Wall clock time and date at job start Mon Mar 30 2020 03:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47370 * 2 1 4 4 C 1.53004 * 109.46927 * 240.00074 * 2 1 3 5 5 C 1.53004 * 109.47572 * 120.00203 * 2 1 3 6 6 C 1.52997 * 109.47070 * 67.93333 * 5 2 1 7 7 C 1.52995 * 109.62886 * 67.21610 * 6 5 2 8 8 O 1.43371 * 109.63332 * 306.82247 * 6 5 2 9 9 C 1.44193 * 107.29100 * 239.45286 * 8 6 5 10 10 C 1.54907 * 103.07420 * 338.56157 * 9 8 6 11 11 H 1.08998 * 110.98135 * 277.41415 * 10 9 8 12 12 C 1.50699 * 110.97672 * 153.67056 * 10 9 8 13 13 H 1.07999 * 119.99973 * 359.97438 * 12 10 9 14 14 C 1.37881 * 120.00399 * 180.02562 * 12 10 9 15 15 N 1.31522 * 119.99542 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00482 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46974 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47278 * 119.99899 * 16 14 12 19 19 H 1.48497 * 109.47092 * 240.00129 * 16 14 12 20 20 O 1.43748 * 109.63254 * 187.45942 * 6 5 2 21 21 H 1.09002 * 109.46729 * 287.22194 * 1 2 3 22 22 H 1.08990 * 109.47421 * 47.22684 * 1 2 3 23 23 H 1.08999 * 109.46822 * 167.23198 * 1 2 3 24 24 H 1.08993 * 109.47530 * 180.02562 * 3 2 1 25 25 H 1.09009 * 109.46953 * 300.00240 * 3 2 1 26 26 H 1.08998 * 109.47102 * 59.99976 * 3 2 1 27 27 H 1.08996 * 109.47096 * 323.65309 * 4 2 1 28 28 H 1.09001 * 109.47024 * 83.64819 * 4 2 1 29 29 H 1.09004 * 109.47142 * 203.64670 * 4 2 1 30 30 H 1.09001 * 109.46790 * 307.93711 * 5 2 1 31 31 H 1.08994 * 109.46881 * 187.93516 * 5 2 1 32 32 H 1.09004 * 109.47526 * 273.59857 * 7 6 5 33 33 H 1.08993 * 109.47232 * 33.60001 * 7 6 5 34 34 H 1.09000 * 109.47225 * 153.60190 * 7 6 5 35 35 H 1.08999 * 110.69288 * 220.16672 * 9 8 6 36 36 H 1.08997 * 110.69089 * 96.96154 * 9 8 6 37 37 H 0.96997 * 119.99625 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.6992 -2.2097 1.1536 7 6 2.5043 -2.8496 0.0208 8 8 0.2975 -2.3674 0.8971 9 6 -0.2535 -3.1366 1.9852 10 6 0.9868 -3.8606 2.5658 11 1 1.2170 -4.7597 1.9942 12 6 0.7874 -4.1876 4.0233 13 1 -0.1333 -3.9141 4.5170 14 6 1.7809 -4.8351 4.7268 15 7 2.9024 -5.1678 4.1256 16 14 1.5341 -5.2399 6.5336 17 1 0.1971 -4.7625 6.9697 18 1 1.6233 -6.7093 6.7284 19 1 2.5857 -4.5690 7.3393 20 8 2.0185 -2.8591 2.3957 21 1 -0.3633 0.3043 0.9816 22 1 -0.3634 0.6978 -0.7543 23 1 -0.3633 -1.0023 -0.2271 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.3807 -1.5579 -1.4803 28 1 2.0539 -0.0269 -2.0894 29 1 3.0486 -1.0926 -1.0681 30 1 1.5656 -0.2960 2.1335 31 1 3.1208 -0.6000 1.3229 32 1 1.9669 -2.7292 -0.9199 33 1 3.4776 -2.3647 -0.0521 34 1 2.6417 -3.9110 0.2273 35 1 -0.9829 -3.8577 1.6165 36 1 -0.7016 -2.4811 2.7319 37 1 3.6011 -5.6237 4.6204 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258593027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:53 Heat of formation + Delta-G solvation = -90.202195 kcal Electronic energy + Delta-G solvation = -17439.583167 eV Core-core repulsion = 14796.383837 eV Total energy + Delta-G solvation = -2643.199329 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.77319 -36.95566 -33.78974 -32.72052 -30.92914 -28.53122 -27.23550 -26.88913 -25.61217 -24.64669 -21.16114 -20.24220 -18.47608 -16.78593 -16.08950 -15.41274 -14.64923 -14.40103 -14.07830 -13.73032 -13.50389 -13.27669 -13.03759 -12.51572 -12.22604 -11.98143 -11.67559 -11.60944 -11.32781 -11.03368 -10.97323 -10.90174 -10.58717 -10.50518 -10.27567 -10.14068 -10.03200 -9.79341 -9.24635 -8.80886 -8.66497 -8.22949 -6.14345 -4.28528 3.24438 3.32421 3.36189 4.32065 4.54254 4.86318 5.13465 5.20050 5.22799 5.60044 5.65504 5.76613 5.79246 5.91985 5.99292 6.04029 6.09571 6.16527 6.20180 6.23590 6.25615 6.36757 6.39997 6.50596 6.53789 6.58156 6.75261 6.76906 6.86703 7.03545 7.08366 7.42964 7.76691 8.11347 8.51696 8.82410 9.43350 10.93878 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.045307 B = 0.007368 C = 0.007278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.856575 B = 3799.239245 C = 3846.318100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.060 4.060 3 C -0.139 4.139 4 C -0.155 4.155 5 C -0.107 4.107 6 C 0.247 3.753 7 C -0.183 4.183 8 O -0.389 6.389 9 C 0.019 3.981 10 C 0.185 3.815 11 H 0.041 0.959 12 C -0.533 4.533 13 H 0.068 0.932 14 C 0.078 3.922 15 N -0.863 5.863 16 Si 0.898 3.102 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.281 1.281 20 O -0.359 6.359 21 H 0.046 0.954 22 H 0.036 0.964 23 H 0.085 0.915 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.117 7.675 -7.994 11.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.061 4.061 3 C -0.196 4.196 4 C -0.211 4.211 5 C -0.145 4.145 6 C 0.169 3.831 7 C -0.240 4.240 8 O -0.311 6.311 9 C -0.057 4.057 10 C 0.131 3.869 11 H 0.058 0.942 12 C -0.570 4.570 13 H 0.086 0.914 14 C -0.129 4.129 15 N -0.499 5.499 16 Si 0.725 3.275 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.207 1.207 20 O -0.280 6.280 21 H 0.065 0.935 22 H 0.055 0.945 23 H 0.103 0.897 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.862 7.718 -8.010 11.278 hybrid contribution 0.034 -0.310 1.084 1.128 sum -1.828 7.408 -6.926 10.305 Atomic orbital electron populations 1.22074 0.94121 1.02908 1.00393 1.20372 0.96359 0.94331 0.94996 1.21898 1.00609 0.95928 1.01161 1.22653 1.01881 1.00180 0.96433 1.21949 1.00831 0.94134 0.97545 1.23038 0.80986 0.92047 0.87060 1.23140 0.99850 1.01500 0.99476 1.88757 1.21925 1.74359 1.46055 1.24288 0.98693 0.94089 0.88617 1.21398 0.80575 0.87673 0.97292 0.94154 1.20926 1.02784 1.38886 0.94384 0.91414 1.25099 0.94781 0.94227 0.98784 1.70035 1.05590 1.37806 1.36471 0.86452 0.78492 0.78045 0.84515 1.19458 1.20719 1.20708 1.89566 1.51493 1.51125 1.35827 0.93460 0.94527 0.89658 0.93034 0.93080 0.92965 0.91054 0.94073 0.91793 0.91515 0.91379 0.90242 0.91921 0.92455 0.90639 0.92193 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 7.61 37.16 0.28 -1.79 16 2 C -0.06 -0.89 0.79 -154.50 -0.12 -1.02 16 3 C -0.14 -1.75 8.31 37.16 0.31 -1.44 16 4 C -0.15 -2.12 6.95 37.16 0.26 -1.86 16 5 C -0.11 -1.93 4.09 -26.73 -0.11 -2.04 16 6 C 0.25 5.14 1.05 -26.73 -0.03 5.11 16 7 C -0.18 -3.40 7.57 37.16 0.28 -3.12 16 8 O -0.39 -7.90 7.04 -59.04 -0.42 -8.32 16 9 C 0.02 0.42 7.51 38.16 0.29 0.71 16 10 C 0.19 4.83 3.16 -26.88 -0.09 4.74 16 11 H 0.04 1.13 8.14 -51.93 -0.42 0.70 16 12 C -0.53 -14.84 8.83 -34.44 -0.30 -15.15 16 13 H 0.07 1.82 7.76 -52.49 -0.41 1.41 16 14 C 0.08 2.18 5.46 -17.81 -0.10 2.08 16 15 N -0.86 -25.41 13.21 55.43 0.73 -24.67 16 16 Si 0.90 21.14 29.54 -169.99 -5.02 16.11 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 O -0.36 -9.43 10.58 -59.04 -0.62 -10.06 16 21 H 0.05 0.73 8.00 -51.93 -0.42 0.32 16 22 H 0.04 0.48 8.08 -51.93 -0.42 0.06 16 23 H 0.08 1.41 5.24 -51.93 -0.27 1.14 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.57 8.12 -51.92 -0.42 0.15 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 1.03 5.40 -51.93 -0.28 0.75 16 28 H 0.04 0.49 7.91 -51.93 -0.41 0.08 16 29 H 0.06 0.87 5.45 -51.93 -0.28 0.59 16 30 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 31 H 0.07 1.20 7.95 -51.93 -0.41 0.79 16 32 H 0.08 1.30 4.74 -51.93 -0.25 1.05 16 33 H 0.06 1.07 6.35 -51.93 -0.33 0.74 16 34 H 0.06 1.18 8.04 -51.93 -0.42 0.76 16 35 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.06 1.30 8.01 -51.93 -0.42 0.88 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 283.00 15.07 4.26 4.26 Total: -1.00 -29.49 283.00 -6.37 -35.86 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.98 Total: 0.58 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 0.67 Total: -13.78 kcal Atomic # 7 Polarization: -25.41 SS G_CDS: 0.73 Total: -24.67 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -1.04 Total: -18.37 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.49 -6.37 -35.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258593027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.344 kcal (2) G-P(sol) polarization free energy of solvation -29.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds