109.54422 * 297.11514 * 5 4 2 8 8 C 1.42904 * 113.99914 * 269.55833 * 7 5 4 9 9 C 1.53001 * 109.47293 * 179.97438 * 8 7 5 10 10 C 1.50694 * 109.47168 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00563 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.53174 * 109.03559 * 56.98202 * 5 4 2 19 19 C 1.53100 * 109.16304 * 303.01804 * 18 5 4 20 20 H 1.08994 * 109.48008 * 297.62784 * 19 18 5 21 21 C 1.53001 * 109.47925 * 177.59248 * 19 18 5 22 22 O 1.42903 * 109.41296 * 57.61068 * 19 18 5 23 23 H 1.09003 * 109.47142 * 299.97273 * 1 2 3 24 24 H 1.08994 * 109.47142 * 59.97390 * 1 2 3 25 25 H 1.09003 * 109.47427 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.52556 * 62.50116 * 4 2 1 27 27 H 1.08993 * 109.52307 * 302.30436 * 4 2 1 28 28 H 1.09002 * 109.47155 * 59.99999 * 8 7 5 29 29 H 1.08998 * 109.46998 * 299.99564 * 8 7 5 30 30 H 1.09007 * 109.46922 * 59.99502 * 9 8 7 31 31 H 1.09003 * 109.46836 * 300.00257 * 9 8 7 32 32 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 33 33 H 1.09002 * 109.52360 * 62.92311 * 18 5 4 34 34 H 1.08995 * 109.52377 * 183.05080 * 18 5 4 35 35 H 1.08999 * 109.47118 * 60.00076 * 21 19 18 36 36 H 1.09000 * 109.46881 * 179.97438 * 21 19 18 37 37 H 1.09005 * 109.47309 * 300.00078 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0407 -0.7222 -1.2495 5 6 3.5713 -0.7706 -1.2120 6 1 3.9408 -1.3314 -2.0705 7 8 4.0927 0.5593 -1.2495 8 6 4.3446 1.0479 -2.5686 9 6 4.8968 2.4725 -2.4880 10 6 5.1630 2.9875 -3.8790 11 1 4.9584 2.3616 -4.7350 12 6 5.6678 4.2579 -4.0589 13 7 5.9165 5.0204 -3.0166 14 14 5.9984 4.8960 -5.7831 15 1 7.3889 4.5562 -6.1786 16 1 5.0459 4.2687 -6.7342 17 1 5.8233 6.3705 -5.8073 18 6 4.0178 -1.4597 0.0810 19 6 3.4307 -0.7090 1.2792 20 1 3.8191 0.3092 1.2960 21 6 3.8227 -1.4263 2.5726 22 8 2.0066 -0.6742 1.1664 23 1 -0.3633 0.5134 0.8902 24 1 -0.3633 0.5142 -0.8897 25 1 -0.3634 -1.0277 -0.0005 26 1 1.7151 -0.1843 -2.1399 27 1 1.6446 -1.7374 -1.2709 28 1 3.4155 1.0505 -3.1386 29 1 5.0719 0.4034 -3.0620 30 1 5.8258 2.4704 -1.9177 31 1 4.1691 3.1169 -1.9946 32 1 6.2720 5.9140 -3.1432 33 1 3.6616 -2.4899 0.0865 34 1 5.1060 -1.4503 0.1418 35 1 4.9090 -1.4537 2.6579 36 1 3.4050 -0.8914 3.4256 37 1 3.4337 -2.4444 2.5557 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252791163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:21 Heat of formation + Delta-G solvation = -141.020134 kcal Electronic energy + Delta-G solvation = -16464.150960 eV Core-core repulsion = 13818.747999 eV Total energy + Delta-G solvation = -2645.402961 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.89039 -38.37299 -35.45728 -34.63086 -33.63755 -31.68614 -30.14753 -27.40851 -26.62086 -23.74072 -22.95436 -22.67996 -21.06811 -18.64751 -17.43386 -17.15902 -16.87145 -16.66259 -16.54648 -15.87380 -15.05508 -14.69589 -14.44460 -13.98268 -13.80848 -13.47272 -13.15098 -13.06419 -12.95888 -12.83179 -12.74718 -12.65675 -12.44673 -12.35133 -11.87171 -11.78615 -11.50707 -11.38688 -11.18802 -10.67010 -10.42833 -10.21561 -8.25417 -6.38921 1.40010 1.42374 1.53553 2.36219 2.74162 2.88858 3.08567 3.72825 3.83590 3.88088 3.93704 4.25452 4.27983 4.39037 4.41986 4.49556 4.58022 4.64261 4.72333 4.76975 4.77827 4.89267 4.92471 4.99365 5.06366 5.10747 5.23169 5.26629 5.34364 5.36604 5.55549 5.71560 6.09923 6.34170 6.43717 6.77218 7.31258 8.87720 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.038312 B = 0.005446 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.674240 B = 5140.466844 C = 5363.497577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.087 3.913 3 H 0.033 0.967 4 C -0.164 4.164 5 C 0.070 3.930 6 H 0.072 0.928 7 O -0.403 6.403 8 C 0.087 3.913 9 C 0.030 3.970 10 C -0.546 4.546 11 H 0.067 0.933 12 C 0.000 4.000 13 N -0.933 5.933 14 Si 0.975 3.025 15 H -0.270 1.270 16 H -0.260 1.260 17 H -0.281 1.281 18 C -0.138 4.138 19 C 0.083 3.917 20 H 0.036 0.964 21 C -0.136 4.136 22 O -0.388 6.388 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.043 0.957 29 H 0.045 0.955 30 H -0.008 1.008 31 H -0.009 1.009 32 H 0.266 0.734 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.441 -14.377 5.560 17.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.202 4.202 5 C 0.012 3.988 6 H 0.090 0.910 7 O -0.323 6.323 8 C 0.011 3.989 9 C -0.008 4.008 10 C -0.584 4.584 11 H 0.086 0.914 12 C -0.198 4.198 13 N -0.572 5.572 14 Si 0.798 3.202 15 H -0.195 1.195 16 H -0.184 1.184 17 H -0.206 1.206 18 C -0.176 4.176 19 C 0.026 3.974 20 H 0.054 0.946 21 C -0.193 4.193 22 O -0.308 6.308 23 H 0.080 0.920 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.116 0.884 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.011 0.989 31 H 0.009 0.991 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.474 -14.191 5.916 17.095 hybrid contribution 0.527 0.885 -1.066 1.482 sum -6.946 -13.306 4.850 15.775 Atomic orbital electron populations 1.21743 0.91367 1.03438 1.02861 1.22001 0.95947 0.94340 0.84819 0.94864 1.22645 0.95902 1.02821 0.98816 1.22382 0.93446 0.83824 0.99138 0.91008 1.87930 1.84645 1.30786 1.28948 1.22474 0.98012 0.95570 0.82830 1.18914 0.94583 0.90891 0.96376 1.21474 1.43772 1.00321 0.92834 0.91432 1.26053 0.94837 0.96980 1.01902 1.70131 1.45062 1.09865 1.32186 0.85307 0.79023 0.77340 0.78519 1.19510 1.18353 1.20650 1.22304 1.02028 1.00052 0.93197 1.22080 0.80757 0.98364 0.96237 0.94628 1.21749 1.02138 1.00915 0.94540 1.87822 1.21493 1.77920 1.43593 0.91957 0.90298 0.90740 0.91051 0.88392 0.93884 0.93705 0.98946 0.99053 0.92536 0.87892 0.90141 0.89878 0.92059 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.56 71.98 0.69 -2.40 16 2 C 0.09 2.52 3.12 30.62 0.10 2.61 16 3 H 0.03 1.19 7.82 -2.39 -0.02 1.17 16 4 C -0.16 -4.42 5.12 30.69 0.16 -4.26 16 5 C 0.07 2.10 2.95 30.72 0.09 2.19 16 6 H 0.07 1.98 7.79 -2.39 -0.02 1.96 16 7 O -0.40 -16.34 8.95 -148.98 -1.33 -17.67 16 8 C 0.09 3.84 5.69 71.98 0.41 4.25 16 9 C 0.03 1.65 5.34 29.85 0.16 1.81 16 10 C -0.55 -31.51 9.11 25.60 0.23 -31.28 16 11 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 12 C 0.00 0.03 5.46 84.66 0.46 0.49 16 13 N -0.93 -57.81 13.29 21.45 0.28 -57.53 16 14 Si 0.97 44.05 29.54 68.60 2.03 46.08 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 16 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 18 C -0.14 -3.54 5.14 30.69 0.16 -3.38 16 19 C 0.08 2.32 3.12 30.63 0.10 2.42 16 20 H 0.04 1.21 7.82 -2.39 -0.02 1.20 16 21 C -0.14 -2.84 9.56 71.98 0.69 -2.15 16 22 O -0.39 -11.44 10.05 -148.98 -1.50 -12.94 16 23 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 1.97 7.87 -2.39 -0.02 1.95 16 27 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.04 1.80 7.87 -2.39 -0.02 1.78 16 29 H 0.04 1.87 8.09 -2.39 -0.02 1.85 16 30 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 31 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 32 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 33 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -66.89 300.17 3.72 -63.17 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 1.00 Total: 8.57 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 3.24 Total: -29.69 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.28 Total: -57.53 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -2.83 Total: -30.61 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -66.89 3.72 -63.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252791163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.847 kcal (2) G-P(sol) polarization free energy of solvation -66.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds